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2018 Fiscal Year Annual Research Report

Development of novel materials by design of artificial proteins

Research Project

Project/Area Number 16H04779
Research InstitutionYokohama City University

Principal Investigator

J・R・H Tame  横浜市立大学, 生命医科学研究科, 教授 (00336588)

Co-Investigator(Kenkyū-buntansha) 池上 貴久  横浜市立大学, 生命医科学研究科, 教授 (20283939)
Project Period (FY) 2016-04-01 – 2019-03-31
Keywordsprotein design / artificial protein
Outline of Annual Research Achievements

The project involves the creation of new proteins such as Pizza, an artificial protein we described in 2014. In 2018, we investigated protein complexes with polyoxometalates (POMs) to create novel catalysts. Four different Pizza-POM complexes have been crystallised, and these structures have been refined to high resolution. A paper is now in preparation, in collaboration with the Voet group in Belgium. Work is continuing to create novel protein networks cross-linked by POMs. Using the same method employed earlier with Pizza, we have attempted to create a novel five-fold symmetrical protein. This protein has been made, and X-ray crystallographic analysis is being carried out. Several earlier designs were not found to be very stable. A stable 8-fold symmetric protein has been created and used to make 2- and 4-fold building blocks. These models are also being used to investigate the evolution of symmetrical proteins in Nature, and find simple rules to control the shape of ring-shaped proteins. Combinations of Pizza protein with coiled-coil domains were used to make three large complexes with different overall symmetry. The correct size of the complexes in solution was demonstrated by analytical centrifugation. In collaboration with the Ozeki group in Yokohama, a novel lectin has been found that can bind certain cells selectively through surface sugar groups. This work has been submitted for publication, and the crystal structure is solved.

Research Progress Status

平成30年度が最終年度であるため、記入しない。

Strategy for Future Research Activity

平成30年度が最終年度であるため、記入しない。

  • Research Products

    (8 results)

All 2019 2018

All Journal Article (4 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 4 results,  Open Access: 2 results) Presentation (3 results) (of which Int'l Joint Research: 3 results,  Invited: 3 results) Book (1 results)

  • [Journal Article] Computational design of symmetrical eight-bladed β-propeller proteins2019

    • Author(s)
      Noguchi Hiroki、Addy Christine、Simoncini David、Wouters Staf、Mylemans Bram、Van Meervelt Luc、Schiex Thomas、Zhang Kam Y. J.、Tame Jeremy R. H.、Voet Arnout R. D.
    • Journal Title

      IUCrJ

      Volume: 6 Pages: 46~55

    • DOI

      10.1107/S205225251801480X

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Molecular basis of hemoglobin adaptation in the high-flying bar-headed goose2018

    • Author(s)
      Natarajan Chandrasekhar、Jendroszek Agnieszka、Kumar Amit、Weber Roy E.、Tame Jeremy R. H.、Fago Angela、Storz Jay F.
    • Journal Title

      PLOS Genetics

      Volume: 14 Pages: e1007331

    • DOI

      10.1371/journal.pgen.1007331

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The crystal structure and oligomeric form of Escherichia coli l , d -carboxypeptidase A2018

    • Author(s)
      Meyer Karen、Addy Christine、Akashi Satoko、Roper David I.、Tame Jeremy R.H.
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 499 Pages: 594~599

    • DOI

      10.1016/j.bbrc.2018.03.195

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Design of tryptophan-containing mutants of the symmetrical Pizza protein for biophysical studies2018

    • Author(s)
      Noguchi Hiroki、Mylemans Bram、De Zitter Elke、Van Meervelt Luc、Tame Jeremy R.H.、Voet Arnout
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 497 Pages: 1038~1042

    • DOI

      10.1016/j.bbrc.2018.02.168

    • Peer Reviewed / Int'l Joint Research
  • [Presentation] Protein design for new frameworks and networks2019

    • Author(s)
      Jeremy Tame
    • Organizer
      The Second International workshop by the 174th committee JSPS on Symbiosis of Biology and Nanodevices
    • Int'l Joint Research / Invited
  • [Presentation] Photoactivation of a light-regulated adenylate cyclase2018

    • Author(s)
      Jeremy Tame
    • Organizer
      The Astbury Conversation UK
    • Int'l Joint Research / Invited
  • [Presentation] A vision of the future2018

    • Author(s)
      Jeremy Tame
    • Organizer
      BIO NANO 2018 Krakow Poland
    • Int'l Joint Research / Invited
  • [Book] Approaches to Entropy2019

    • Author(s)
      Jeremy R. H. Tame
    • Total Pages
      202
    • Publisher
      Springer
    • ISBN
      978-981-13-2315-7

URL: 

Published: 2019-12-27  

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