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2009 Fiscal Year Final Research Report

Tailor-made Antitumor Agents based on DNA Sequence

Research Project

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Project/Area Number 17016033
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionKyoto University

Principal Investigator

SUGIYAMA Hiroshi  Kyoto University, 大学院・理学研究科, 教授 (50183843)

Co-Investigator(Kenkyū-buntansha) BANDO Toshikazu  京都大学, 大学院・理学研究科, 准教授 (20345284)
Project Period (FY) 2005 – 2009
KeywordsPy-Imポリアミド / テーラーメード抗がん剤 / 塩基配列認識 / 配列特異的アルキル化 / 遺伝子発現制御
Research Abstract

Direct regulation of the expression level of a specific gene will provide a promising approach for cancer therapy. N-Methylpyrrole (Py) and N-methylimidazole (Im) polyamides are a new type of small molecules that precisely bind to the minor groove of the DNA duplex in a sequence-specific fashion. We designed and synthesized a series of sequence-specific alkylating Py-Im polyamide conjugates that selectively alkylate taget DNA sequences. We have demonstrated that sequence-specific alkylating agents possess gene-silencing activities and a promising potency against human cancer cell lines.

  • Research Products

    (45 results)

All 2010 2009 2008 2007 2006 2005 Other

All Journal Article (23 results) (of which Peer Reviewed: 23 results) Presentation (17 results) Book (2 results) Remarks (1 results) Patent(Industrial Property Rights) (2 results)

  • [Journal Article] Cooperative Alkylation of Double-strand Human Telomere Repeat Sequences by PI Polyamides with 11-Base-pair Recognition Based on a Heterotrimeric Design.2009

    • Author(s)
      Kashiwazaki, G.; Bando, T.; Shinohara, K.; Minoshima, M.; Nishijima, S.; Sugiyama, H.
    • Journal Title

      Bioorg. Med. Chem. 17

      Pages: 1393-1397

    • Peer Reviewed
  • [Journal Article] A Novel Gene Silence, Pyrrole-Imidazole Polyamide Targeting Human Lectin-like Oxidized Low-density Lipoprotein Receptor-1 Gene Improves Endothelial Cell Function.2009

    • Author(s)
      Ueno, T.; Fukuda, N.; Tsunemi, A.; Yao, E.H.; Matsuda, H.; Tahira, K.; Matsumoto, T.; Matsumoto, Y.; Nagase, H.; Sugiyama, H.; Sawamura, T.
    • Journal Title

      J. Hypertens. 27

      Pages: 508-516

    • Peer Reviewed
  • [Journal Article] Determination of Pyrrole-Imidazole Polyamide in Rat Plasma by Liquid Chromatography-Tandem Mass Spectrometry.2009

    • Author(s)
      Nagashima, T.; Aoyama, T.; Fukasawa, A.; Watabe, S.; Fukuda, N.; Ueno, T.; Sugiyama, H.; Nagase, H.; Matsumoto, Y.
    • Journal Title

      J. Chromatogr. Analyt. Technol. Biomed. Life Sci. 877

      Pages: 1070-1076

    • Peer Reviewed
  • [Journal Article] Development of a Molecule-Recognized Promoter DNA Sequence for Inhibition of HER2 Expression.2009

    • Author(s)
      Suzuki, T.; Asami, Y.; Takahashi, T.; Wang, X.; Watanabe, T.; Bando, T.; Sugiyama, H.; Fukuda, N.; Nagase, H.
    • Journal Title

      J. Antibiot. 62

      Pages: 339-341

    • Peer Reviewed
  • [Journal Article] Synthesis and Properties of PI Polyamide-SAHA Conjugate.2009

    • Author(s)
      Ohtsuki, A.; Kimura, M.T.; Minoshima, M.; Suzuki, T.; Ikeda, M.; Bando, T.; Nagase, H.; Shinohara, K.; Sugiyama, H.
    • Journal Title

      Tetrahedron Lett. 50

      Pages: 7288-7292

    • Peer Reviewed
  • [Journal Article] Sequence-Specific Alkylation by Y-shaped and Tandem Hairpin Pyrrole-Imidazole Polyamides.2008

    • Author(s)
      Sasaki, S.; Bando, T.; Minoshima, M.; Shinohara, K.; Sugiyama, H.
    • Journal Title

      Chem. Eur. J. 14

      Pages: 864-870

    • Peer Reviewed
  • [Journal Article] Requirement of β-Alanine Components in Sequence-Specific DNA Alkylation by Pyrrole-Imidazole Conjugates with Seven-Base Pair Recognition.2008

    • Author(s)
      Bando, T.; Minoshima, M.; Kashiwazaki, G.; Shinohara, K.; Sasaki, S.; Fujimoto, J.; Ohtsuki, A.; Murakami, M.; Nakazono, S.; Sugiyama, H.
    • Journal Title

      Bioorg. Med. Chem. 16

      Pages: 2286-2291

    • Peer Reviewed
  • [Journal Article] Pyrrole-Imidazole Hairpin Polyamides with High Affinity at 5'-CGCG-3' DNA Sequence; Influence of Cytosine Methylation on Binding.2008

    • Author(s)
      Minoshima, M.: Bando, T.; Sasaki, S.; Fujimoto, J.; Sugiyama, H.
    • Journal Title

      Nucleic. Acids. Res. 36

      Pages: 2889-2894

    • Peer Reviewed
  • [Journal Article] Detection of Triplet Repeat Sequences in the Double-Stranded DNA using Pyrene-Functionalized Pyrrole-Imidazole Polyamides with Rigid Linkers.2008

    • Author(s)
      Fujimoto, J.; Bando, T.; Uchida, S.; Iwasaki, M.; Shinohara, K.; Sugiyama, H.
    • Journal Title

      Bioorg. Med. Chem. 16

      Pages: 5899-5907

    • Peer Reviewed
  • [Journal Article] A Novel Gene Silencer Pyrrole-Imidazole Polyamide Targeting LOX-1 Attenuates Restenosis of the Artery after Injury.2008

    • Author(s)
      Yao, E-H.; Fukuda, N.; Ueno, T.; Matsuda, M.; Matsumoto, M.; Nagase, H.; Matsumoto, Y.; Takasaka, A.; Serie, K.; Sugiyama, H.; Sawamura, T.
    • Journal Title

      Hypertension 52

      Pages: 86-92

    • Peer Reviewed
  • [Journal Article] Development of Pyrrole-Imidazole Polyamide for Specific Regulation of Human Aurora Kinase A and B Gene Expression.2008

    • Author(s)
      Takahashi, T.; Asami, Y.; Kitamura, E.; Suzuki, T.; Wang, X.; Igarashi, J.; Morohashi, A.; Shinojima, Y.; Kanou, H.; Saito, K.; Takasu, T.; Nagase, H.; Harada, Y.; Kuroda, K.; Watanabe, T.; Kumamoto, S.; Aoyama, T.; Matsumoto, Y.; Bando, T.; Sugiyama, H.; Yoshida-Noro, C.; Fukuda, N.; Hayashi N.
    • Journal Title

      Chem. Biol. 15

      Pages: 829-841

    • Peer Reviewed
  • [Journal Article] Perylene-Conjugated Pyrrole Polyamide as a Sequence-Specific Fluorescent Probe.2008

    • Author(s)
      Fujimoto, J.; Bando, T.; Minoshima, M.; Kashiwazaki, G.; Nishijima, S.; Shinohara, K.; Sugiyama, H.
    • Journal Title

      Bioorg. Med. Chem. 16

      Pages: 9741-9744

    • Peer Reviewed
  • [Journal Article] DNA Alkylation by Pyrrole-Imidazole seco-CBI Conjugates with an Indole Linker: Sequence-Specific DNA Alkylation with Ten-Base-Pair Recognition through Hetelodimer Formation.2007

    • Author(s)
      Minoshima, M.; Bando, T.; Sasaki, S.; Shinohara, K.; Shimizu, T.; Fujimoto, J.; Sugiyama, H.
    • Journal Title

      J. Am. Chem. Soc. 129

      Pages: 5384-5390

    • Peer Reviewed
  • [Journal Article] Detection of CAG Repeat DNA Sequences by Pyrene-Functionalized Pyrrole-Imidazole Polyamides.2007

    • Author(s)
      Bando, T.;Fujimoto, J.; Minoshima, M.; Shinohara, K.; Sasaki, S.; Kashiwazaki, G.; Mizumura, M.; Sugiyama, H.
    • Journal Title

      Bioorg. Med. Chem. 15

      Pages: 6937-6942

    • Peer Reviewed
  • [Journal Article] Development of Gene Silencing Pyrrole-Imidazole Polyamide Targeting the TGF-β1 Promoter for Treatment of Progressive Renal Diseases.2006

    • Author(s)
      Matsuda, H.; Fukuda, N.; Ueno, T.; Tahira, Y.; Ayame, H.; Zhang, W.; Bando, T.; Sugiyama, H.; Saito, S.; Matsumoto, K.; Mugishima, H.; Serie, K.
    • Journal Title

      J. Am. Soc. Nephr. 17

      Pages: 422-432

    • Peer Reviewed
  • [Journal Article] Antitumor Activity of Sequence-Specific Alkylating Agents: Pyrrole-Imidazole CBI Conjugates with Indole Linker.2006

    • Author(s)
      Shinohara, K.; Bando, T.; Sasaki, S.; Sakakibara, Y.; Minoshima, M.; Sugiyama, H.
    • Journal Title

      Cancer Science. 97

      Pages: 219-225

    • Peer Reviewed
  • [Journal Article] Efficient DNA Alkylation by a Pyrrole-Imidazole CBI Conjugate with an Indole Linker: Sequence Specific Alkylation with Nine-Base-Pair Recognition.2006

    • Author(s)
      Bando, T.; Sasaki, S.; Minoshima, M.; Dohno, C.; Shinohara, K.; Narita, A.; Sugiyama, H.
    • Journal Title

      Bioconjugate Chem. 17

      Pages: 715-720

    • Peer Reviewed
  • [Journal Article] Alkylation of Template Strand of Coding Region Causes Effective Gene Silencing.2006

    • Author(s)
      Shinohara, K.; Sasaki, S.; Minoshima, M.; Bando, T.; Sugiyama, H.
    • Journal Title

      Nucleic Acids Res. 34

      Pages: 1189-1195

    • Peer Reviewed
  • [Journal Article] Discrimination of Hairpin Polyamides with anα-Substituted-γ-Aminobutyric Acid as a 5'-TG-3' Reader in DNA Minor Groove.2006

    • Author(s)
      Zhang, W.; Bando, T.; Sugiyama, H.
    • Journal Title

      J. Am. Chem. Soc. 128

      Pages: 8766-8776

    • Peer Reviewed
  • [Journal Article] Synthesis and Biological Properties of Sequence-Specific DNA-Alkylating Pyrrole-Imidazole Polyamides.2006

    • Author(s)
      ando, T.; Sugiyama, H.
    • Journal Title

      Acc. Chem. Res. 39

      Pages: 935-944

    • Peer Reviewed
  • [Journal Article] Sequence-Specific Alkylation of Double-Strand Human Telomere Repeat Sequence by Pyrrole-Imidazole Polyamides with Indole Linkers.2006

    • Author(s)
      Sasaki, S.; Bando, T.; Minoshima, M.; Shimizu, T.; Shinohara, K.; Takaoka, T.; Sugiyama, H.
    • Journal Title

      J. Am. Chem. Soc. 128

      Pages: 12162-12168

    • Peer Reviewed
  • [Journal Article] Synthetic Pyrrole-Imidazole Polyamide Inhibits Expression of the Human Transforming Growth Factor-β1 Gene.2005

    • Author(s)
      Lai, Y. -M.; Fukuda, N.; Ueno, T.; Kishioka, H.; Matsuda, H.; Saito, S.; Matsumoto, K.; Ayame, H.; Bando, T.; Sugiyama, H.; Mugishima, H.; Kim, S. -J.
    • Journal Title

      J. Pharmacol. Exp. Ther. 315

      Pages: 571-575

    • Peer Reviewed
  • [Journal Article] Specific Adenine Alkylation by Pyrrole-Imidazole CBI Conjugates.2005

    • Author(s)
      Bando, T.; Narita, A.; Sasaki, S.; Sugiyama, H.
    • Journal Title

      J. Am. Chem. Soc. 127

      Pages: 13890-13895

    • Peer Reviewed
  • [Presentation] 人工遺伝子スイッチによる細胞制御2010

    • Author(s)
      杉山弘
    • Organizer
      日本化学会弟90春季年会
    • Place of Presentation
      大阪
    • Year and Date
      20100300
  • [Presentation] Design and Construction of DNA Nanostructures for Integration of Molecules2009

    • Author(s)
      H. Sugiyama
    • Organizer
      International Symposium Watching Biomolecules in Action: Single Molecule Biology Symposium
    • Place of Presentation
      Osaka
    • Year and Date
      20091200
  • [Presentation] 塩基配列特異的アルキル化能を有する機能性PIポリアミド設計2009

    • Author(s)
      板東俊和, 杉山弘
    • Organizer
      第28回メディシナルケミストリーシンポジウム
    • Place of Presentation
      東京
    • Year and Date
      20091100
  • [Presentation] 遺伝子発現を制御するPIポリアミド, 「生体調節のケミカルバイオロジー」シンポジウム2009

    • Author(s)
      杉山弘
    • Place of Presentation
      前橋市
    • Year and Date
      20090300
  • [Presentation] Synthesis and Biological Properties of Sequence-Specific DNA-alkylating Pyrrole-Imidazole Polyamides2009

    • Author(s)
      H. Sugiyama
    • Organizer
      The Next Generation Japanese Technology Showcase
    • Place of Presentation
      New York, USA
    • Year and Date
      20090100
  • [Presentation] Chemical Biology that Controls DNA Structure and Function2008

    • Author(s)
      H. Sugiyama
    • Organizer
      10th KAIST-KYOTO Chemistry Symposium
    • Place of Presentation
      Daejeon, Korea
    • Year and Date
      20081200
  • [Presentation] Pyrrole-Imidazole Polyamide as a Genetic Switch2008

    • Author(s)
      H. Sugiyama
    • Organizer
      Chemical Biology 2008
    • Place of Presentation
      Heidelberg, Germany
    • Year and Date
      20081000
  • [Presentation] Chemical biology that controls DNA structure and function2008

    • Author(s)
      H. Sugiyama
    • Organizer
      International Symposium on Molecular Recognition of DNA: Biological Applications
    • Place of Presentation
      Tokyo
    • Year and Date
      20080900
  • [Presentation] 特定DNA塩基配列を標的とする機能性ポリアミドの開発2008

    • Author(s)
      板東俊和, 杉山弘
    • Organizer
      薬学会第128年会
    • Place of Presentation
      横浜
    • Year and Date
      20080300
  • [Presentation] Chemical biology that controls DNA structure and function2007

    • Author(s)
      H. Sugiyama
    • Organizer
      The 5th Internationa. Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      Tokyo
    • Year and Date
      20071100
  • [Presentation] Chemistry that Controls DNA Structure and Function2007

    • Author(s)
      H. Sugiyama
    • Organizer
      East China University of Science and Technology
    • Place of Presentation
      Shanghai, China
    • Year and Date
      20070800
  • [Presentation] DNAを分子標的とした薬剤の設計2007

    • Author(s)
      杉山弘
    • Organizer
      日本薬学会北陸支部平成19年度特別講演会
    • Place of Presentation
      金沢
    • Year and Date
      20070700
  • [Presentation] DNAの塩基配列と構造を読む分子, 平成18年度科学交流フォーラム-医学を支える生命科学の最前線-2007

    • Author(s)
      杉山弘
    • Place of Presentation
      静岡
    • Year and Date
      20070100
  • [Presentation] dna配列を標的とするアルキル化ピロール-イミダゾールポリアミドの開発2006

    • Author(s)
      板東俊和, 杉山弘
    • Organizer
      第10回がん分子標的治療研究会総会
    • Place of Presentation
      東京
    • Year and Date
      20060600
  • [Presentation] Selective Gene Silencing by Alkylating Pyrrole-Imidazole Polyamide2006

    • Author(s)
      H. Sugiyama
    • Organizer
      KEYSTONE SYMPOSIA
    • Place of Presentation
      Taos, New Mexico, USA
    • Year and Date
      20060400
  • [Presentation] "A Sequence-Specific DNA Alkylating Polyamide, Toward a Tailor-Made Antitumor Agent" Albany 20052005

    • Author(s)
      H. Sugiyama
    • Organizer
      Conversation
    • Place of Presentation
      Albany, USA
    • Year and Date
      20050600
  • [Presentation] dnaを中心としたケミカルバイオロジー2005

    • Author(s)
      杉山弘
    • Organizer
      第3回ケモゲノミクス研究会
    • Place of Presentation
      京都
    • Year and Date
      20050500
  • [Book] ウィーバー分子生物学第4版2008

    • Author(s)
      R.F. Weaver著, 杉山弘・井上丹・森井孝 監訳
    • Total Pages
      1022
    • Publisher
      化学同人
  • [Book] ゲノム化学-医学、分子生物学への応用と展開2007

    • Author(s)
      齋藤烈, 杉山弘, 中谷和彦
    • Total Pages
      214
    • Publisher
      化学同人
  • [Remarks] 研究業績・論文リスト参照

    • URL

      http://kuchem.kyoto-u.ac.jp/chembio/

  • [Patent(Industrial Property Rights)] 標的遺伝子特異的ヒストン修飾制御剤2008

    • Inventor(s)
      永瀬浩喜, 杉山弘
    • Industrial Property Rights Holder
      学校法人日本大学
    • Industrial Property Number
      特願・第2008-172795号
    • Filing Date
      2008-07-01
    • Acquisition Date
      2008-07-01
  • [Patent(Industrial Property Rights)] インターストランドクロスリンク剤の合成方法2008

    • Inventor(s)
      杉山弘
    • Industrial Property Rights Holder
      科学技術振興機構
    • Industrial Property Number
      特許・第4061819号
    • Filing Date
      2008-01-11
    • Acquisition Date
      2008-01-11

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Published: 2011-06-18   Modified: 2016-04-21  

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