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2007 Fiscal Year Final Research Report Summary

Microbial and geochemical mechanisms controlling dissolution processes of particulate organic matter in the oceans

Research Project

Project/Area Number 17201004
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Environmental dynamic analysis
Research InstitutionKyoto University

Principal Investigator

NAGATA Toshi  Kyoto University, Center for Ecological Research, Professor (40183892)

Co-Investigator(Kenkyū-buntansha) YAMAMURA Norie  Research Institute for Humanity and Nature, 研究部, Research, Professor (70124815)
OGAWA Hiroshi  The University of Tokyo, Ocean Research Institute, Associate Professor (50260518)
HAMASAKI Koji  The University of Tokyo, Ocean Research Institute, Associate Professor (80277871)
KOIKE Isao  University of the Ryukyus, Inspector General (30107453)
Project Period (FY) 2005 – 2007
KeywordsOcean / Particulate organic matter / Dissolved organic matter / Microbial loop / Material cycling / Bacterial community structure / Extracellular enzyme / Organic matter decomposition
Research Abstract

Microbes play the major role in the regulation of material cycling in the oceans, but the mechanisms by which material fluxes mediated by bacteria are controlled have yet to be clarified fully. Especially our knowledge is limited regarding large scale patterns and controls of organic matter - bacteria interactions in oceanic water columns. In order to better understand dynamic features of the oceanic biogeochemical cycles at a large scale, this study examined patters in distributions of microbes and organic matter transformations and decomposition in the surface and deep water columns of the South and North Pacific. Our data revealed that bacterial production is largely coupled with the flux of sinking particulate organic carbon in the mesopelagic zone (100 - 1,000 m), supporting the hypothesis that particulate organic carbon -> dissolved organic carbon -> free-living prokaryote pathway is important in the regulation of the biological pump. However the coupling between the sinking fluxes of particulate organic carbon and prokaryotic activity was weak in the bathypelagic layer (>1,000 m), suggesting that the lateral transport or resuspension of organic matter from the sediment is important in that layer. We also investigated the dynamics of bacterial communities and microbial activities during the algal blooms. On the basis of the results obtained by mesocosm experiments, we concluded that filamentous bacteria affiliated with the Cytophaga-Flavobacter cluster play an important role in particulate organic matter decomposition during the bloom. Finally, we constructed a new mathematical model to examine dynamic behavior of bacterial communities during the decomposition of particulate and dissolved organic matter in the oceans. The above studies collectively revealed novel features in the organic matter- microbe interactions in the oceans.

  • Research Products

    (53 results)

All 2008 2007 2006 2005 Other

All Journal Article (13 results) (of which Peer Reviewed: 5 results) Presentation (37 results) Book (3 results)

  • [Journal Article] Functional consequences of viral impacts on bacterial communities: a food-web model analysis2008

    • Author(s)
      Miki T, Nakazawa T, Yokokawa T, and Nagata T
    • Journal Title

      Freshwater Biology 53

      Pages: 1142-1153

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Functional consequences of viral impacts on bacterial communities : a food-web model analysis2008

    • Author(s)
      Mild, T., Nakazawa, T., Yokokawa, T., Nagata, T
    • Journal Title

      Freshwater Biology 53(6)

      Pages: 1142-1153

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Size distribution and biomass of nanoflagellates in meso-and bathypelagic layers of the subarctic Pacific2007

    • Author(s)
      Hideki Fukuda, Rumi Sohrin, Toshi Nagata, Isao Koike
    • Journal Title

      Aquatic Microbial Ecology 46

      Pages: 203-207

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Tungstate compounds as an alternative to uranyl acetate for enumerating viral-infected prokaryote cells in aquatic systems.2007

    • Author(s)
      A. S. Pradeep Ram, T. Nagata, Y. Tomaru, K. Nagasaki
    • Journal Title

      Aquatic Microbial Ecology 47

      Pages: 209-212

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Enhancement of viral production by addition of nitrogen or nitrogen plus carbon in subtropical surface waters of the South Pacific2007

    • Author(s)
      Motegi, C. and Nagata, T.
    • Journal Title

      Aquatic Microbial Ecology 48

      Pages: 27-34

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Size distribution and biomass of nanoflagellates in meso- and bathypelagic layers of the subarctic Pacific2007

    • Author(s)
      Fukuda, H., Sohrin, R., Nagata, T., Koike, I
    • Journal Title

      Aquatic Microbial Ecology 46

      Pages: 203-207

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Tungstate compounds as an alternative to uranyl acetate for enumerating viral infected prokaryote cells in aquatic systems2007

    • Author(s)
      Ram, A.S.P., Nagata, T., Tomaru, Y., Nagasaki, K
    • Journal Title

      Aquatic Microbial Ecology 47

      Pages: 209-212

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Enhancement of viral production by addition of nitrogen or nitrogen plus carbon in subtropical surface waters of the South Pacific2007

    • Author(s)
      Motegi, C., Nagata, T
    • Journal Title

      Aquatic Microbial Ecology 48

      Pages: 27-34

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] What is diversity2007

    • Author(s)
      Nagata, T., Motegi, C
    • Journal Title

      Kyoto University Press

      Pages: 273-295

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Interaction among Marine Organisms : What kind of relationships are there2006

    • Author(s)
      Nagata, T
    • Journal Title

      Tokai University Press

      Pages: 84-102

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Growth and grazing mortality rates of phylogenetic groups of bacterioplankton in coastal marine environments2005

    • Author(s)
      Yokokawa, T and Nagata, T
    • Journal Title

      Applied and Environmental Microbiology 71

      Pages: 6799-6807

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Growth and grazing mortality rates of phylogenetic groups of bacterioplankton in coastal marine environments2005

    • Author(s)
      Yokokawa, T., Nagata, T
    • Journal Title

      Applied and Environmental Microbiology 71

      Pages: 6799-6807

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Microbial Ecology of the Oceans (2nd edition)

    • Author(s)
      Nagata, T
    • Journal Title

      John Wiley & Sons (in press)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] 南太平洋の亜熱帯貧栄養海域におけるウィルス生産の制限要因2007

    • Author(s)
      茂手木千晶, 永田俊
    • Organizer
      2007年度日本海洋学会春季大会
    • Place of Presentation
      東京海洋大学
    • Year and Date
      20070322-26
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Limiting factors of viral production in subtropical, oligotrophic waters of the South Pacific2007

    • Author(s)
      Motegi, C., Nagata, T
    • Organizer
      2007 Spring Meeting of the Oceanographic Society of Japan
    • Place of Presentation
      Tokyo Univeristy of Marine Science and Technology
    • Year and Date
      20070322-26
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] 超大規模スケールでの細菌の現存量と生産速度の空間分布:南極海からアラスカ沖まで2007

    • Author(s)
      横川太一, 楊燕輝, 永田俊, 茂手木千晶
    • Organizer
      第54回日本生態学会
    • Place of Presentation
      愛媛大学
    • Year and Date
      20070319-23
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] 環境変動に対する群集レベルの適応的応答を支える細菌の移動分散とその炭素循環への影響:海洋細菌のメタ群集モデル2007

    • Author(s)
      三木健, 横川太一, 永田俊, 山村則男
    • Organizer
      第54回日本生態学会
    • Place of Presentation
      愛媛大学
    • Year and Date
      20070319-23
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Large scale distribution patterns in bacterial abundance and production : from the Southern Ocean to the subarctic Pacific2007

    • Author(s)
      Yokokoawa, T., Yang, Y., Nagata, T., Motegi, C
    • Organizer
      54th Annual Meeting of Ecological Society of Japan
    • Place of Presentation
      Ehime University
    • Year and Date
      20070319-23
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Effect of immigration on community-level flexibility of bacteria under environmental changes and its consequences in carbon fluxes in the oceans : a metacommunity model2007

    • Author(s)
      Takeshi, Mild, Taichi, Yokokawa, Toshi, Nagata, Norio, Yamamura
    • Organizer
      54th Annual Meeting of Ecological Society of Japan
    • Place of Presentation
      Ehime University
    • Year and Date
      20070319-23
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Distribution patterns of viruses and their subclusters in the upper water columns of the Pacific and Southern Oceans.2007

    • Author(s)
      Yang, Y., Yokokawa, T., Motegi, C. and Nagata, T.
    • Organizer
      2007年度日本海洋学会秋季大会
    • Place of Presentation
      琉球大学
    • Year and Date
      2007-09-28
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] 異なる溶存有機物の添加に対する細菌とウィルスの応答特性 -沿岸海水を用いたモデル実験による解析-2007

    • Author(s)
      茂手木千晶, 永田俊
    • Organizer
      2007年度日本海洋学会秋季大会
    • Place of Presentation
      琉球大学
    • Year and Date
      2007-09-28
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Distribution patterns of viruses and their subclusters in the upper water columns of the Pacific and Southern Oceans2007

    • Author(s)
      Yang, Y., Yokokawa, T., Motegi, C., Nagata, T
    • Organizer
      2007 Fall Meeting of the Oceanographic Society of Japan
    • Place of Presentation
      University of the Ryukyus
    • Year and Date
      2007-09-28
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Responses of bacteria and viruses to the addition of different organic compounds - A model experiment using coastal seawaters2007

    • Author(s)
      Motegi, C., Nagata, T
    • Organizer
      2007 Fall Meeting of the Oceanographic Society of Japan
    • Place of Presentation
      University of the Ryukyus
    • Year and Date
      2007-09-28
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Prokaryotic metacommunity concept: linking microbial diversity to biogeochemical cycling in the ocean2007

    • Author(s)
      Miki T., Yokokawa T., Nagata T., Yamamura N.
    • Organizer
      アメリカ生態学会
    • Place of Presentation
      San Jose, California, USA
    • Year and Date
      2007-08-08
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Prokaryotic metacommunity concept : linking microbial diversity to biogeochemical cycling in the ocean2007

    • Author(s)
      Mild, T., Yokokawa, T., Nagata, T., Yamamura, N
    • Organizer
      ESA/SER Joint Meeting
    • Place of Presentation
      San Jose, CA, USA
    • Year and Date
      2007-08-08
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Coexistence and succession in microbial metacommunity: potential linking between spatial heterogeneity in diversity and rapid shifts in community in response to environmental changes.2007

    • Author(s)
      Miki T., Yokokawa T., Nagata T., Yamamura N.
    • Organizer
      The Joint Annual Meetings of the Society for Mathematical Biology and the Japanese Society for Mathematical Biology
    • Place of Presentation
      San Jose, California, USA
    • Year and Date
      2007-08-02
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Coexistence and succession in microbial metacommunity : potential linking between spatial heterogeneity in iversity and rapid shifts in community in response to environmental changes2007

    • Author(s)
      Miki, T., Yokokawa, T., Nagata, T., Yamamura, N
    • Organizer
      The Joint Annual Meetings of the Society for Mathematical Biology and the Japanese Society for Mathematical Biology
    • Place of Presentation
      San Jose, California, USA
    • Year and Date
      2007-08-02
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Full depth distributions of viruses along a meridional transect across the central Pacific2006

    • Author(s)
      Yang, Y., Yokokawa, T., Motegi, C. and Nagata, T.
    • Organizer
      2006年度日本海洋学会秋季大会
    • Place of Presentation
      名古屋
    • Year and Date
      2006-09-28
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] 中部太平洋における細菌数と生産速度の水平鉛直分布:南緯67.5度-北緯53.6度間の南北断面観測結果2006

    • Author(s)
      横川太一, 楊燕輝, 茂手木千晶, 永田俊
    • Organizer
      2006年度日本海洋学会秋季大会
    • Place of Presentation
      名古屋
    • Year and Date
      2006-09-28
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Full depth distributions of viruses along a meridional transect across the central Pacific2006

    • Author(s)
      Yang, Y., Yokokawa, T., Motegi, C., Nagata, T
    • Organizer
      2006 Fall Meeting of the Oceanographic Society of Japan
    • Place of Presentation
      Nagoya
    • Year and Date
      2006-09-28
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Vertical and horizontal distribution patterns in bacterial abundance and production in the central Pacific : Meridional observations between 67.5 oS and 53.6 oN2006

    • Author(s)
      Yokokawa, T., Yang, Y., Motegi, C., Nagata, T
    • Organizer
      2006 Fall Meeting of the Oceanographic Society of Japan
    • Place of Presentation
      Nagoya
    • Year and Date
      2006-09-28
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] 細菌-ウィルス系の支配要因としてのリンの役割 -地中海沿岸水を用いた検証-2006

    • Author(s)
      茂手木千晶, MG. Weinbauer, L. Legendre, F. Rassoulzadegan, 永田俊
    • Organizer
      2006年度日本海洋学会秋季大会
    • Place of Presentation
      名古屋
    • Year and Date
      2006-09-26
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Effect of phosphorus addition in controlling the dynamics of bacteria-virus system : Evidence from the seawater culture experiments using Meditteranean coastal waters2006

    • Author(s)
      Motegi, C., Weinbauer, MG, Legendre, L., Rassoulzadegan, F., Nagata, T
    • Organizer
      2006 Fall Meeting of the Oceanographic Society of Japan
    • Place of Presentation
      Nagoya
    • Year and Date
      2006-09-26
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Large-scale latitudinal variation of heterotrophic prokaryotic production throughout the water column of the central pacific.2006

    • Author(s)
      Yokokawa, T., Yang, Y. and Nagata, T.
    • Organizer
      11th International Symposium on Microbial Ecology
    • Place of Presentation
      Vienna, Austria
    • Year and Date
      2006-08-24
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Grow or respire possible factors that affect the growth efficiency of bacteria in a large lake2006

    • Author(s)
      A. S. Pradeep Ram, Nishimura, Y. and Nagata, T.
    • Organizer
      11th International Symposium on Microbial Ecology
    • Place of Presentation
      Vienna, Austria
    • Year and Date
      2006-08-24
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Large scale patterns in full-depgh distribution of virioplankton in the pacific ocean: coupling and uncoupling with heterotrophic prokaryotic production.2006

    • Author(s)
      Yang, Y., Yokokawa, T. and Nagata, T.
    • Organizer
      11th International Symposium on Microbial Ecology
    • Place of Presentation
      Vienna, Austria
    • Year and Date
      2006-08-24
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Large-scale latitudinal variation of heterotrophic prokaryotic production throughout the water column of the central pacific2006

    • Author(s)
      Yokokawa, T., Yang, Y., Nagata, T
    • Organizer
      11th International Symposium on Microbial Ecology
    • Place of Presentation
      Vienna, Austria
    • Year and Date
      2006-08-24
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Large scale patterns in full-depgh distribution of virioplankton in the pacific ocean : coupling and uncoupling with heterotrophic prokaryotic production2006

    • Author(s)
      Yang, Y., Yokokawa, T., Nagata, T
    • Organizer
      11th International Symposium on Microbial Ecology
    • Place of Presentation
      Vienna, Austria
    • Year and Date
      2006-08-24
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Microbial transformation and mineralization of organic matter: Large scale patterns in the oceans2006

    • Author(s)
      Nagata, T.
    • Organizer
      11th International Symposium on Microbial Ecology
    • Place of Presentation
      Vienna, Austria
    • Year and Date
      2006-08-22
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Viral enhancement of bacterial respiration under P-limited conditons: evidence from NW Mediterranean Sea2006

    • Author(s)
      Motegi, C., MG. Weinbauer, L. Legendre, Nagata, T. and F. Rassoul zadegan
    • Organizer
      11th International Symposium on Microbial Ecology
    • Place of Presentation
      Vienna, Austria
    • Year and Date
      2006-08-22
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Microbial transformation and mineralization of organic matter : Large scale patterns in the oceans2006

    • Author(s)
      Nagata, T
    • Organizer
      11th International Symposium on Microbial Ecology
    • Place of Presentation
      Vienna, Austria
    • Year and Date
      2006-08-22
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Viral enhancement of bacterial respiration under P-limited conditons : evidence from NW Mediterranean Sea2006

    • Author(s)
      Motegi, C., MG., Weinbauer, L., Legendre, Nagata, T., F., Rassoulzadegan
    • Organizer
      11th International Symposium on Microbial Ecology
    • Place of Presentation
      Vienna, Austria
    • Year and Date
      2006-08-22
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Latitudinal variation in full depth distributions of bacteial production in the central Pacific from 67.5S to 53N: Implications for global biogeochemical models2006

    • Author(s)
      Yokokawa, T. and Nagata, T.
    • Organizer
      2006 Ocean Sciences Meeting
    • Place of Presentation
      Honolulu, Hawaii
    • Year and Date
      2006-02-22
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Latitudinal variation in full depth distributions of bacteial production in the central Pacific from 67.5S to 53N : Implications for global biogeochemical models2006

    • Author(s)
      Yokokawa, T., Nagata, T
    • Organizer
      2006 Ocean Sciences Meeting
    • Place of Presentation
      Honolulu, Hawaii
    • Year and Date
      2006-02-22
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Meridional transect of full depth distributions of bactetrial production in the Southern Ocean and the central South Pacific: Patterns, anomalies and their implications for oceanoc carbon cycling2005

    • Author(s)
      Nagata, T. and Yokokawa, T.
    • Organizer
      DOBIS International Symposium-Dynamics of the Ocean Biosystem
    • Place of Presentation
      東京
    • Year and Date
      20051116-17
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Meridional transect of full depth distributions of bactetrial production in the Southern Ocean and the central South Pacific : Patterns, anomalies and their implications for oceanoc carbon cycling2005

    • Author(s)
      Nagata, T., Yokokawa, T
    • Organizer
      DOBIS International Symposium-Dynamics of the Ocean Biosystem
    • Place of Presentation
      Tokyo
    • Year and Date
      20051116-17
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] 中部太平洋赤道域における細胞外加水分解酵素活性の鉛直分布2005

    • Author(s)
      永田俊, 茂手木千晶, Kim Chulgoo, 横川太一
    • Organizer
      2005年度日本海洋学会秋季大会
    • Place of Presentation
      仙台
    • Year and Date
      2005-09-28
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] 中部南太平洋における細菌生産(ロイシン取り込み速度)の南北断面観測2005

    • Author(s)
      横川太一, 永田俊
    • Organizer
      2005年度日本海洋学会秋季大会
    • Place of Presentation
      仙台
    • Year and Date
      2005-09-28
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Vertical distribution of extracellular hydrolytic enzyme activities in the equatorial, Central Pacific2005

    • Author(s)
      Nagata, T., Motegi, C., Kim, C., Yokokawa, T
    • Organizer
      2005 Fall Meeting of the Oceanographic Society of Japan
    • Place of Presentation
      Sendai
    • Year and Date
      2005-09-28
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Meridional transect observation of bacterial production (leucine incorporation) in the equatorial, Central Pacific2005

    • Author(s)
      Yokokawa, T., Nagata, T
    • Organizer
      2005 Fall Meeting of the Oceanographic Society of Japan
    • Place of Presentation
      Sendai
    • Year and Date
      2005-09-28
    • Description
      「研究成果報告書概要(欧文)」より
  • [Book] 生物の多様性って何だろう2007

    • Author(s)
      永田 俊, 茂手木千晶(京都大学総合博物館・京都大学生態学研究センター編)
    • Total Pages
      313
    • Publisher
      京都大学学術出版会
    • Description
      「研究成果報告書概要(和文)」より
  • [Book] 海洋生物の連鎖・生命は海でどう連環しているか-2006

    • Author(s)
      永田 俊(木暮一啓編)
    • Total Pages
      340
    • Publisher
      東海大学出版会
    • Description
      「研究成果報告書概要(和文)」より
  • [Book] Microbial Ecology of the Oceans(2nd edition)

    • Author(s)
      Nagata, T.(ed. by Kirchman, D. L.)
    • Publisher
      John Wiley & Sons(In press)
    • Description
      「研究成果報告書概要(和文)」より

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Published: 2010-02-04  

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