• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to project page

2009 Fiscal Year Final Research Report

Analysis of gene amplification that is promoted by DNA replication and homologous recombination

Research Project

  • PDF
Project/Area Number 17080010
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionNational Institute of Genetics (2006-2009)
National Institute for Basic Biology (2005)

Principal Investigator

KOBAYASHI Takehiko  National Institute of Genetics, 細胞遺伝研究系, 教授 (40270475)

Project Period (FY) 2005 – 2009
KeywordsリボソームRNA遺伝子 / 遺伝子増幅 / ゲノムの安定性 / 非コード転写 / 細胞老化
Research Abstract

The ribosomal RNA genes (rDNA) are one of the most fragile sites for deletional recombination. Even though the rDNA is susceptible to this kind of instability, each organism maintains a specific copy number of rDNA, thereby indicating presence of a mechanism for the maintenance of copy number. I revealed that there is a gene amplification system to maintain the copy number. Moreover, I found that rDNA instability was a cause of cellular senescence.

  • Research Products

    (63 results)

All 2010 2009 2008 2007 2006 2005 Other

All Journal Article (19 results) (of which Peer Reviewed: 19 results) Presentation (34 results) Book (1 results) Remarks (9 results)

  • [Journal Article] Abundance of ribosomal RNA gene copies maintains genome integrity.2010

    • Author(s)
      Ide S, Miyazaki T, Maki H., Kobayashi T
    • Journal Title

      Science 327

      Pages: 693-696

    • Peer Reviewed
  • [Journal Article] The effect of replication initiation on gene amplification in the rDNA and its relationship to aging.2009

    • Author(s)
      Ganley ARD, Ide S, Saka K, Kobayashi T.
    • Journal Title

      Mol. Cell 35

      Pages: 683-693

    • Peer Reviewed
  • [Journal Article] リボソームRNA遺伝子の新しい機能2009

    • Author(s)
      小林武彦
    • Journal Title

      化学と生物 47・2

      Pages: 104-110

    • Peer Reviewed
  • [Journal Article] 複製、組換え、転写のコラボレーションによる遺伝子増幅2009

    • Author(s)
      小林武彦
    • Journal Title

      蛋白質・核酸・酵素

    • Peer Reviewed
  • [Journal Article] A new role of the rDNA and nucleolus in the nucleus- rDNA instability maintains genome integrity-.2008

    • Author(s)
      Kobayashi T
    • Journal Title

      BioEssays 30

      Pages: 267-272

    • Peer Reviewed
  • [Journal Article] Highly efficient concerted evolution in the ribosomal DNA repeats: total rDNA repeat variation revealed by whole-genome shotgun sequence data.2007

    • Author(s)
      Ganley ARD, Kobayashi T
    • Journal Title

      Genome Research 17

      Pages: 184-191

    • Peer Reviewed
  • [Journal Article] Assembly of regulatory factors on rRNA and ribosomal protein genes in Saccharomyces cerevisiae.2007

    • Author(s)
      Kasahara K, Ohtsuki K, Ki S, Kobayashi T. Shirahige K, Kokubo T
    • Journal Title

      Mol. Cell. Biol 27

      Pages: 6686-6705

    • Peer Reviewed
  • [Journal Article] Abnormality in initiation program of DNA replication is monitored by the highly repetitive rRNA gene array on chromosome XII in budding yeast.2007

    • Author(s)
      Ide S, Watanabe K, Watanabe H, Shirahige K, Kobayashi T, Maki H
    • Journal Title

      Mol. Cell. Biol. 27

      Pages: 568-578

    • Peer Reviewed
  • [Journal Article] Phylogenetic footprinting to find functional DNA elements.2007

    • Author(s)
      Ganley ARD, Kobayashi T
    • Journal Title

      Methods in Molecular Biology(Humana press)

      Pages: 367-379

    • Peer Reviewed
  • [Journal Article] ガンレイオーステン系統発生学的フットプリントによる機能性DNA2007

    • Author(s)
      小林武彦
    • Journal Title

      配列の同定」遺伝 21

      Pages: 265-268

    • Peer Reviewed
  • [Journal Article] 複製フォークと組換えの共役による遺伝子増幅の制御2007

    • Author(s)
      小林武彦
    • Journal Title

      実験医学 25

      Pages: 635-641

    • Peer Reviewed
  • [Journal Article] Strategies to maintain the stability of the ribosomal RNA gene repeats.2006

    • Author(s)
      Kobayashi T
    • Journal Title

      Genes Genet. Syst. 81

      Pages: 155-161

    • Peer Reviewed
  • [Journal Article] noncodingな転写がrDNAのコピー数を調節する2006

    • Author(s)
      小林武彦
    • Journal Title

      蛋白質・核酸・酵素 51

      Pages: 2141-2143

    • Peer Reviewed
  • [Journal Article] rDNAの恒常性の維持機構2006

    • Author(s)
      小林武彦
    • Journal Title

      細胞工学 25

      Pages: 481-485

    • Peer Reviewed
  • [Journal Article] 酵母の老化制御機構2006

    • Author(s)
      小林武彦
    • Journal Title

      医学のあゆみ 217巻、7号

      Pages: 743-747

    • Peer Reviewed
  • [Journal Article] Recombination regulation by transcription-induced cohesin dissociation in rDNA repeats2005

    • Author(s)
      Kobayashi T. Ganley ARD
    • Journal Title

      Science 309

      Pages: 1581-1584

    • Peer Reviewed
  • [Journal Article] Identifying gene-independent noncoding functional elements in the yeast ribosomal DNA by phylogenetic footprinting.2005

    • Author(s)
      Ganley ARD, Hayashi, K, Horiuchi T. Kobayashi T.
    • Journal Title

      Proc. Natl. Acad. Sci. USA 102

      Pages: 11787-11792

    • Peer Reviewed
  • [Journal Article] 酵母を使った老化研究-rDNA仮説を中心に2005

    • Author(s)
      小林武彦
    • Journal Title

      基礎老化研究 29

      Pages: 7-11

    • Peer Reviewed
  • [Journal Article] Analysis of DNA Replication in S. cerevisiae by Two-Dimensional and Pulsed-Field Gel Electrophoresis.

    • Author(s)
      Ide S, Kobayashi T
    • Journal Title

      Curr. Prot (n press)

    • Peer Reviewed
  • [Presentation] Recovery of rDNA stability contributes to rejuvenation in yeast.2009

    • Author(s)
      小林武彦
    • Organizer
      分子生物学会シンポジウム
    • Place of Presentation
      横浜
    • Year and Date
      20091200
  • [Presentation] he effect of replication initiation on gene amplification in the rDNA and its relationship to aging.2009

    • Author(s)
      小林武彦
    • Organizer
      International Symposium on chromosome cycle and genome dynamics
    • Place of Presentation
      栃木県那須
    • Year and Date
      20091100
  • [Presentation] rDNAの不安定化と細胞老化複製組換え修復ワークショップ2009

    • Author(s)
      小林武彦
    • Place of Presentation
      滋賀
    • Year and Date
      20091100
  • [Presentation] リボソームRNA遺伝子のExtra copy2009

    • Author(s)
      小林武彦
    • Organizer
      の機能酵母遺伝学フォーラム
    • Place of Presentation
      つくば市
    • Year and Date
      20090700
  • [Presentation] リボゾームRNA遺伝子が過剰に存在する理由2008

    • Author(s)
      小林武彦
    • Organizer
      子生物学会シンポジウム
    • Place of Presentation
      神戸
    • Year and Date
      20081200
  • [Presentation] The effect of replication initiation on gene amplification in the rDNA and its relationship to aging.2008

    • Author(s)
      小林武彦
    • Organizer
      International Symposium for 3R
    • Place of Presentation
      静岡県掛川市
    • Year and Date
      20081000
  • [Presentation] リボソームRNA遺伝子の安定性2008

    • Author(s)
      小林武彦
    • Organizer
      と細胞の老化機構酵母遺伝学フォーラム
    • Place of Presentation
      札幌
    • Year and Date
      20080900
  • [Presentation] The effect of replication initiation on gene amplification in the rDNA and its relationship to aging.2008

    • Author(s)
      小林武彦
    • Organizer
      nternational Symposium on Chromosome Dynamics
    • Place of Presentation
      三重県伊勢市
    • Year and Date
      20080500
  • [Presentation] リボソームRNA遺伝子の安定性と細胞の老化機構DNA組換え2008

    • Author(s)
      小林武彦
    • Organizer
      複製合同ワークショップ
    • Place of Presentation
      修善寺
    • Year and Date
      20080300
  • [Presentation] リボソームRNA遺伝子のゲノム維持における役割2007

    • Author(s)
      小林武彦
    • Organizer
      第30回日本分子生物学会BMB2007
    • Place of Presentation
      横浜
    • Year and Date
      20071200
  • [Presentation] リボソームRNA遺伝子のゲノム維持における役割International Symposium2007

    • Author(s)
      小林武彦
    • Organizer
      Genome Stability & Instability
    • Place of Presentation
      大阪
    • Year and Date
      20071100
  • [Presentation] Strategies to maintain the stability of the ribosomal RNA gene2007

    • Author(s)
      小林武彦
    • Organizer
      repeats RNA polymerase I transcription
    • Place of Presentation
      レーゲンスブルグドイツ
    • Year and Date
      20071000
  • [Presentation] リボソームRNA遺伝子の不安定性がもたらす細胞の老化機構2007

    • Author(s)
      小林武彦
    • Organizer
      第79回日本遺伝学会シンポジウムリボソーム
    • Place of Presentation
      岡山
    • Year and Date
      20070900
  • [Presentation] リボソームRNA遺伝子のゲノム維持における役割2007

    • Author(s)
      小林武彦
    • Organizer
      酵母遺伝学フォーラム
    • Place of Presentation
      大阪
    • Year and Date
      20070900
  • [Presentation] rDNAのコピー数調節機構2007

    • Author(s)
      小林武彦
    • Organizer
      とExtracoding function RNA若手の会
    • Place of Presentation
      神戸
    • Year and Date
      20070900
  • [Presentation] Strategies to maintain the stability of the ribosomal RNA gene repeats2007

    • Author(s)
      小林武彦
    • Organizer
      Ribosomes: from structure to gene expression and beyond
    • Place of Presentation
      アーバイン、米国
    • Year and Date
      20070400
  • [Presentation] リボソームRNA遺伝子のExtra-coding機構2006

    • Author(s)
      小林武彦
    • Organizer
      日本分子生物学会2006フォーラム
    • Place of Presentation
      名古屋
    • Year and Date
      20061200
  • [Presentation] 複製と組み換えの共役による遺伝子増幅機構の解析2006

    • Author(s)
      小林武彦
    • Organizer
      組換え、染色体再編ワークショップ
    • Place of Presentation
      兵庫県淡路島
    • Year and Date
      20061100
  • [Presentation] 複製開始活性が遺伝子の増幅に与える影響2006

    • Author(s)
      小林武彦
    • Organizer
      第18回DNA複製・分配ワークショップ
    • Place of Presentation
      熱海市
    • Year and Date
      20061000
  • [Presentation] 系統発生学的フットプリント法による機能性DNA配列の同定2006

    • Author(s)
      小林武彦
    • Organizer
      日本遺伝学会第78回大会
    • Place of Presentation
      つくば市
    • Year and Date
      20060900
  • [Presentation] DNA複製開始活性はrDNAの増幅に必要である2006

    • Author(s)
      小林武彦
    • Organizer
      酵母遺伝学フォーラム
    • Place of Presentation
      三島市
    • Year and Date
      20060700
  • [Presentation] Replication initiation regulates rDNA amplification2006

    • Author(s)
      小林武彦
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology
    • Place of Presentation
      京都
    • Year and Date
      20060600
  • [Presentation] Replication initiation regulates rDNA amplification2006

    • Author(s)
      小林武彦
    • Organizer
      The Chromosome Cycle
    • Place of Presentation
      東京
    • Year and Date
      20060600
  • [Presentation] How are repeated genes maintained?2006

    • Author(s)
      小林武彦
    • Organizer
      パスツール研究所招待セミナー
    • Place of Presentation
      パリ、フランス
    • Year and Date
      20060500
  • [Presentation] Strategies to maintain the stability of the ribosomal RNA gene repeats IGH2006

    • Author(s)
      小林武彦
    • Organizer
      CNRS研究所招待セミナー
    • Place of Presentation
      モンペリエ、フランス
    • Year and Date
      20060500
  • [Presentation] Recombination Regulation by Transcription-induced Cohesin Dissociation in Yeast rDNA repeats2005

    • Author(s)
      小林武彦
    • Organizer
      第28回日本分子生物学会
    • Place of Presentation
      福岡
    • Year and Date
      20051200
  • [Presentation] Mechanisms to keep the stability of the ribosomal RNA gene cluster in yeast2005

    • Author(s)
      小林武彦
    • Organizer
      The 5th International symposium on DNA Replication, Recombination and Repair (3R)
    • Place of Presentation
      淡路島
    • Year and Date
      20051100
  • [Presentation] Gene amplification regulated by noncoding transcription2005

    • Author(s)
      小林武彦
    • Organizer
      International symposium New aspect of Gene Amplification
    • Place of Presentation
      岡崎
    • Year and Date
      20051100
  • [Presentation] 組換えを制御する新しい転写機構の発見2005

    • Author(s)
      小林武彦
    • Organizer
      第77回日本遺伝学会
    • Place of Presentation
      東京
    • Year and Date
      20050900
  • [Presentation] 組換えを制御する新しい転写機構の発見2005

    • Author(s)
      小林武彦
    • Organizer
      酵母遺伝学フォーラム
    • Place of Presentation
      千葉
    • Year and Date
      20050900
  • [Presentation] The nucleolus, rDNA and Aging2005

    • Author(s)
      小林武彦
    • Organizer
      第26回基礎老化学会シンポジウム
    • Place of Presentation
      東京
    • Year and Date
      20050600
  • [Presentation] How are repeated gene cluster maintained?2005

    • Author(s)
      小林武彦
    • Organizer
      The ICGEB Conference on "DNA replication and cell division
    • Place of Presentation
      トリエステ、イタリア
    • Year and Date
      20050500
  • [Presentation] Aging study in yeast2005

    • Author(s)
      小林武彦
    • Organizer
      国立長寿医療センター研究所公開セミナー
    • Place of Presentation
      大府市
    • Year and Date
      20050400
  • [Presentation] Extra-coding functions of ribosomal RNA gene repeats

    • Author(s)
      小林武彦
    • Organizer
      国際酵母遺伝学会メルボルンオーストラリア
  • [Book] 新老年学2010

    • Author(s)
      小林武彦
    • Total Pages
      265-271
    • Publisher
      東京大学出版会
  • [Remarks] 朝日新聞平成22年2月16日

  • [Remarks] 科学新聞平成22年2月

  • [Remarks] 朝日新聞平成21年9月25日

  • [Remarks] 科学新聞平成21年10月2日

  • [Remarks] 中日新聞平成21年9月11日

  • [Remarks] 東京新聞平成21年9月11日

  • [Remarks] 静岡新聞平成21年9月11日

  • [Remarks] 静岡新聞平成20年10月26日

  • [Remarks] 研究成果の公表を行うホームページ

    • URL

      http://www.nig.ac.jp/labs/CytoGen/

URL: 

Published: 2011-06-18   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi