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2007 Fiscal Year Final Research Report Summary

Analysis of 2000-yr eruption-affected soil microbial ecosystem of Miyake-jima Island

Research Project

Project/Area Number 17310018
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Environmental impact assessment/Environmental policy
Research InstitutionIbaraki University

Principal Investigator

OHTA Hiroyuki  Ibaraki University, College of Agriculture, Professor (80168947)

Co-Investigator(Kenkyū-buntansha) KUBOTA Masatsugu  Ibaraki University, College of Agriculture, Professor (40007688)
KASAHARA Yasuhiro  Hokkaido University, Inst. of Low Temp. Sci., Assoc. Professor (20273849)
HIGASHI Teruo  University of Tsukuba, Grad. School of Life Environ. sci., Professor (20094170)
KAMIJYO Takashi  University of Tsukuba, Grad. School of Life Environ. sci., Lecturer (10301079)
NANBA Kenji  Fukushima University, Faculty of Symbiotic Systematic Sci., Assoc. Professor (70242162)
Project Period (FY) 2005 – 2007
KeywordsVolcanic ash layer / Iron oxidizers / CO_2 fixation / N_2 fixation / Scoria / Autotrophs / Lithotrophs
Research Abstract

Miyake-jima Island is situated on western rim of the Pacific Ocean, about 180 km south of Tokyo. Mt. Oyama in the island erupted from July to September 2000, ejecting large amounts of volcanic ash and finally forming a large collapsed crater. Since the formation of the new crater, a large quantity of volcanic gas containing high concentrations of SO_2 and H_2S has been emitted. This study was aimed to characterize such volcano-affected soil ecosystems by culture-based and molecular genetic methods. We focused on the lithotrophic and heterotrophic bacterial communities in the 2000 volcanic ash deposits from an essentially unvegetated site near the crater. The pH of samples ranged from 3.0 to 3.6 and the contents of carbon and nitrogen were 0.03% and 0.01%, respectively. Total microscopic counts of bacteria were between 10^7 and 10^9/g and plate counts of heterotrophic bacteria were 10^6/g. Phylogenetic analysis of isolates and 16S rDNA clone library analysis revealed that the predominant bacteria were Thiomonas (41% of isolates and 5% of clones), Leptospirillum (39% of clones) and Acidithiobacillus (15% of clones). Further, the intact volcanic ash samples had activites of CO_2 and N_2 fixation and the clone library analyses targeting RubisCo and nitrogenase reductase genes revealed the predominance of the genes of Leptospirillum and Acidithiobacillus. The volcanic ash sample was subjected to stable isotope probing by using ^<15>N_2 to demonstrate the occurrence of N_2 fixation by these bacteria. Our results suggested that chemolithoautotrophic bacteria such as Fe oxidizers could be the pioneer organisms in the microbial ecosystem of the fresh volcanic ash deposit and contribute to the accumulation of carbon and nitrogen in the fresh volcanic deposits.

  • Research Products

    (34 results)

All 2008 2007 2006 2005

All Journal Article (4 results) (of which Peer Reviewed: 2 results) Presentation (30 results)

  • [Journal Article] Characterization of Herbaspirillum- and Limnobacter-Related Strains Isolated from Young Volcanic Deposits in Miyake-jima Island, Japan2008

    • Author(s)
      HONGSHENG, LU・REIKO, FUJIMURA・YOSHINORI, SATO・KENJI, NANBA・TAKASHI, KAMIJO・HIROYUKI, OHTA
    • Journal Title

      Microbes and Environments 23

      Pages: 66-72

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Lithotrophic activity of bacteria isolated from the volcanic deposit from the 2000-y eruption in Miyake-jima Island2008

    • Author(s)
      HONGSHENG Lu, REIKO FUJIMURA, YOSHINORI SATO, KENJI NANBA, TAKASHI KAMIJO and HIROYUKI OHTA
    • Journal Title

      Microbes and Environments vol.23

      Pages: 66-72

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] 初成土壌生成と微生物群集:火山噴火堆積物中における物質代謝と微生物2005

    • Author(s)
      太田寛行・佐藤嘉則
    • Journal Title

      ペドロジスト 49

      Pages: 109-118

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Sulfur-oxidizing bacteria in the volcanic deposit from the 2000-y eruption in Miyake-jima Island2005

    • Author(s)
      HIROYUKI OHTA and YOSHINORI SATO
    • Journal Title

      Pedologist vol.49

      Pages: 109-118

    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Contribution of iron-oxidizing bacteria to carbon and nitrogen accumulation in recent volcanic ash deposits of Miyake-jima Island,Japan2007

    • Author(s)
      Fujimura, R.・Y., Sato・K., Nanba・T., Kamijyo・H., Kato・Y., Katayama・H., Ohta
    • Organizer
      18th International Symposium on Environmental Biogeochemistry
    • Place of Presentation
      The Great Lake Center,Taupo,NewZealand
    • Year and Date
      2007-11-12
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Contribution of iron-oxidizing bacteria to carbon and nitrogen accumulation in recent volcanic ash deposits of Miyake-jima Island, Japan2007

    • Author(s)
      Reiko Fujimura, Yoshinori Sato, Kenji Nanba, Takashi Kamijyo, Hiromi Kato, Yoko Katayama, and Hiroyuki Ohta
    • Organizer
      18th International Symposium on Environmental Biogeochemistry "Environmental Biogeochemistry at the Extremes"
    • Place of Presentation
      The Great Lake Center, Taupo, New Zealand
    • Year and Date
      2007-11-12
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] 土壌微生物多様性の環境ゲノミックス解析に向けて2007

    • Author(s)
      妹尾啓史・太田寛行
    • Organizer
      日本微生物生態学会第23回大会
    • Place of Presentation
      愛媛大学
    • Year and Date
      2007-09-18
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Towards environmental genomics of complex soil microbial world2007

    • Author(s)
      Keishi Senoo and Hiroyuki Ohta
    • Organizer
      23rd Annual Convention of the Japanese Society of Microbial Ecology
    • Place of Presentation
      Ehime University
    • Year and Date
      2007-09-18
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Isolation and culture-based and culture-independent analysis of iron-oxidizing bacteria in the Miyake-jima Island deposits2007

    • Author(s)
      Hosokawa, K.・T., Nagasawa・R., Fujimura・Y., Sato・H., Ohta
    • Organizer
      日本微生物生態学会第23回大会
    • Place of Presentation
      愛媛大学
    • Year and Date
      2007-09-17
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Trace gas(CO and methane)utilization and tracegas oxidizing bacteria on successional transects of two recent volcanic deposits2007

    • Author(s)
      King, G.M., C.F. Weber, K. Nanba, H. Ohta
    • Organizer
      日本微生物生態学会第23回大会
    • Place of Presentation
      愛媛大学
    • Year and Date
      2007-09-17
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Characterization of Limnobacter,Herbaspirillum and Paracoccus strains isolated from volcanic deposits in Miyake-jima Island2007

    • Author(s)
      Lu, H.・R., Fujimura・Y., Sato・T., Kamijyo・H., Ohta
    • Organizer
      日本微生物生態学会第23回大会
    • Place of Presentation
      愛媛大学
    • Year and Date
      2007-09-17
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Isolation and culture-based and culture-independent analysis of iron-oxidizing bacteria in the Miyake-jima Island deposits2007

    • Author(s)
      Ken Hosokawa, Toshiki Nagasawa, Reiko Fujimura, Yoshinori Sato, and H iroyuki Ohta
    • Organizer
      23rd Annual Convention of the Japanese Society of Microbial Ecology
    • Place of Presentation
      Ehime University
    • Year and Date
      2007-09-17
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Trace gas (CO and methane) utilization and trace gas oxidizing bacteria on successional transects of two recent volcanic deposits2007

    • Author(s)
      Gary M. King, Caroline F. Weber, Kenji Nanba, and Hiroyuki Ohta
    • Organizer
      23rd Annual Convention of the Japanese Society of Microbial Ecology
    • Place of Presentation
      Ehime University
    • Year and Date
      2007-09-17
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Characterization of Limnobacter, Herbaspirillum and Paracoccus strains isolated from volcanic deposits in Miyake-jima Island2007

    • Author(s)
      Hongsheng Lu, Reiko Fujimura, Yoshinori Sato, Takashi Kamijyo, and Hiroyuki Ohta
    • Organizer
      23rd Annual Convention of the Japanese Society of Microbial Ecology
    • Place of Presentation
      Ehime University
    • Year and Date
      2007-09-17
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] 三宅島2000年噴火堆積物中の微生物活性と機能遺伝子の解析2007

    • Author(s)
      佐藤嘉則・藤村玲子・難波謙二・加藤 拓・上條隆志・東 照雄・太田寛行
    • Organizer
      日本土壌肥料学会2007年度東京大会
    • Place of Presentation
      東京農業大学
    • Year and Date
      2007-08-24
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Analyses of microbial activity and ecologically important functional genes in the 2000-y volcanic deposit of the Miyake-jima2007

    • Author(s)
      Yoshinori Sato, Reiko Fujimura, Teruo Higashi, and Hiroyuki Ohta
    • Organizer
      The Annual Meeting, Japanese Society of Soil Science and Plant Nutrition(2007)
    • Place of Presentation
      Tokyo Agricultural University
    • Year and Date
      2007-08-24
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Characterization of Herbaspirillum spp. Isolated from recent volcanic deposits of Miyake-jima Island2007

    • Author(s)
      Lu, H.・Y., Sato・R., Fujimura・H., Ohta
    • Organizer
      日本土壌微生物学会2007年度大会
    • Place of Presentation
      東葛プラザ
    • Year and Date
      2007-06-08
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Characterization of Herbaspirillum spp. isolated from recent volcanic deposits of Miyake-jima Island2007

    • Author(s)
      Hongsheng Lu, Reiko Fujimura, Yoshinori Sato, and Hiroyuki Ohta
    • Organizer
      The Annual Meeting, Japanese Society of Soil Microbiology(2007)
    • Place of Presentation
      Toukatsu Plaza, Kashiwa, Chiba
    • Year and Date
      2007-06-08
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Microbial ecology of the Miyake-jima volcanic deposit:lithotrophic microbes and the development of early micro-ecosystem2006

    • Author(s)
      H., Ohta・R., Fujimura・Y., " Sato
    • Organizer
      The Fourth Okazaki Biology Conference:''Terra Microbiology 2
    • Place of Presentation
      岡崎会議センター
    • Year and Date
      20060910-15
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Microbial ecology of the Miyake-jima volcanic deposit : lithotrophic microbes and the development of early micro-ecosystem2006

    • Author(s)
      Hiroyuki Ohta, Reiko Fujimura, and Yoshinori Sato
    • Organizer
      The Fourth Okazaki Biology Conference : "Terra Microbiology 2"
    • Place of Presentation
      The Okazaki Conference Center
    • Year and Date
      20060910-15
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Lithotrophic bacterial community in the 2000-y volcanic ash deposit of the Miyake-jima(Japan)2006

    • Author(s)
      Y., Sato・R., Fujimura・K., Nanba・T., Kato・T., Higashi・T., Kamijyo・Y., Katayama・H., Ohta
    • Organizer
      11th International Symposium on Microbial Ecology
    • Place of Presentation
      Austria Center,Vienna,Austria
    • Year and Date
      20060820-25
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Microbial ecosystem development in the Miyake-jima(Japan)volcanic deposits ranging from 5 to >800 years old2006

    • Author(s)
      R., Fujimura・Y., Sato・K., Nanba・H., Kato・T., Kato・T., Higashi・T., Kamijyo・Y., Katayama・H., Ohta
    • Organizer
      11th International Symposium on Microbial Ecology
    • Place of Presentation
      Austria Center,Vienna,Austria
    • Year and Date
      20060820-25
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Lithotrophic bacterial community in the 2000-y volcanic ash deposit of the Miyake-jima (Japan)2006

    • Author(s)
      Yoshinori Sato, Reiko Fujimura, Kenji Nanba, Taku Kato, Teruo Higashi, Takashi Kamijyo, Yoko Katayama, and Hiroyuki Ohta
    • Organizer
      11th International Symposium on Microbial Ecology
    • Place of Presentation
      Austria Center, Vienna, Austria
    • Year and Date
      20060820-25
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Microbial ecosystem development in the Miyake-jima (Japan) volcanic deposits ranging from 5 to>800 years old2006

    • Author(s)
      Reiko Fujimura, Yoshinori Sato, Kenji Nanba, Hiromi Kato, Taku Kato, Teruo Higashi, Takashi Kamijyo, Yoko Katayama, and Hiroyuki Ohta
    • Organizer
      11th International Symposium on Microbial Ecology
    • Place of Presentation
      Austria Center, Vienna, Austria
    • Year and Date
      20060820-25
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Predominance of Limonobacter and Herbaspirillum in recent Miyake-jima volcanic deposits2006

    • Author(s)
      Lu, H・Y., Sato・R., Fujimura・Y., Katayama・H., Ohta
    • Organizer
      第22回日本微生物生態学会
    • Place of Presentation
      東京大学
    • Year and Date
      2006-10-29
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Predominance of limnobacter and Herbaspirillum in recent Miyake-jima volcanic deposits2006

    • Author(s)
      Hongsheng Lu, Yoshinori Sato, Reiko Fujimura Yoko Katayama, and Hiroyuki Ohta
    • Organizer
      22nd Annual Convention of the Japanese Society of Microbial Ecology
    • Place of Presentation
      University of Tokyo
    • Year and Date
      2006-10-29
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] 三宅島2000年噴火堆積物中の鉄代謝微生物生態系2006

    • Author(s)
      佐藤嘉則・難波謙二・加藤 拓・東 照雄・上條隆志・太田寛行
    • Organizer
      日本土壌肥料学会2006度秋田大会
    • Place of Presentation
      秋田県立大学
    • Year and Date
      2006-09-07
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Iron-metabolizing microbial community of the 2000-y Miyake-jima volcanic deposits2006

    • Author(s)
      Yoshinori Sato, Kenji Nanba, Taku Kato, Teruo Higashi, Takashi Kamijyo, and Hiroyuki Ohta
    • Organizer
      The Annual Meeting, Japanese Society of Soil Science and Plant Nutrition(2006)
    • Place of Presentation
      Akita Prefectural University
    • Year and Date
      2006-09-07
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] 三宅島スコリア堆積物のガス代謝活性と細菌群集構造:植生レベルの異なる地点試料について2006

    • Author(s)
      藤村玲子・佐藤嘉則・陸 洪省・加藤広海・片山葉子・難波謙二・加藤 拓・東 照雄・上條隆志・太田寛行
    • Organizer
      日本土壌肥料学会2006度秋田大会
    • Place of Presentation
      秋田県立大学
    • Year and Date
      2006-09-06
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Gas-metabolizing activity and bacterial community structure of the Miyake-jima scoria deposits : analysis with samples from differently vegetated sites2006

    • Author(s)
      Reiko Fujimura, Yoshinori Sato, Hongsheng Lu, Hiromi Kato, Yoko Katayama, Kenji Nanba, Taku Kato, Teruo Higashi, Takashi Kamijyo, and Hiroyuki Ohta
    • Organizer
      The Annual Meeting, Japanese Society of Soil Science and Plant Nutrition(2006)
    • Place of Presentation
      Akita Prefectural University
    • Year and Date
      2006-09-06
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] 宅島2000年噴火堆積物中から分離された細菌の無機栄養代謝活性2005

    • Author(s)
      藤村玲子・佐藤嘉則・片山葉子・加藤広海・加藤 拓・上條隆志・太田寛行
    • Organizer
      第21回日本微生物生態学会
    • Place of Presentation
      福岡国際会議場
    • Year and Date
      20051031-1101
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Lithotrophic acticity of bacteria isolated from the volcanic deposit from the 2000-y eruption in Miyake-jima Island2005

    • Author(s)
      Reiko Fujimura, Yoshinori Sato, Yoko Katayama Hiromi Kato, Taku Kato Takashi Kamijyo, and Hiroyuki Ohta
    • Organizer
      21st Annual Convention of the Japanese Society of Microbial Ecology
    • Place of Presentation
      Fukuoka International Conference Center
    • Year and Date
      20051031-1101
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] 三宅島2000年噴火堆積物中の硫黄酸化細菌2005

    • Author(s)
      佐藤嘉則・加藤 拓・上條隆志・東 照雄・片山葉子・太田寛行
    • Organizer
      日本土壌肥料学会2005度島根大会
    • Place of Presentation
      島根大学
    • Year and Date
      2005-09-06
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Sulfur-oxidizing bacteria in the volcanic deposit from the 2000-y eruption in Miyake-jima Island2005

    • Author(s)
      Yoshinori Sato, Taku. Kato, Takashi Kamijyo, Teruo Higashi, Yoko Katayama, and Hiroyuki Ohta
    • Organizer
      The Annual Meeting, Japanese Society of Soil Science and Plant Nutrition(2005)
    • Place of Presentation
      Shimane University
    • Year and Date
      2005-09-06
    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2010-02-04  

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