• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to project page

2009 Fiscal Year Final Research Report

Development of a genome-scale in vitro transcription and translation-coupled system

Research Project

  • PDF
Project/Area Number 17076009
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Science and Engineering
Research InstitutionRitsumeikan University (2008-2009)
Kyoto University (2005-2007)

Principal Investigator

IMANAKA Tadayuki  Ritsumeikan University, 生命科学部, 教授 (30029219)

Co-Investigator(Kenkyū-buntansha) KANAI Tamotsu  京都大学, 工学研究科, 助教 (10346083)
YOSHIKAWA Yuko  環太平洋大学, 次世代教育学部, 教授 (80291871)
Project Period (FY) 2005 – 2009
Keywords超好熱菌 / in vitro転写系 / in vitro翻訳系 / 再構成系 / ゲノム
Research Abstract

Transcription (RNA synthesis from DNA) and translation (Protein synthesis from RNA) are ubiquitous systems in all living organisms. An in vitro transcription system and an in vitro translation system were developed using stable cell components of a hyperthermophilic archaeon,Thermococcus kodakaraensis. A system for in vitro transcription and translation-coupled reactions was also constructed which enabled in vitro protein production from a DNA template. Furthermore, production of proteins from an operon, a cluster of genes transcribed as a single transcriptional unit, was also achieved.

  • Research Products

    (43 results)

All 2010 2009 2008 2007 2006 2005 Other

All Journal Article (29 results) (of which Peer Reviewed: 29 results) Presentation (11 results) Book (1 results) Remarks (1 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Identification of the Phr-dependent heat shock regulon in the hyperthermophilic archaeon, Thermococcus kodakaraensis2010

    • Author(s)
      T. Kanai, S. Takedomi, S. Fujiwara, H. Atomi, T. Imanaka
    • Journal Title

      J. Biochem. 147(3)

      Pages: 361-370

    • Peer Reviewed
  • [Journal Article] Thermococcus kodakaraensis mutants deficient in di-myo-inositol phosphate use aspartate to cope with heat stress2010

    • Author(s)
      N. Borges, R. Matsumi, T. Imanaka, H. Atomi, H. Santos
    • Journal Title

      J. Bacteriol. 192(1)

      Pages: 191-197

    • Peer Reviewed
  • [Journal Article] Protein synthesis in giant liposomes using the in vitro translation system of Thermococcus kodakaraensis2009

    • Author(s)
      K. Yamaji, T. Kanai, S.M. Nomura, K. Akiyoshi, M. Negishi, Y. Chen, H. Atomi, K. Yoshikawa, T. Imanaka
    • Journal Title

      IEEE Trans. NanoBioscience 8(4)

      Pages: 325-331

    • Peer Reviewed
  • [Journal Article] Efficient in vitro synthesis of cis-polyisoprenes using a thermostable cis-prenyltransferase from a hyperthermophilic archaeon Thermococcus kodakaraensis2009

    • Author(s)
      Y. Yamada, W. Fukuda, K. Hirooka, T. Hiromoto, J. Nakayama, T. Imanaka, E. Fukusaki, S. Fujiwara
    • Journal Title

      J. Biotechnol. 143(2)

      Pages: 151-156

    • Peer Reviewed
  • [Journal Article] Highly thermostable L-threoninedehydrogenase from the hyperthermophilic archaeon Thermococcus kodakaraensis2009

    • Author(s)
      Q. Bashir, N. Rashid, F. Jamil, T. Imanaka, M. Akhtar
    • Journal Title

      J. Biochem. 146(1)

      Pages: 95-102

    • Peer Reviewed
  • [Journal Article] Effect of growth temperature and growth phase on lipid composition of archaeal membrane from Thermococcus kodakaraensis2009

    • Author(s)
      Y. Matsuno, A. Sugai, H. Higashibata, W. Fukuda, K. Ueda, I. Uda, I. Sato, T. Itoh, T. Imanaka, S. Fujiwara
    • Journal Title

      Biosci. Biotechnol. Biochem. 73(1)

      Pages: 104-108

    • Peer Reviewed
  • [Journal Article] Expression profiles and physiological roles of two types of molecular chaperonins from the hyperthermophilic archaeon, Thermococcus kodakaraensis2008

    • Author(s)
      S. Fujiwara, R. Aki, M. Yoshida, H. Higashibata, T. Imanaka, W. Fukuda
    • Journal Title

      Appl. Environ. Microbiol. 74(23)

      Pages: 7306-7312

    • Peer Reviewed
  • [Journal Article] Archaeal RNA polymerase subunits E and F are not required for transcription in vitro, but a Thermococcus kodakaraensis mutant lacking subunit F is temperature-senseitive2008

    • Author(s)
      A. Hirata, T. Kanai, T.J. Santangelo, M. Tajiri, K. Manabe, J.N. Reeve, T. Imanaka, K.S. Murakami
    • Journal Title

      Mol. Microbiol. 70(3)

      Pages: 623-633

    • Peer Reviewed
  • [Journal Article] Expression profiles and physiological roles of two types of prefoldins from the hyperthermophilic archaeon Thermococcus kodakaraensis2008

    • Author(s)
      A. Danno, W. Fukuda, M. Yoshida, R. Aki, T. Tanaka, T. Kanai, T. Imanaka, S. Fujiwara
    • Journal Title

      J. Mol. Biol. 382(2)

      Pages: 298-31

    • Peer Reviewed
  • [Journal Article] Agmatine is essential for the cell growth of Thermococcus kodakaraensis2008

    • Author(s)
      W. Fukuda, N. Morimoto, T. Imanaka, S. Fujiwara
    • Journal Title

      FEMS Microbiol. Lett. 287(1)

      Pages: 113-120

    • Peer Reviewed
  • [Journal Article] Functional characterization of recombinant prefoldin complexes from a hyperthermophilic archaeon, Thermococcus sp. strain KS-12008

    • Author(s)
      R. Iizuka, Y. Sugano, N. Ide, A. Ohtaki, T. Yoshida, S. Fujiwara, T. Imanaka, M. Yohda
    • Journal Title

      J. Mol. Biol. 377(3)

      Pages: 972-983

    • Peer Reviewed
  • [Journal Article] Polarity in archaealoperon transcription in Thermococcus kodakaraensis2008

    • Author(s)
      T. Santangelo, L. Cubonova, R. Matsumi, H. Atomi, T. Imanaka, J.N. Reeve
    • Journal Title

      J. Bacteriol. 190(6)

      Pages: 2244-2248

    • Peer Reviewed
  • [Journal Article] Effective approaches for the production of heterologous proteins using the Thermococcus kodakaraensis-based translation system2008

    • Author(s)
      T. Endoh, T. Kanai, T. Imanaka
    • Journal Title

      J. Biotechnol. 133(2)

      Pages: 177-182

    • Peer Reviewed
  • [Journal Article] A global transcriptional regulator in Thermococcus kodakaraensis controls the expression levels of both glycolytic and gluconeogenic enzyme-encoding genes2007

    • Author(s)
      T. Kanai, J. Akerboom, S. Takedomi, H.J.G. van de Werken, F. Blombach, J. van derOost, T. Murakami, H. Atomi, T. Imanaka
    • Journal Title

      J. Biol. Chem. 282(46)

      Pages: 33659-33670

    • Peer Reviewed
  • [Journal Article] Crystallization and preliminary X-ray crystallographic study of [NiFe]-hydrogenase maturation factor HypE from Thermococcus kodakaraensis KOD12007

    • Author(s)
      T. Arai, S. Watanabe, R. Matsumi, H. Atomi, T. Imanaka, K. Miki
    • Journal Title

      ActaCrystallogrhaph. Sect. F. 63(Pt9)

      Pages: 765-767

    • Peer Reviewed
  • [Journal Article] A novel ADP-forming succinyl-CoAsynthetase in Thermococcus kodakaraensis structurally related to the archaeal NDP-forming acetyl-CoAsynthetases2007

    • Author(s)
      K. Shikata, T. Fukui, H. Atomi, T. Imanaka
    • Journal Title

      J. Biol. Chem. 282(37)

      Pages: 26963-26970

    • Peer Reviewed
  • [Journal Article] Methioninesulfoxidereductase from the hyperthermophilic archaeon Thermococcus kodakaraensis, an enzyme designed to function at sub-optimal growth temperatures2007

    • Author(s)
      E. Fukushima, Y. Shinka, T. Fukui, H. Atomi, T. Imanaka
    • Journal Title

      J. Bacteriol. 189(19)

      Pages: 7134-7144

    • Peer Reviewed
  • [Journal Article] A highly productive system for cell-free protein synthesis using a lysate of the hyperthermophilic archaeon, Thermococcus kodakaraensis2007

    • Author(s)
      T. Endoh, T. Kanai, T. Imanaka
    • Journal Title

      Appl. Microbiol. Biotechnol. 74(5)

      Pages: 1153-1161

    • Peer Reviewed
  • [Journal Article] Phosphoenolpyruvatesynthase plays an essential role for glycolysis in the modified Embden-Meyerhof pathway in Thermococcus kodakarensis2006

    • Author(s)
      H. Imanaka, A. Yamatsu, T. Fukui, H. Atomi, T. Imanaka
    • Journal Title

      Mol. Microbiol. 61(4)

      Pages: 898-909

    • Peer Reviewed
  • [Journal Article] A novel branching enzyme of the GH-57 family in the hyperthermophilic archaeon, Thermococcus kodakaraensis KOD12006

    • Author(s)
      T. Murakami, T. Kanai, H. Takata, T. Kuriki, T. Imanaka
    • Journal Title

      J. Bacteriol. 188(16)

      Pages: 5915-5924

    • Peer Reviewed
  • [Journal Article] The ribulosemonophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis2006

    • Author(s)
      I. Orita, T. Sato, H. Yurimoto, N. Kato, H. Atomi, T. Imanaka, Y. Sakai
    • Journal Title

      J. Bacteriol. 188(13)

      Pages: 4698-4706

    • Peer Reviewed
  • [Journal Article] Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD12006

    • Author(s)
      H. Matsumura, H. Takahashi, T. Inoue, T. Yamamoto, H. Hashimoto, M. Nishioka, S. Fujiwara, M. Takagi, T. Imanaka, Y. Kai
    • Journal Title

      Proteins 63(3)

      Pages: 711-715

    • Peer Reviewed
  • [Journal Article] Biochemical properties of a putative signal peptide peptidase from the hyperthermophilic archaeon Thermococcus kodakaraensis KOD12005

    • Author(s)
      R. Matsumi, H. Atomi, T. Imanaka
    • Journal Title

      J. Bacteriol. 187(20)

      Pages: 7072-7080

    • Peer Reviewed
  • [Journal Article] Structure of RadBrecombinase from a hyperthermophilic archaeon, Thermococcus kodakaraensis KOD1: An implication for the formation of a near-seven-fold helical assembly2005

    • Author(s)
      T. Akiba, N. Ishii, N. Rashid, M. Morikawa, T. Imanaka, K. Harata
    • Journal Title

      Nucleic Acids Res. 33(10)

      Pages: 3412-3423

    • Peer Reviewed
  • [Journal Article] Enzymatic and structural characterization of type II isopentenyldiphosphateisomerase from hyperthermophilic archaeon Thermococcus kodakaraensis2005

    • Author(s)
      M.A. Siddiqui, A. Yamanaka, K. Hirooka, T. Bamaba, A. Kobayashi, T. Imanaka, E. Fukusaki, S. Fujiwara
    • Journal Title

      Biochem. Biophys. Res. Commun. 331(4)

      Pages: 1127-1136

    • Peer Reviewed
  • [Journal Article] Improved and versatile transformation system allowing multiple genetic manipulations of the hyperthermophilic archaeon Thermococcus kodakaraensis2005

    • Author(s)
      T. Sato, T. Fukui, H. Atomi, T. Imanaka
    • Journal Title

      Appl. Environ. Microbiol. 71(7)

      Pages: 3889-3899

    • Peer Reviewed
  • [Journal Article] Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes2005

    • Author(s)
      T. Fukui, H. Atomi, T. Kanai, R. Matsumi, S. Fujiwara, T. Imanaka
    • Journal Title

      Genome Res. 15(3)

      Pages: 352-363

    • Peer Reviewed
  • [Journal Article] Characterization of an archaealmalic enzyme from the hyperthermophilic archaeon Thermococcus kodakaraensis KOD12005

    • Author(s)
      W. Fukuda, Y.S. Ismail, T. Fukui, H. Atomi, T. Imanaka
    • Journal Title

      Archaea 1(5)

      Pages: 293-301

    • Peer Reviewed
  • [Journal Article] Continuous hydrogen production by the hyperthermophilic archaeon, Thermococcus kodakaraensis KOD12005

    • Author(s)
      T. Kanai, H. Imanaka, A. Nakajima, K. Uwamori, Y. Omori, T. Fukui, H. Atomi, T. Imanaka
    • Journal Title

      J. Biotechnol. 116(3)

      Pages: 271-282

    • Peer Reviewed
  • [Presentation] 超好熱始原菌をベースとする原始的炭酸固定菌の作出2010

    • Author(s)
      松原正晃
    • Organizer
      日本農芸化学会2010年度大会
    • Place of Presentation
      東大駒場キャンパス(東京都)
    • Year and Date
      2010-03-29
  • [Presentation] Cell-free protein synthesis at high temperatures using the lysate of a hyperthermophile2010

    • Author(s)
      金井保
    • Organizer
      PepCon 2010
    • Place of Presentation
      北京(中国)
    • Year and Date
      2010-03-22
  • [Presentation] GFP synthesis in giant liposomes using the in vitro translation system of Thermococcus kodakaraensis2009

    • Author(s)
      金井保
    • Organizer
      MHS2009
    • Place of Presentation
      名古屋大学(愛知県)
    • Year and Date
      2009-11-10
  • [Presentation] 超好熱始原菌Thermococcus kodakaraensisを用いたin vitro転写・翻訳カップリング反応系の構築2009

    • Author(s)
      池上大二郎
    • Organizer
      極限環境微生物学会
    • Place of Presentation
      明治大学(東京都)
    • Year and Date
      2009-10-28
  • [Presentation] 超好熱始原菌の生体成分を用いた無細胞タンパク合成系の改良とその利用2009

    • Author(s)
      山地和明
    • Organizer
      無細胞生命科学研究会
    • Place of Presentation
      弘前大学(青森県)
    • Year and Date
      2009-03-16
  • [Presentation] Cell-free expression of operon genes at high temperature2008

    • Author(s)
      金井保
    • Organizer
      MHS2008
    • Place of Presentation
      名古屋大学(愛知県)
    • Year and Date
      2008-11-07
  • [Presentation] Cell-free synthesis of GFP under high temperature conditions2007

    • Author(s)
      金井保
    • Organizer
      MHS2007
    • Place of Presentation
      名古屋大学(愛知県)
    • Year and Date
      2007-11-12
  • [Presentation] Cell-free protein synthesis at high temperature using a lysate of a hyperthermophile2006

    • Author(s)
      金井保
    • Organizer
      MHS2006
    • Place of Presentation
      名古屋大学(愛知県)
    • Year and Date
      2006-11-06
  • [Presentation] 高温下での無細胞タンパク生産系の開発2006

    • Author(s)
      金井保
    • Organizer
      日本化学会バイオ関連化学合同シンポジウム
    • Place of Presentation
      京都大学桂キャンパス(京都府)
    • Year and Date
      2006-09-28
  • [Presentation] Cell-free protein synthesis at high temperature using a lysate of Thermococcus kodakaraensis2006

    • Author(s)
      遠藤太志
    • Organizer
      Extremophiles2006
    • Place of Presentation
      Brest(France)
    • Year and Date
      2006-09-20
  • [Presentation] Complete genome analysis and development of gene disruption technology in the hyperthermophilic archaeon, Thermococcus kodakaraensis2005

    • Author(s)
      今中忠行
    • Organizer
      MHS 2005
    • Place of Presentation
      名古屋大学(愛知県)
    • Year and Date
      2005-11-09
  • [Book] 微生物と共生しよう2006

    • Author(s)
      今中忠行
    • Total Pages
      99
    • Publisher
      ケイ・ディー・ネオブック
  • [Remarks]

    • URL

      http://www.ritsumei.ac.jp/lifescience/skbiot/imanaka/HPtop.html

  • [Patent(Industrial Property Rights)] 無細胞タンパク質合成系によるタンパク質の製造方法2005

    • Inventor(s)
      今中忠行、金井保、跡見晴幸、遠藤太志
    • Industrial Property Rights Holder
      京都大学
    • Industrial Property Number
      特許特願2005-112899
    • Filing Date
      2005-04-08

URL: 

Published: 2011-06-18   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi