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2009 Fiscal Year Final Research Report

Study of the microbial system based on high-throughput DNA sequencing

Research Project

  • PDF
Project/Area Number 17020007
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionThe University of Tokyo (2007-2009)
Kitasato University (2005-2006)

Principal Investigator

HATTORI Masahira  The University of Tokyo, 大学院・新領域創成科学研究科, 教授 (70175537)

Co-Investigator(Kenkyū-buntansha) YAMASHITA Atsushi  北里大学, 北里生命科学研究所, 助手 (20348585)
TOH Hidehiro  理化学研究所, 基幹研究所, 研究員 (10353468)
TAKAMI Hideto  海洋研究開発機構, 極限環境生物圏研究センター, グループリーダー (70359165)
Project Period (FY) 2005 – 2009
Keywordsゲノム / メタゲノム / 微生物 / 腸内細菌
Research Abstract

In this study, we established a new research infrastructure for the analysis of the biological system of bacteria by using high-throughput DNA sequencing technologies. Particularly, we focused on the genome analysis of human microbes such as E. coli, Bifidobacteria and Lactobacillus species, and also established a culture-independent metagenomic approach by which the biological function of human gut microbiota was clarified by comprehensively identifying genes encoded by the gut microbiota including unculturable species.

  • Research Products

    (20 results)

All 2010 2009 2008 2007 2006 Other

All Journal Article (10 results) (of which Peer Reviewed: 10 results) Presentation (5 results) Book (3 results) Remarks (2 results)

  • [Journal Article] Complete genome sequence of the wild-type commensal Escherichia coli strain SE15 belonging to phylogenetic group B22010

    • Author(s)
      藤、服部, 他(全14名, 1, 14番目)
    • Journal Title

      J. Bacteriol. 192

      Pages: 1165-1166

    • Peer Reviewed
  • [Journal Article] Complete genome sequence of probiotic Lactobacillus rhamnosus ATCC531032009

    • Author(s)
      藤、服部, 他(全7名, 2, 7番目)
    • Journal Title

      J. Bacteriol. 191

      Pages: 7630-7631

    • Peer Reviewed
  • [Journal Article] The human intestinal microbiome: A new frontier of human biology2009

    • Author(s)
      服部, Taylor TD
    • Journal Title

      DNA Res. 16

      Pages: 1-12

    • Peer Reviewed
  • [Journal Article] Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult2008

    • Author(s)
      藤、服部, 他(全12名, 2, 12番目)
    • Journal Title

      DNA Res. 15

      Pages: 375-386

    • Peer Reviewed
  • [Journal Article] Genome of an endosymbiont coupling N2 fixation to cellulolysis within protist cells in termite gut2008

    • Author(s)
      本郷、服部, 他(全11名, 5, 10番目)
    • Journal Title

      Science 322

      Pages: 1108-1109

    • Peer Reviewed
  • [Journal Article] The genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350.2008

    • Author(s)
      大西、服部, 他(全9名, 8番目)
    • Journal Title

      J. Bacteriol. 190

      Pages: 4050-4060

    • Peer Reviewed
  • [Journal Article] Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes.2007

    • Author(s)
      黒川、藤、高見、服部, 他(全20名, 5, 7, 20番目)
    • Journal Title

      DNA Res. 14

      Pages: 169-181

    • Peer Reviewed
  • [Journal Article] An improved isolation method for metagenomic analysis of the microbial flora of the human intestine2007

    • Author(s)
      森田、高見、服部, 他(全8名, 6, 8番目)
    • Journal Title

      Microbes Environ. 22

      Pages: 214-222

    • Peer Reviewed
  • [Journal Article] The 160-kilobase genome of the bacterial endosymbiont Carsonella2006

    • Author(s)
      中鉢、藤、服部, 他(全7名, 3, 7番目)
    • Journal Title

      Science 314

      Pages: 267

    • Peer Reviewed
  • [Journal Article] Massive genome erosion and functional adaptations provide insights into the commensalistic lifestyle of the tsetse endosymbiont, Sodalis glossinidius2006

    • Author(s)
      藤、山下、服部, 他(全7名, 1, 4, 6番目)
    • Journal Title

      Genome Res. 16

      Pages: 149-156

    • Peer Reviewed
  • [Presentation] High-throughput analysis of human gut microbiomes by next generation sequencing2010

    • Author(s)
      服部
    • Organizer
      第83回日本細菌学会: International Symposium‘Microbiota and Intestinal Homeostasis'
    • Place of Presentation
      横浜
    • Year and Date
      2010-03-29
  • [Presentation] Metagenomics: a gene-centric approach for the human gut microbiome research2009

    • Author(s)
      服部
    • Organizer
      2009 symposium on the metabolism of foods and drugs by intestinal microflora
    • Place of Presentation
      韓国ソウル
    • Year and Date
      2009-10-20
  • [Presentation] Metagenomic analysis of the human gut microbiota: A new frontier of human biology2008

    • Author(s)
      服部
    • Organizer
      JSPS-DST Asian Academic Seminar 2008
    • Place of Presentation
      インドバンガロール
    • Year and Date
      20081226-20081230
  • [Presentation] Sequencing of human gut microbiomes2007

    • Author(s)
      服部
    • Organizer
      The 7th Advance Genomics Workshop
    • Place of Presentation
      東京
    • Year and Date
      20071127-20071128
  • [Presentation] Sequencing of bacterial genomes and metagenomes2007

    • Author(s)
      服部
    • Organizer
      Metagenomics 2007
    • Place of Presentation
      米国サンディエゴ
    • Year and Date
      20070711-20070713
  • [Book] 遺伝子医学の最前線と次世代シーケンサー(メタゲノミクスとヒト腸内細菌叢の機能 実験医学増刊号, 実験医学, 27(12))2009

    • Author(s)
      服部
    • Total Pages
      121-127
    • Publisher
      羊土社
  • [Book] 感染・炎症・免疫(腸内細菌叢のメタゲノム解析とヒト生物学への展開, 39(1))2009

    • Author(s)
      服部
    • Total Pages
      2-13
    • Publisher
      医薬の門社
  • [Book] ヒトの腸内細菌叢の全体像-メタゲノム解析から見えてきたこと-(科学 78(1))2008

    • Author(s)
      服部
    • Total Pages
      30-33
    • Publisher
      岩波書店
  • [Remarks] 内容:ヒト腸内細菌叢を構成する腸内細菌のゲノム配列と遺伝子アミノ酸配列情報/ヒト腸内細菌叢メタゲノムデータベース

    • URL

      http://metagenome.jp/microbes/

  • [Remarks] 報道関連情報(朝日新聞2005. 11. 26;毎日新聞2006. 10. 13;日刊工業新聞2006. 12. 7;朝日新聞2007. 7. 23;日経新聞2007. 9. 17;毎日新聞2007. 10. 19;日経新聞2007. 10. 7;読売新聞2008. 7. 6;読売新聞2008. 11. 17; NHKサイエンスゼロ2008. 7. 26)

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Published: 2011-06-18   Modified: 2016-04-21  

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