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2009 Fiscal Year Final Research Report

Functional genomics using transgenic zebrafish

Research Project

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Project/Area Number 17018034
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionNational Institute of Genetics

Principal Investigator

KAWAKAMI Koichi  National Institute of Genetics, 個体遺伝研究系, 教授 (70195048)

Project Period (FY) 2005 – 2009
Keywords動物ゲノム / ゲノム機能発現 / 遺伝子発現調節 / ゲノムデータベース
Research Abstract

We successfully developed novel genetic methods by using the Tol2 transposon system such as gene trapping, enhancer trapping, the Gal4-UAS system and in vivo transposition system. By utilizing these methods, we created more than 600 of transgenic fish lines that express GFP or Gal4 in specific tissues, cells and organs. By analyzing these transgenic fish, we studied the function of important developmental genes. Further, we constructed a database of the transgenic fish resource and facilitated collaboration with researchers all over the world. Thus, our achievements greatly contributed advances of the study of vertebrate genes.

  • Research Products

    (46 results)

All 2010 2009 2008 2007 2006 2005 Other

All Journal Article (23 results) Presentation (17 results) Book (2 results) Remarks (3 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Mys Protein Regulates Protein Kinase A Activity by Interacting with Regulatory Type IαSubunit during Vertebrate Development.2010

    • Author(s)
      Kotani, T., Iemura, S.I., Natsume, T., Kawakami, K., Yamashita, M.
    • Journal Title

      The Journal of Biological Chemistry 285(in press)

      Pages: 5106-5116

  • [Journal Article] Sleep-wake regulation and hypocretin-melatonin interaction in zebrafish.2009

    • Author(s)
      Appelbaum, L., Wang, G.X., Maro, G.S., Mori, R., Tovin, A., Marin, W., Yokogawa, T., Kawakami, K., Smith, S.J., Gothilf, Y., Mignot, E., Mourrain, P.
    • Journal Title

      Proc. Natl. Acad. Sci. USA 106

      Pages: 21942-21947

  • [Journal Article] Illuminating cell-cycle progression in the developing zebrafish embryo.2009

    • Author(s)
      Sugiyama, M., Sakaue-Sawano, A., Iimura, T., Fukami, K., Kitaguchi, T., Kawakami, K., Okamoto, H., Higashijima, SI., Miyawaki, A.
    • Journal Title

      Proc. Natl. Acad. Sci. USA 106

      Pages: 20812-20817

  • [Journal Article] A novel conserved evx1 enhancer links spinal interneuron morphology and cis-regulation from fish to mammals.2009

    • Author(s)
      Suster, M.L., Kania, A., Liao, M., Asakawa, K., Charron, F., Kawakami, K., Drapeau, P.
    • Journal Title

      Developmental Biology 325

      Pages: 422-433

  • [Journal Article] Afferent neurons of the zebrafish lateral line are strict selectors of hair-cell orientation.2009

    • Author(s)
      Faucherre, A., Pujol-Marti J., Kawakami, K., Lopez-Schier, H.
    • Journal Title

      PLoS One 4

      Pages: e4477

  • [Journal Article] Mechanism of development of ionocytes rich in vacuolar-type H(+)-ATPase in the skin of zebrafish larvae.2009

    • Author(s)
      Esaki, M., Hoshijima, K., Nakamura, N., Munakata, K., Tanaka, M., Ookata, K., Asakawa, K., Kawakami, K., Wang, W., Weinberg, E.S., Hirose, S.
    • Journal Title

      Developmental Biology 329

      Pages: 116-129

  • [Journal Article] Olfactory neural circuitry for attraction to amino acids revealed by transposon-mediated gene trap approach in zebrafish2009

    • Author(s)
      Koide, T., Miyasaka, N., Morimoto, K., Asakawa, K., Urasaki, A., Kawakami, K., Yoshihara, Y.
    • Journal Title

      Proc. Natl. Acad. Sci. USA 106

      Pages: 9884-9889

  • [Journal Article] Dynamic coupling of pattern formation and morphogenesis in the developing vertebrate retina2009

    • Author(s)
      Picker, A., Cavodeassi, F., Machate, A., Bernauer, S., Hans, S., Abe, G., Kawakami, K., Wilson, S.W., Brand, M.
    • Journal Title

      PLoS Biology 7(10)

      Pages: e1000214

  • [Journal Article] Transposon-mediated BAC transgenesis in zebrafish and mice.2009

    • Author(s)
      Suster, M.L., Sumiyama, K., Kawakami, K.
    • Journal Title

      BMC Genomics 10

      Pages: 477

  • [Journal Article] The Tol2-mediated Gal4-UAS method for gene and enhancer trapping in zebrafish.2009

    • Author(s)
      Asakawa, K., Kawakami, K.
    • Journal Title

      Methods 49(3)

      Pages: 275-281

  • [Journal Article] Cis-regulation and chromosomal rearrangement of the fgf8 locus after the teleost/tetrapod split2009

    • Author(s)
      Komisarczuk, A.Z., Kawakami, K., Becker, T.S.
    • Journal Title

      Developmental Biology 336(2)

      Pages: 301-312

  • [Journal Article] Insertional mutagenesis by the Tol2 transposon-mediated enhancer trap approach generated mutations in two developmental genes: tcf7 and synembryn-like.2008

    • Author(s)
      Nagayoshi, S., Hayashi, E., Abe, G., Osato, N., Asakawa, K., Urasaki, A., Horikawa, K., Ikeo, K., Takeda, H., Kawakami, K.
    • Journal Title

      Development 135

      Pages: 159-169

  • [Journal Article] Genetic dissection of neural circuits by Tol2 transposon-mediated Gal4 gene and enhancer trapping in zebrafish2008

    • Author(s)
      Asakawa, K., Suster, M.L., Mizusawa, K., Nagayoshi, S., Kotani, T., Urasaki, A., Kishimoto, Y., Hibi, M., Kawakami, K.
    • Journal Title

      Proc. Natl. Acad. Sci. USA 105

      Pages: 1255-1260

  • [Journal Article] misty somites, a maternal effect gene identified by transposon-mediated insertional mutagenesis in zebrafish that is essential for the somite boundary maintenance.2008

    • Author(s)
      Kotani, T., Kawakami, K.
    • Journal Title

      Developmental Biology 316

      Pages: 383-396

  • [Journal Article] Targeted gene expression by the Gal4-UAS system in zebrafish2008

    • Author(s)
      Asakawa, K., Kawakami, K.
    • Journal Title

      Development Growth & Differentiation 50

      Pages: 391-399

  • [Journal Article] Efficient transposition of the Tol2 transposable element from a single-copy donor in zebrafish2008

    • Author(s)
      Urasaki, A., Asakawa, K., Kawakami, K.
    • Journal Title

      Proc. Natl. Acad. Sci. USA 105

      Pages: 19827-19832

  • [Journal Article] Patterning the zebrafish diencephalon by the conserved zinc-finger protein Fezl.2007

    • Author(s)
      Jeong, J. -Y., Einhorn, Z., Mathur, P., Chen, L., Lee, S., Kawakami, K., Guo, S.
    • Journal Title

      Development 134

      Pages: 127-136

  • [Journal Article] Targeting neural circuitry in zebrafish using GAL4 enhancer trapping.2007

    • Author(s)
      Scott, E.K., Mason, L., Arrenberg, A.B., Ziv, L., Gosse, N.J., Xiao, T., Chi, N.C., Asakawa, K., Kawakami, K., Baier, H.
    • Journal Title

      Nature Methods 4

      Pages: 323-326

  • [Journal Article] Tol2: a versatile gene transfer vector in vertebrates2007

    • Author(s)
      Kawakami, K.
    • Journal Title

      Genome Biology 8(Suppl1)

      Pages: S7

  • [Journal Article] Transposon-mediated gene trapping in zebrafish2006

    • Author(s)
      Kotani, T., Nagayoshi, S., Urasaki, A., Kawakami, K.
    • Journal Title

      Methods 39

      Pages: 199-206

  • [Journal Article] Functional dissection of the Tol2 transposable element identified the minimal cis-sequence and a highly repetitive sequence in the subterminal region essential for transposition.2006

    • Author(s)
      Urasaki, A., Morvan, G., Kawakami, K.
    • Journal Title

      Genetics 174

      Pages: 639-649

  • [Journal Article] Evaluating the biological relevance of putative enhancers using Tol2 transposon-mediated transgenesis in zebrafish.2006

    • Author(s)
      Fisher, S., Grice, E.A., Vinton, R.M., Bessling, S.L., Urasaki, A., Kawakami, K., McCallion, A.S.
    • Journal Title

      Nature protocols 1

      Pages: 1297-1305

  • [Journal Article] Transposon tools and methods in zebrafish2005

    • Author(s)
      Kawakami, K.
    • Journal Title

      Developmental Dynamics 234

      Pages: 244-254

  • [Presentation] From gene to function: a quest with a transposon.2010

    • Author(s)
      Kawakami, K.
    • Organizer
      Zebrafish 2010: 11th Australia & New Zealand Workshop.
    • Place of Presentation
      Sydney. Australia
    • Year and Date
      20100203-20100205
  • [Presentation] Transposon-mediated gene trapping, enhancer trapping and insertional mutagenesis2009

    • Author(s)
      Kawakami, K.
    • Organizer
      The 4th Asia-Oceania Zebrafish Meeting.
    • Place of Presentation
      Jeju, Korea
    • Year and Date
      20090831-20090902
  • [Presentation] Tol2-mediated transgenesis in zebrafish and mice.2009

    • Author(s)
      Kawakami, K.
    • Organizer
      Conference on Genome Engineering.
    • Place of Presentation
      Minneapolis, Minnesota
    • Year and Date
      20090625-20090627
  • [Presentation] Transposon-mediated insertional mutagenesis: an overview.2009

    • Author(s)
      Kawakami, K.
    • Organizer
      Zebrafish Knockout Project: Organization & Strategy Meeting
    • Place of Presentation
      Cambridge, UK.
    • Year and Date
      20090307-20090309
  • [Presentation] Recent advances in the Tol2 transposon technology in zebrafish.2009

    • Author(s)
      Kawakami, K.
    • Organizer
      3rd Strategic Conference of Zebrafish Investigators.
    • Place of Presentation
      Asilomar, California.
    • Year and Date
      20090124-20090128
  • [Presentation] Targeted Gene Expression by Tol2 Transposon-mediated Gal4 Gene and Enhancer Trap Approaches in Zebrafish.2008

    • Author(s)
      Asakawa, K., Suster, M.L., Mizusawa, K., Nagayoshi, S., Kotani, T., Urasaki, A., Kishimoto, Y., Hibi, M., Kawakami, K.
    • Organizer
      8th International Conference on Zebrafish Development and Genetics
    • Place of Presentation
      Madison, Wisconsin
    • Year and Date
      20080625-20080629
  • [Presentation] Transposon-mediated gene trapping and enhancer trapping in zebrafish2008

    • Author(s)
      Kawakami, K.
    • Organizer
      6th Annual International Conference on Transposition and Animal Biotechnology
    • Place of Presentation
      Berlin, Germany
    • Year and Date
      20080619-20080621
  • [Presentation] Genetic dissection of neural circuits by Tol2 transposon-mediated Gal4 gene and enhancer trapping in zebrafish.2008

    • Author(s)
      Kawakami, K.
    • Organizer
      Asia pacific zebrafish network meeting
    • Place of Presentation
      Auckland, New Zealand
    • Year and Date
      20080217-20080220
  • [Presentation] Transposon-mediated gene trapping and enhancer trapping in zebrafish2007

    • Author(s)
      Kawakami, K.
    • Organizer
      Indian Society of Developmental Biologists
    • Place of Presentation
      Agra, India
    • Year and Date
      20071018-20071019
  • [Presentation] Transposon-mediated gene and enhancer trapping in zebrafish.2007

    • Author(s)
      Kawakami, K.
    • Organizer
      The 16th Korea Genome Organization Conference
    • Place of Presentation
      Seoul, Korea.
    • Year and Date
      20070913-20070914
  • [Presentation] Development of the Gal4-enhancer trap system using the Tol2 transposable element and its application to inhibition of synaptic transmission in zebrafish.2006

    • Author(s)
      Asakawa, K., Mizusawa, K., Urasaki, A., Kotani, T., Nagayoshi, S., Kishimoto, Y., Hibi, M., Kawakami, K.
    • Organizer
      7th International Conference on Zebrafish Development & Genetics
    • Place of Presentation
      Madison, Wisconsin.
    • Year and Date
      20060614-20060618
  • [Presentation] Remobilization of integrated transposons: the jump starter system in zebrafish2006

    • Author(s)
      Urasaki, A., Asakawa, K., Kawakami, K.
    • Organizer
      7th International Conference on Zebrafish Development & Genetics
    • Place of Presentation
      Madison, Wisconsin
    • Year and Date
      20060614-20060618
  • [Presentation] The Tol2 transposable element: minimum cis-requirements and remobilization2006

    • Author(s)
      Kawakami, K.
    • Organizer
      ASM conferences: Mobile DNA
    • Place of Presentation
      Banff, Canada
    • Year and Date
      20060224-20060301
  • [Presentation] Gene and enhancer trapping using the Tol2 transposon system.2005

    • Author(s)
      Kawakami, K.
    • Organizer
      Strategic Conference of Zebrafish Investigators
    • Place of Presentation
      Salisbury Cove, Maine
    • Year and Date
      20050915-20050917
  • [Presentation] Development of the Gal4-enhancer trap system using the Tol2 transposable element in zebrafish2005

    • Author(s)
      Asakawa, K., Ito, A., Urasaki, A., Kotani, T., Nagayoshi, S., Kishimoto, Y., Hibi, M., Kawakami, K.
    • Organizer
      2005 West Coast Zebrafish Meeting
    • Place of Presentation
      Eugene, Oregon
    • Year and Date
      20050909-20050910
  • [Presentation] The Tol2-mediated genetic methodologies in zebrafish: gene trapping, enhancer trapping and remobilization.2005

    • Author(s)
      Urasaki, A., Asakawa, K., Kotani, T., Nagayoshi, S., Kishimoto, Y., Kawakami, K.
    • Organizer
      4th European Zebrafish Genetics and Development Meeting
    • Place of Presentation
      Dresden, Germany.
    • Year and Date
      20050713-20050716
  • [Presentation] The Tol2 transposable element: efficient gene and enhancer trapping in vertebrate2005

    • Author(s)
      Kawakami, K.
    • Organizer
      FASEB Summer Research Conferences "Mammalian Mobile Elements"
    • Place of Presentation
      Tucson, Arizona.
    • Year and Date
      20050604-20050609
  • [Book] Essential zebrafish methods: genetics and genomics(The transgensis and gene and enhancer trap methods in zebrafish by using the Tol2 transposable element)2009

    • Author(s)
      Kawakami, K.
    • Total Pages
      153-173
    • Publisher
      Academic Press
  • [Book] Methods in Molecular Biology(Zebrafish: methods and protocols)2009

    • Author(s)
      Lieschke, G.J., Oates, A.C., Kawakami, K.
    • Total Pages
      335
    • Publisher
      Humana Press
  • [Remarks]

    • URL

      http://kawakami.lab.nig.ac.jp/

  • [Remarks] zTrap: zebrafish gene trap and enhancer trap database

    • URL

      http://kawakami.lab.nig.ac.jp/zTrap/

  • [Remarks] 毎日新聞2008年1月15日掲載「魚の神経回路を制御」

  • [Patent(Industrial Property Rights)] ボツリヌス毒素遺伝子トランスジェニックフィッシュ2009

    • Inventor(s)
      川上浩一, サスター, マキシミリアーノ
    • Industrial Property Rights Holder
      大学共同利用機関法人情報・システム研究機構
    • Industrial Property Number
      特願2009-211821
    • Filing Date
      2009-09-14

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Published: 2011-06-18   Modified: 2016-04-21  

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