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2009 Fiscal Year Final Research Report

Molecular Mechanism of energy transduction of dynein revealed by genetic engineering, structural and enzyme kinetics studies

Research Project

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Project/Area Number 17107003
Research Category

Grant-in-Aid for Scientific Research (S)

Allocation TypeSingle-year Grants
Research Field Biophysics
Research InstitutionThe University of Tokyo

Principal Investigator

SUTOH Kazuo  The University of Tokyo, 大学院・総合文化研究科, 教授 (20111453)

Co-Investigator(Renkei-kenkyūsha) KON Takahide  東京大学, 大学院・総合文化研究科, 助教 (30332620)
Project Period (FY) 2005 – 2009
Keywords細胞質ダイニン / AAA+ファミリー / 微小管 / ATP加水分解酵素 / FRET / 電子顕微鏡 / パワーストローク
Research Abstract

Our major goal of this project is to elucidate the molecular mechanism of energy transduction of cytoplasmic dynein by genetic engineering, structural studies and ATPase kinetics analyses. Our major results are: (1) we have identified the minimal motor domain of cytoplasmic dynein and examined its structure by electron microscopy. (2) Based on ATPase kinetics, we have identified three ATPase sites and one ADP-binding site in the minimal motor domain (380kDa), among which one is the primary ATPase site and the others are regulatory sites. (3) We have identified intermediate steps of the ATPase cycle by means of stopped-flow kinetics. (4) We have discovered that the linker protruding from the core ring swings as a lever-arm at specific steps of the ATPase cycle of the primary ATPase site. (5) We have shown that structural changes of the microtubule-binding domain of dynein are induced at specific ATPase steps of the primary ATPase site. Based on these findings, we have proposed a molecular model of energy transduction of cytoplasmic dynein.

  • Research Products

    (32 results)

All 2009 2008 2007 2006 2005 2004

All Journal Article (13 results) Presentation (19 results)

  • [Journal Article] Biomolecular-Motor-Based Nano-or Microscale Particle Translocations on DNA Microarrays.2009

    • Author(s)
      Satoshi Hiyama,, Riho Gojo, Tomohiro Shima, Shoji Takeuchi, Kazuo Sutoh
    • Journal Title

      Nano Letters.Publication on Web on

  • [Journal Article] AAA+ Ring and Linker Swing Mechanism in the Dynein Motor2009

    • Author(s)
      Anthony J. Roberts, Naoki Numata, Matt L. Walker, Yusuke S. Kato, Bara Malkova, Takahide Kon, Reiko Ohkura, Fumio Arisaka, Peter J. Knight, Kazuo Sutoh, Stan A. Burgess.
    • Journal Title

      Cell 136

      Pages: 485-595

  • [Journal Article] Helix sliding in the stalk coiled coil of dynein couples ATPase and microtubule binding.2009

    • Author(s)
      Takahide Kon, Kenji Imamula, Anthony J Roberts, Reiko Ohkura, Peter J Knight, I R Gibbons, Stan A Burgess, Kazuo Sutoh
    • Journal Title

      Nature Structural and Molecular Biology 16

      Pages: 325-333

  • [Journal Article] Autonomous Loading/Unloading and Transport of Specified Cargoes Using DNA Hybridization and Biological Motor-Based Motility.2008

    • Author(s)
      Hiyama, S., Inoue, T., Shima, T., Moritani, Y., Suda, T., Sutoh, K.
    • Journal Title

      Small 4

      Pages: 410-415

  • [Journal Article] Three-dimensional structure of cytoplasmic dynein bound to microtubules.2007

    • Author(s)
      Naoko Mizuno, Akihiro Narita, Takahide Kon, Kazuo Sutoh, Masahide Kikkawa
    • Journal Title

      PNAS 104

      Pages: 20832-20837

  • [Journal Article] The coordination of cyclic microtubule association/dissociation and tail swing of cytoplasmic dynein.2007

    • Author(s)
      Kenji Imamula, Takahide Kon, Reiko Ohkura, Kazuo Sutoh
    • Journal Title

      PNAS 104

      Pages: 16134

  • [Journal Article] Kinetic characterization of tail swing steps in the ATPase cycle of Dictyostelium cytoplasmic dynein.2007

    • Author(s)
      Toshifumi Mogami, Takahide Kon*, Kohji Ito, Kazuo Sutoh
    • Journal Title

      J.Bio.Chem 282

      Pages: 21639

  • [Journal Article] Two modes of microtubule sliding driven by cytoplasmic dynein.2006

    • Author(s)
      Tomohiro Shima, Takahide Kon, Kenji Imamula, Reiko Ohkura, Kazuo Sutoh
    • Journal Title

      PNAS 103

      Pages: 17736-17740

  • [Journal Article] Functional characterization of the amino-terminal region of myosin 2.2006

    • Author(s)
      Setsuko Fujita-Becker, Georgios Tsiavaliaris, Reiko Ohkura, Takashi Shimada, Dietmar Manstein, Kazuo Sutoh
    • Journal Title

      J.Bio.Chem. 281

      Pages: 36102-36109

  • [Journal Article] Head-head coordination is required for the processive motion of cytoplasmic dynein, an AAA+ molecular motor.2006

    • Author(s)
      Tomohiro Shima, Kenji Imamula, Takahide Kon, Reiko Ohkura, Kazuo Sutoh
    • Journal Title

      J.Struc.Biol. 156

      Pages: 182-189

  • [Journal Article] ATP-hydrolysis cycle-dependent stem motions in cytoplasmic dynein.2005

    • Author(s)
      Takahide Kon, Toshifumi Mogami, Reiko Ohkura, Masaya Nishiura, Kazuo Sutoh
    • Journal Title

      Nature Structural and Molecular Biology 12

      Pages: 513-519

  • [Journal Article] Distinct functions of nucleotide-binding/hydrolysis sites in the four AAA modules of cytoplasmic dynein, as revealed by biochemical characterizations of recombinant fragments.2004

    • Author(s)
      Takahide Kon, Masaya Nishiura, Reiko Ohkura, Yoko Y. Toyoshima, Kazuo Sutoh
    • Journal Title

      Biochemistry 43

      Pages: 11266-11274

  • [Journal Article] A single-headed recombinant fragment of Dictyostelium cytoplasmic dynein can drive the robust sliding of microtubules.2004

    • Author(s)
      Nishiura, M., Kon, T., Shiroguchi, K., Ohkura, R., Shima, T., Toyoshima, Y. Y., Sutoh, K.
    • Journal Title

      J.Biol.Chem. 279

      Pages: 22799-22802

  • [Presentation] Dynein-The old but still mysterious motor protein2009

    • Author(s)
      Sutoh K.
    • Organizer
      The Biophysical Society subgroup meeting
    • Year and Date
      20090000
  • [Presentation] Elucidation of structural states of dimeric motor domain of dynein using Cys-light construct2009

    • Author(s)
      Hasegawa Y., Shima T., Kon T., Sutoh K., Sutoh K.
    • Organizer
      The Biophysical Society annual meeting
    • Place of Presentation
      USA
    • Year and Date
      20090000
  • [Presentation] How does the two-headed dynein processively walk on a microtubule?2009

    • Author(s)
      Shima T., Numata N., Kon T., Ohkura R., Higuchi H., Sutoh K.
    • Organizer
      The Biophysical Society annual meeting
    • Place of Presentation
      USA
    • Year and Date
      20090000
  • [Presentation] Communication of multiple ATPase sites of the dynein motor domain.2008

    • Author(s)
      Sutoh K.
    • Organizer
      Gordon Conference on Muscle and Molecular Motors
    • Year and Date
      20080000
  • [Presentation] Dissection of Inter-modular Communication among Multiple Nucleotide-binding/hydrolysis Sites of Cytoplasmic Dynein.2008

    • Author(s)
      Mogami T., Imamula K., Ohkura R., Sutoh K., Kon T.
    • Organizer
      The American Society of Cell Biology annual meeting
    • Year and Date
      20080000
  • [Presentation] Biochemical Dissection of Motor Functions of Cytoplasmic Dynein.2007

    • Author(s)
      Sutoh K.
    • Organizer
      The Biophysical Society annual meeting
    • Year and Date
      20070000
  • [Presentation] Force generation by cytoplasmic dynein, a microtubule-based motor protein that belongs to the AAA+ family.2007

    • Author(s)
      Sutoh K.
    • Organizer
      The 6^<th> International Conference on AAA proteins
    • Year and Date
      20070000
  • [Presentation] Kinetic analysis of dynein-MT interaction.2007

    • Author(s)
      Imamula K, Kon T, Ohkura R, Sutoh, K.
    • Organizer
      Biophysical Society annual meeting
    • Place of Presentation
      USA
    • Year and Date
      20070000
  • [Presentation] Two modes of microtubule-sliding driven by cytoplasmic dynein.2007

    • Author(s)
      Shima T, Kon T, Imamula K, Ohkura R., Sutoh K.
    • Organizer
      The Biophysical Society annual meeting
    • Place of Presentation
      USA
    • Year and Date
      20070000
  • [Presentation] Are six AAA modules sufficient to form the AAA ring of dynein?2007

    • Author(s)
      Numata N, Roberts A, Burgess SA, Kon, T., Ohkura, R., Knight, P. Sutoh, K.
    • Organizer
      The Biophysical Society annual meeting
    • Place of Presentation
      USA
    • Year and Date
      20070000
  • [Presentation] Structure and Function of Dynein, A Huge Microtubule-based AAA+ Motor.2006

    • Author(s)
      Sutoh K.
    • Organizer
      The Biophysical Society annual meeting
    • Year and Date
      20060000
  • [Presentation] Dissection of Intra-molecular Communications between the Catalytic Head and Microtubule-binding Site in the Dynein Heavy Chain.2006

    • Author(s)
      Kon T., Imamura K., Okura R., Sutoh K.
    • Organizer
      The American Society of Cell Biology annual meeting
    • Year and Date
      20060000
  • [Presentation] Roles of multiple nucleotide-binding/hydrolysis sites of the cytoplasmic dynein motor domain in microtubule sliding2006

    • Author(s)
      Sutoh K., Mogami T., Imamula K., Ohkura R., Kon T.
    • Organizer
      The Biophysical Society Discussion Meeting
    • Place of Presentation
      USA
    • Year and Date
      20060000
  • [Presentation] Dissection of Intra-molecular Communications between the Catalytic Head and Microtubule-binding Site in the Dynein Heavy Chain.2006

    • Author(s)
      Kon T., Imamura K., Okura R., Sutoh K.
    • Organizer
      The Biophysical Society Discussion Meeting
    • Place of Presentation
      USA
    • Year and Date
      20060000
  • [Presentation] Molecular mechanism of force generation by cytoplasmic dynein as revealed by fully active recombinant motor domain.2005

    • Author(s)
      Sutoh K.
    • Organizer
      Gordon Conference on Muscle and Molecular Motors
    • Year and Date
      20050000
  • [Presentation] Active participation of the stalk coiled-coil in communication between ATPase and MT-binding sites of cytoplasmic dynein2005

    • Author(s)
      Okura R, Kon T, Shima T., Sutoh K.
    • Organizer
      The Biophysical Society annual meeting
    • Place of Presentation
      USA
    • Year and Date
      20050000
  • [Presentation] ATP-hydrolysis cycle dependent stem motions in cytoplasmic dynein.2005

    • Author(s)
      Kon T, Mogami T, Ohkura R, Sutoh K.
    • Organizer
      Biophysical Society annual meeting
    • Place of Presentation
      USA
    • Year and Date
      20050000
  • [Presentation] Kinetic analysis of FRET changes of recombinant dynein motor domain.2005

    • Author(s)
      Mogami T, Kon T, Ohkura R, Sutoh K.
    • Organizer
      The Biophysical Society annual meeting
    • Place of Presentation
      USA
    • Year and Date
      20050000
  • [Presentation] Distinct roles of the four nucleotide-binding/hydrolysis sites in the motor activities of cytoplasmic dynein.2004

    • Author(s)
      Kon T, Mogami T, Nishiura M, Sutoh K.
    • Organizer
      The American Society of Cell Biology annual meeting
    • Year and Date
      20040000

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Published: 2011-06-18   Modified: 2016-04-21  

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