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2009 Fiscal Year Final Research Report

Deep-sea deployment of a Microfabricated In Situ Gene Analysis System and Its Functional Sophistication

Research Project

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Project/Area Number 17106012
Research Category

Grant-in-Aid for Scientific Research (S)

Allocation TypeSingle-year Grants
Research Field Naval and maritime engineering
Research InstitutionThe University of Tokyo

Principal Investigator

FUJII Teruo  The University of Tokyo, 生産技術研究所, 教授 (30251474)

Co-Investigator(Kenkyū-buntansha) YAMAMOTO Takatoki  東京大学, 生産技術研究所, 助教 (20322688)
FUKUBA Tatsuhiro  東京大学, 生産技術研究所, 特任准教授 (80401272)
Project Period (FY) 2005 – 2009
Keywordsマイクロ流体デバイス / 現場分析装置 / 遺伝子解析 / 深海 / PCR / DNA精製 / 微生物 / ATP
Research Abstract

In this study, we developed an in situ gene analysis system that can be applied to oceanography. The system was successfully deployed in deep-sea environments to analyze microbial communities. By utilizing microfluidic devices, sample pre-treatment function was integrated. In situ microbial activity assay method was also established in this study. Corroborative work was carried out with Monterey Bay Aquarium Research Institute (MBARI) and it resulted in a successful evaluation of the system for red-tide plankton monitoring.

  • Research Products

    (24 results)

All 2009 2008 2007 2006 2005 Other

All Journal Article (6 results) (of which Peer Reviewed: 2 results) Presentation (16 results) Book (1 results) Remarks (1 results)

  • [Journal Article] Design Optimization and Evaluation of a Bioluminescence Detection Part on a Microfluidic Device for in situ ATP Quantification2009

    • Author(s)
      Y. Aoki, T. Fukuba, T. Yamamoto, T. Fujii
    • Journal Title

      IEEJ Trans.SM 129

      Pages: 73-76

    • Peer Reviewed
  • [Journal Article] 海底表層でのバイオマーカを利用したメタン漏洩検知技術の開発2008

    • Author(s)
      帆秋利洋, 福場辰洋, 藤井輝夫, 布施博之
    • Journal Title

      海洋と生物 177

      Pages: 505-515

  • [Journal Article] ガス漏洩モニタリング (間接検出法 : バイオマーカー利用モニタリング)―遺伝子マーカーによるメタン漏洩の原位置検出技術の開発―2008

    • Author(s)
      帆秋利洋, 沖田紀子, 布施博之, 福場辰洋, 藤井輝夫, 鋤崎俊二, 天石文, 片山美津瑠, 吉田光毅, 安田博和, 藤原靖
    • Journal Title

      月刊海洋 40

      Pages: 106-116

  • [Journal Article] 現場型遺伝子解析装置"IISA-Gene"の開発2006

    • Author(s)
      福場辰洋, 宮地輝光, 山本貴富喜, 藤井輝夫
    • Journal Title

      月刊海洋 38

      Pages: 871-876

  • [Journal Article] 海洋における現場計測分析技術の新展開―総説―2006

    • Author(s)
      藤井輝夫
    • Journal Title

      月刊海洋 38

      Pages: 825-830

  • [Journal Article] 極限環境微生物学のための現場型微生物遺伝子解析装置の開発2005

    • Author(s)
      福場辰洋, 山本貴富喜, 長沼毅, 藤井輝夫
    • Journal Title

      海の研究 14

      Pages: 361-368

    • Peer Reviewed
  • [Presentation] Development of Integrated In Situ Analyzers and its Application to Oceanography2009

    • Author(s)
      T. Fukuba, C. Provin, Y. Aoki, K. Okamura, K. Shitashima, T. Yamamoto, T. Fujii
    • Organizer
      PITTCON2009, Abstruct, (2060-9P)
    • Place of Presentation
      Chicago, USA
    • Year and Date
      20090508-20090513
  • [Presentation] Microbial Activity Assay in Deep-Sea Environment using a Microfluidic Device2009

    • Author(s)
      T. Fukuba, Y Aoki, T. Fujii
    • Organizer
      μTAS2009, Proceedings, (2010-2012)
    • Place of Presentation
      Jeju, Korea
    • Year and Date
      2009-11-05
  • [Presentation] PCR Based DNA Detection in Deep-Sea Environment2009

    • Author(s)
      T. Fukuba, M. Hiraga, A. Takamatsu, T. Fujii
    • Organizer
      μTAS2009, Proceedings(1279-1281)
    • Place of Presentation
      Jeju, Korea
    • Year and Date
      2009-11-03
  • [Presentation] Flow-through PCR装置によるDNAの定量2008

    • Author(s)
      平賀雅隆, 福場辰洋, 山本貴富喜, 高松敦子, 藤井輝夫
    • Organizer
      第17回化学とマイクロ・ナノシステム研究会 (17th CHEMINAS)要旨集, (57)
    • Place of Presentation
      福岡
    • Year and Date
      20080520-20080521
  • [Presentation] Development of "IISA-ATP" System for in situ Microbial Activity Assessment in Deep-sea Environment2008

    • Author(s)
      Y. Aoki, T. Fukuba, T. Yamamoto, T. Fujii
    • Organizer
      OCEANS'08 NITS/IEEE KOBE-TECHNO-OCEAN'08
    • Place of Presentation
      Kobe, Japan
    • Year and Date
      20080400
  • [Presentation] Microfluidic in situ Biological and Chemical Sensing2008

    • Author(s)
      T. Fukuba, T. Fujii
    • Organizer
      7^<th> International Symposium for Subsurface Microbiology (ISSM), Proceedings, (182)
    • Place of Presentation
      Shizuoka, Japan
    • Year and Date
      2008-11-20
  • [Presentation] Simple Method for Quantitative PCR Using Flow-Through PCR Device2008

    • Author(s)
      T. Fukuba, M. Hiraga, A. Takamatsu, C. Provin, T. Yamamoto, T. Fujii
    • Organizer
      μTAS 2008, Proceedings, (1743-1745)
    • Place of Presentation
      San Diego, USA
    • Year and Date
      2008-10-16
  • [Presentation] Development of Integrated in situ Analyzers (IISA) for Oceanography Applications2007

    • Author(s)
      T. Fukuba, A. Miyaji, N. Fukuzawa, C. Provin, T. Yamamoto, L. Glutz, T. Okamoto, T. Fujii
    • Organizer
      μTAS 2007, Proceedings, (844-846)
    • Place of Presentation
      Paris, France
    • Year and Date
      2007-10-09
  • [Presentation] 現場型ATP定量装置IISA-ATPの開発とマイクロ流路形状の検討2007

    • Author(s)
      青木優介, 福場辰洋, 山本富貴喜, 藤井輝夫
    • Organizer
      第25回センサ・マイクロマシンと応用システムシンポジウム要旨集, (103)
    • Place of Presentation
      東京
    • Year and Date
      2007-09-15
  • [Presentation] Microfluidic-Based in situ Biological and Chemical Sensing-Towards Integrated and Real-Time Measurements in Deep-sea-2007

    • Author(s)
      T. Fujii, T. Fukuba
    • Organizer
      International Symposium on Underwater Technology 2007, Proceedings, (210)
    • Place of Presentation
      Tokyo, Japan
    • Year and Date
      2007-04-19
  • [Presentation] Development of an Integrated In Situ Analyzer for Quantitative Aalysis of Microbial ATP in Aquatic Environments2007

    • Author(s)
      T. Fukuba, N. Fukuzawa, L. S. Glutz, A. Miyaji, T. Fujii
    • Organizer
      International Symposium on Underwater Technology 2007, Proceedings, (240-244)
    • Place of Presentation
      Tokyo, Japan
    • Year and Date
      2007-04-19
  • [Presentation] Development and Evaluation of the Integrated In Situ Analyzer for Gene-"IISA-Gene" for Microbiology in Extreme Environments2006

    • Author(s)
      T. Fukuba, T. Fujii
    • Organizer
      2006 International Conference on Microtechnologies in Medicine and Biology, Proceedings, (184-187)
    • Place of Presentation
      Okinawa, Japan
    • Year and Date
      20060509-20060512
  • [Presentation] Development of in situ ATP Quantitative Analysis System "IISA-ATP""2006

    • Author(s)
      N. Fukuzawa, T. Fukuba, T. Fujii
    • Organizer
      2006 Inter national Conference on Micro technologies in Medicine and Biology, Proceedings, (260-263)
    • Place of Presentation
      Okinawa, Japan
    • Year and Date
      20060509-20060512
  • [Presentation] Processing and Analyzing Biological Samples in Microchannels2005

    • Author(s)
      T. Fujii
    • Organizer
      3rd International Conference on Micro channels and Minichannels, Proceedings, (75083)
    • Place of Presentation
      ICMM
    • Year and Date
      20050613-20050615
  • [Presentation] Development of miniaturized in situ analysis devices for biological and chemical oceanography2005

    • Author(s)
      T. Fukuba, A. Imhof, M. Matsunaga, N. Takagi, T. Yamamoto, K. Okamura, T. Naganuma, T. Fujii
    • Organizer
      Microtechnology in Medicine and Biology, 2005. 3rd IEEE/EMBS Special Topic Conference, Proceedings, (56-54)
    • Place of Presentation
      Hawaii, USA
    • Year and Date
      20050512-20050515
  • [Presentation] 深海熱水地帯における化学及び生物活動に関する現場複合計測の試み2005

    • Author(s)
      福場辰洋, 岡本拓士, 長沼毅, 金子亮, 林徹, 許正憲, 吉田尊雄, 岡村慶, 下島公紀, 前田義明, 小池祐一, 藤井輝夫
    • Organizer
      2005年度日本地球化学会第52回年会講演会要旨集 (7)
    • Place of Presentation
      沖縄
    • Year and Date
      2005-09-26
  • [Book] マイクロ流体デバイスの深海微生物探査への応用 (松永是、竹山春子監修「バイオテクノロジーシリーズ マリンメタゲノムの有効利用」)2009

    • Author(s)
      福場辰洋, 藤井輝夫
    • Total Pages
      14-27
    • Publisher
      シーエムシー出版
  • [Remarks]

    • URL

      http://www.microfluidics.iis.u-tokyo.ac.jp/index_j.html

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Published: 2011-06-18   Modified: 2016-04-21  

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