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2009 Fiscal Year Final Research Report

Molecular mechanism of a recovery from stalled replication forks coupled with homologous recombination and its regulation

Research Project

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Project/Area Number 17080007
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionYokohama City University

Principal Investigator

IWASAKI Hiroshi  Yokohama City University, 大学院・生命理工学研究科, 教授 (60232659)

Project Period (FY) 2005 – 2009
Keywords相同組換え / 複製フォーク / チェックポイント / DNA二重鎖切断 / DNA修復 / リコンビナーゼ / Holliday構造 / 試験管内再構成系
Research Abstract

Homologous recombination (HR) plays a crucial role in a recovery from stalled replication forks. Our long-term end is to elucidate molecular mechanism of a coupling reaction and a functional inter-play between DNA replication and HR. For this end, we cut into molecular mechanisms of key reactions for HR such as DNA strand exchange reaction and the Holliday intermediate formation. During the period of this study section, we established an in vitro reconstitution system of Swi5-Sfr1-Rad22-Rad51-dependent strand exchange reaction and Holliday junction formation. One of the most important findings is the 3' to 5' direction of formation and branch migration of Holliday junction.

  • Research Products

    (31 results)

All 2009 2008 2007 2006 2005 Other

All Journal Article (15 results) (of which Peer Reviewed: 15 results) Presentation (14 results) Book (1 results) Remarks (1 results)

  • [Journal Article] Nbs1 flexibly tethers Ctp1 and Mre11-Rad50 to coordinate DNA double-strand break processing and repair.2009

    • Author(s)
      Williams RS, Dodson GE, Limbo O, Yamada Y, Williams JS, Guenther G, Classen S, Glover JN, Iwasaki H, Russell P, Tainer JA.
    • Journal Title

      Cell 139

      Pages: 87-99

    • Peer Reviewed
  • [Journal Article] RAD6-RAD18-RAD5 pathway-dependent tolerance to chronic low-dose UV light.2009

    • Author(s)
      Hishida T, Kubota Y, Carr AM, Iwasaki H.
    • Journal Title

      Nature 457

      Pages: 612-615

    • Peer Reviewed
  • [Journal Article] A DNA polymeraseαaccessory protein, Mcl1, is required for propagation of centromere structures in fission yeast.2008

    • Author(s)
      Natsume T, Tsutsui Y, Toda T, Dunleavy EM, Pidoux AL, Iwasaki H, Shirahige K, Allshire RC, Yamao F.
    • Journal Title

      PLoS One 3

      Pages: e2221

    • Peer Reviewed
  • [Journal Article] Molecular characterization of the Schizosaccharomyces pombe nip1+/ctp1+ gene in DNA double strand break repair in association with the Mre11-Rad50-Nbs1 complex.2008

    • Author(s)
      Akamatsu Y, Murayama Y, Yamada T, Nakazaki T, Tsutsui Y, Ohta K, Iwasaki H.
    • Journal Title

      Mol. Cell. Biol. 28

      Pages: 3639-3651

    • Peer Reviewed
  • [Journal Article] Mus81 is essential for sister chromatid recombination at broken replication forks.2008

    • Author(s)
      Roseaulin L, Yamada Y, Tsutsui Y, Russell P, Iwasaki H, Arcangioli B.
    • Journal Title

      EMBO J. 27

      Pages: 1378-1387

    • Peer Reviewed
  • [Journal Article] Reconstitution of DNA strand exchange mediated by Rhp51 recombinase and two mediators.2008

    • Author(s)
      Kurokawa Y, Murayama Y, Haruta- Takahashi N, Urabe I, Iwasaki H.
    • Journal Title

      PLoS Biol. 6

      Pages: e88

    • Peer Reviewed
  • [Journal Article] Formation and branch migration of Holliday junctions mediated by eukaryotic recombinases.2008

    • Author(s)
      Murayama Y, Kurokawa Y, Mayanagi K, Iwasaki H.
    • Journal Title

      Nature 451

      Pages: 1018-1021

    • Peer Reviewed
  • [Journal Article] Fission yeast Swi5 protein, a novel DNA recombination mediator.2008

    • Author(s)
      Haruta N, Akamatsu Y, Tsutsui Y, Kurokawa Y, Murayama Y, Arcangioli B, Iwasaki H.
    • Journal Title

      DNA Repair (Amst) 7

      Pages: 1-9

    • Peer Reviewed
  • [Journal Article] Fission yeast Swi5/Sfr1 and Rhp55/Rhp57 differentially regulate Rhp51-dependent recombination outcomes.2007

    • Author(s)
      Akamatsu Y, Tsutsui Y, Morishita T, Siddique, MDP, Kurokawa, Y. Ikeguchi M, Yamao F, Arcangioli B, Iwasaki H.
    • Journal Title

      EMBO J. 26

      Pages: 1352-1362

    • Peer Reviewed
  • [Journal Article] The Swi5-Sfr1 complex stimulates Rad51- and Dmc1-mediated DNA strand exchange in vitro. Nat. Struct.2006

    • Author(s)
      Haruta N, Kurokawa Y, Murayama Y, Akamatsu Y, Unzai S, Tsutsui Y, Iwasaki H.
    • Journal Title

      Mol. Biol. 13

      Pages: 823-730

    • Peer Reviewed
  • [Journal Article] Direct observation of DNA rotation during branch migration of Holliday junction DNA by Escherichia coli RuvA-RuvB protein complex.2006

    • Author(s)
      Han YW, Tani T, Hayashi M, Hishida T, Iwasaki H, Shinagawa H, Harada Y.
    • Journal Title

      Proc. Natl. Acad. Sci. USA. 103

      Pages: 11544-11548

    • Peer Reviewed
  • [Journal Article] Role of the Schizosaccharomyces pombe F-box DNA helicase in processing recombination intermediates.2005

    • Author(s)
      Morishita T, Furukawa F, Sakaguchi C, Toda T, Carr AM, Iwasaki H, Shinagawa H.
    • Journal Title

      Mol. Cell. Biol. 25

      Pages: 8074-8083

    • Peer Reviewed
  • [Journal Article] Structure-function analysis of the three domains of RuvB motor protein.2005

    • Author(s)
      Ohnishi T, Hishida T, Harada Y, Iwasaki H, Shinagawa H.
    • Journal Title

      J. Biol. Chem. 280

      Pages: 30504-30510

    • Peer Reviewed
  • [Journal Article] Genetic and physical interactions between Schizosaccharomyces pombe Mcl1 and Rad2, Dna2 and DNA polymerase alpha: evidence for a multifunctional role of Mcl1 in DNA replication and repair.2005

    • Author(s)
      Tsutsui Y, Morishita T, Natsume T, Yamashita K, Iwasaki H, Yamao F, Shinagawa H.
    • Journal Title

      Curr. Genet. 48

      Pages: 34-43

    • Peer Reviewed
  • [Journal Article] Functional overlap between RecA and MgsA (RarA) in the rescue of stalled replication forks in Escherichia coli.2005

    • Author(s)
      Shibata T, Hishida T, Kubota Y, Han YW, Iwasaki H, Shinagawa H.
    • Journal Title

      Genes Cells. 10

      Pages: 181-191

    • Peer Reviewed
  • [Presentation] Biochemical analysis of fission yeast recombinaes and their auxiliary proteins.2009

    • Author(s)
      Iwasaki H.
    • Organizer
      The Fifth International Fission Yeast Meeting (Pombe 2009).
    • Place of Presentation
      Yoyogi Olympic Memorial Centre, Tokyo.
    • Year and Date
      20091026-20091103
  • [Presentation] Regulation of strand exchange reactions by mediator proteins.2009

    • Author(s)
      Iwasaki H.
    • Organizer
      FASEB summer conference on " Genetic Recombination and Chromosome Rearrangements".
    • Place of Presentation
      Snowmass, Colorado, USA.
    • Year and Date
      20090802-20090807
  • [Presentation] Biochemical analyses of the Swi5-Sfr1 complex on the two different recombainses in fission yeast.2008

    • Author(s)
      Iwasaki, H.
    • Organizer
      The 6th international 3R symposium.
    • Place of Presentation
      Tsumagoi Resort, Kakegawa, Shizuoka.
    • Year and Date
      20081027-20081030
  • [Presentation] 相同組換えにおけるDNA鎖交換の反応機構2008

    • Author(s)
      岩崎博史
    • Organizer
      第80回日本遺伝学会大会
    • Place of Presentation
      名古屋大学工学部
    • Year and Date
      20080903-20080905
  • [Presentation] DNA strand exchange reactions mediated by the fission yeast recombinase Rhp51 (spRad51) and its mediators, Rad22 (spRad52) and Swi5-Sfr1.2008

    • Author(s)
      Iwasaki, H.
    • Organizer
      EMBO Conference Series on Recombination Mechanism.
    • Place of Presentation
      Il Ciocco, Italy.
    • Year and Date
      20080519-20080523
  • [Presentation] The fission yeast nip1+ gene, which is involved in DNA double strand break repair togehter with the Mre11-Rad50-Nbs1 complex, is a functional counterpart Saccharomyces Sae2/Com1 and mammalian CtIP.2008

    • Author(s)
      Akamatsu Y, Yasuto Murayama Y, Yamada T, Tsutsui Y, Ohta K, Iwasaki H.
    • Organizer
      DNA Replication and Recombination in Keystone Symposia.
    • Place of Presentation
      Eldorado Hotel & Spa, Santa Fe, New Mexico, USA.
    • Year and Date
      20080210-20080215
  • [Presentation] 分裂酵母Rhp51リコンビナーゼによるDNA鎖交換反応のメカニズム, 4S17シンポジ2007

    • Author(s)
      岩崎博史
    • Organizer
      日本分子生物学会日本生化学会合同年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      20071211-20071215
  • [Presentation] Biochemical analysis of DNA strand exchange reactions mediated by fission yeast recombinase Rhp51.2007

    • Author(s)
      Iwasaki, H.
    • Organizer
      The 2nd International Symposium on Chromosome Dynamics.
    • Place of Presentation
      Senri-life science Center, Osaka.
    • Year and Date
      20071107-20071108
  • [Presentation] The Swi5-Sfr1 protein complex, a novel recombination mediator in fission yeast.2007

    • Author(s)
      Iwasaki H.
    • Organizer
      The 4th International Fission Yeast Meeting (Pombe 2007)
    • Place of Presentation
      Copenhagen, Denmark.
    • Year and Date
      20070611-20070616
  • [Presentation] Reconstitution of Rhp51 (spRad51)-dependent DNA strand exchange reaction during HR repair in fission yeast.2007

    • Author(s)
      Iwasaki, H.
    • Organizer
      The 3rd US-Japan DNA repair meeting.
    • Place of Presentation
      Akiu, Miyagi.
    • Year and Date
      20070507-20070511
  • [Presentation] 試験管内再構成系を用いた相同組換え反応の解析, 2006フォーラム. 分子生物学の未来2006

    • Author(s)
      岩崎博史
    • Organizer
      日本分子生物学会
    • Place of Presentation
      名古屋国際会議場
    • Year and Date
      20061206-20061208
  • [Presentation] Two parallel sub-pathways in Rad51-dependebt recombination repair in fission yeast.2005

    • Author(s)
      Iwasaki H.
    • Organizer
      The 5th international 3R symposium.
    • Place of Presentation
      Awaji, Hyogo, Japan.
    • Year and Date
      20051113-20051117
  • [Presentation] In vivo evidence that an S. pombe Swi5/Sfr1 complex is a novel Rad51 mediator.2005

    • Author(s)
      Iwasaki H.
    • Organizer
      The51st NIBB Conference, New Aspects of Gene Amplification: Mechanisms and Biological Function.
    • Place of Presentation
      Okazaki, Japan.
    • Year and Date
      20051105-20051108
  • [Presentation] Two Rad51-dependent recombination repair pathways in fission yeast.2005

    • Author(s)
      Iwasaki H.
    • Organizer
      XXIIth International conference on yeast genetics and molecular biology.
    • Place of Presentation
      Bratislava, Slovakia.
    • Year and Date
      20050807-20050812
  • [Book] 中低圧カラムクロマトグラフィー ~タンパク質の簡便な分離精製~. 実験医学別冊生命科学のための機器分析実験ハンドブック(西村善文編)2007

    • Author(s)
      黒川裕美子, 岩崎博史
    • Total Pages
      267-273
    • Publisher
      羊土社
  • [Remarks]

    • URL

      http://www.iwasakilab.bio.titech.ac.jp/

URL: 

Published: 2011-06-18   Modified: 2016-04-21  

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