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2017 Fiscal Year Research-status Report

トランスオミクス情報を一度に獲得する手法の開発

Research Project

Project/Area Number 17K19356
Research InstitutionKyushu University

Principal Investigator

大川 恭行  九州大学, 生体防御医学研究所, 教授 (80448430)

Project Period (FY) 2017-06-30 – 2019-03-31
Keywordsトランスオミクス
Outline of Annual Research Achievements

細胞の遺伝情報はゲノムにコードされており、人体を形成する細胞は全て同一の遺伝情報を持つ。そのため、細胞が固有の機能を獲得し組織形成し個体形成に至るには、選択的な遺伝子発現が不可欠である。この選択的な遺伝子発現を理解するには、(1)転写制御系の解明、転写因子の結合、ヒストン修飾やクロマチン構造変換、RNAポリメラーゼIIの遺伝子座への結合に至る一連のダイナミクスの同時測定、(2)RNA量の測定、(3)翻訳されたタンパク質量の測定に至る多角的な測定を、同一サンプルを用いて行うことが必要である。しかし、各測定はエピゲノミクス、トランスクリプトミクス、プロテオミクス、メタボロミクスのように階層ごとに計測技術が発展してきたため、同一サンプルを用いた共起情報の取得は行われていない。本研究では、各階層を横断的に測定する、すなわちトランスオミクス解析のために、網羅的な抗体を利用したトランスオミクスデータ同時取得法の確立を目指している。本年は、抗体を用いた核種プローブの作成を行いプロテオミクス検出の基盤技術を構築した。12種のタンパク質についてマウスC2C12細胞を用いた予備検討を行った。予備検討には、タンパク質量を複数且つ高感度で検出するウェスタンブロット法が必要なため本アプローチを開発し発表を行った(Kondo Y et al, PLoS One 2018)。

Current Status of Research Progress
Current Status of Research Progress

2: Research has progressed on the whole more than it was originally planned.

Reason

30年度が最終年度であるため記入しない

Strategy for Future Research Activity

30年度が最終年度であるため記入しない

  • Research Products

    (39 results)

All 2018 2017 Other

All Journal Article (19 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 19 results,  Open Access: 19 results) Presentation (18 results) (of which Int'l Joint Research: 5 results,  Invited: 11 results) Remarks (1 results) Patent(Industrial Property Rights) (1 results) (of which Overseas: 1 results)

  • [Journal Article] Identification of miR-305, a microRNA that promotes aging, and its target mRNAs in Drosophila2018

    • Author(s)
      Ueda Makiko、Sato Tetsuya、Ohkawa Yasuyuki、Inoue Yoshihiro H.
    • Journal Title

      Genes to Cells

      Volume: 23 Pages: 80~93

    • DOI

      10.1111/gtc.12555

    • Peer Reviewed / Open Access
  • [Journal Article] Histone H3.3 sub-variant H3mm7 is required for normal skeletal muscle regeneration2018

    • Author(s)
      Harada Akihito、Maehara Kazumitsu、Ono Yusuke、Taguchi Hiroyuki、Yoshioka Kiyoshi、Kitajima Yasuo、Xie Yan、Sato Yuko、Iwasaki Takeshi、Nogami Jumpei、Okada Seiji、Komatsu Tetsuro、Semba Yuichiro、Takemoto Tatsuya、Kimura Hiroshi、Kurumizaka Hitoshi、Ohkawa Yasuyuki
    • Journal Title

      Nature Communications

      Volume: 9 Pages: -

    • DOI

      10.1038/s41467-018-03845-1

    • Peer Reviewed / Open Access
  • [Journal Article] Sensitive detection of fluorescence in western blotting by merging images2018

    • Author(s)
      Kondo Yukari、Higa Shinichiro、Iwasaki Takeshi、Matsumoto Tomoya、Maehara Kazumitsu、Harada Akihito、Baba Yoshihiro、Fujita Masatoshi、Ohkawa Yasuyuki
    • Journal Title

      PLOS ONE

      Volume: 13 Pages: 0191532~0191532

    • DOI

      10.1371/journal.pone.0191532

    • Peer Reviewed / Open Access
  • [Journal Article] Cryo-EM structure of the nucleosome containing the ALB1 enhancer DNA sequence2018

    • Author(s)
      Takizawa Yoshimasa、Tanaka Hiroki、Machida Shinichi、Koyama Masako、Maehara Kazumitsu、Ohkawa Yasuyuki、Wade Paul A.、Wolf Matthias、Kurumizaka Hitoshi
    • Journal Title

      Open Biology

      Volume: 8 Pages: 170255~170255

    • DOI

      10.1098/rsob.170255

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Roles of histone H3.5 in human spermatogenesis and spermatogenic disorders2017

    • Author(s)
      Shiraishi K.、Shindo A.、Harada A.、Kurumizaka H.、Kimura H.、Ohkawa Y.、Matsuyama H.
    • Journal Title

      Andrology

      Volume: 6 Pages: 158~165

    • DOI

      10.1111/andr.12438

    • Peer Reviewed / Open Access
  • [Journal Article] Temporal regulation of chromatin during myoblast differentiation2017

    • Author(s)
      Harada Akihito、Ohkawa Yasuyuki、Imbalzano Anthony N.
    • Journal Title

      Seminars in Cell & Developmental Biology

      Volume: 72 Pages: 77~86

    • DOI

      10.1016/j.semcdb.2017.10.022

    • Peer Reviewed / Open Access
  • [Journal Article] Ser7 of RNAPII-CTD facilitates heterochromatin formation by linking ncRNA to RNAi2017

    • Author(s)
      Kajitani Takuya、Kato Hiroaki、Chikashige Yuji、Tsutsumi Chihiro、Hiraoka Yasushi、Kimura Hiroshi、Ohkawa Yasuyuki、Obuse Chikashi、Hermand Damien、Murakami Yota
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 114 Pages: E11208~E11217

    • DOI

      10.1073/pnas.1714579115

    • Peer Reviewed / Open Access
  • [Journal Article] Histone methyltransferase G9a is a key regulator of the starvation-induced behaviors in Drosophila melanogaster2017

    • Author(s)
      Shimaji Kouhei、Tanaka Ryo、Maeda Toru、Ozaki Mamiko、Yoshida Hideki、Ohkawa Yasuyuki、Sato Tetsuya、Suyama Mikita、Yamaguchi Masamitsu
    • Journal Title

      Scientific Reports

      Volume: 7 Pages: 14763

    • DOI

      10.1038/s41598-017-15344-2

    • Peer Reviewed / Open Access
  • [Journal Article] The novel heme-dependent inducible protein, SRRD regulates heme biosynthesis and circadian rhythms2017

    • Author(s)
      Adachi Yuka、Umeda Mana、Kawazoe Asako、Sato Tetsuya、Ohkawa Yasuyuki、Kitajima Sakihito、Izawa Shingo、Sagami Ikuko、Taketani Shigeru
    • Journal Title

      Archives of Biochemistry and Biophysics

      Volume: 631 Pages: 19~29

    • DOI

      10.1016/j.abb.2017.08.006

    • Peer Reviewed / Open Access
  • [Journal Article] Biochemical and immunological characterization of a novel monoclonal antibody against mouse leukotriene B4 receptor 12017

    • Author(s)
      Sasaki Fumiyuki、Koga Tomoaki、Saeki Kazuko、Okuno Toshiaki、Kazuno Saiko、Fujimura Tsutomu、Ohkawa Yasuyuki、Yokomizo Takehiko
    • Journal Title

      PLOS ONE

      Volume: 12 Pages: e0185133

    • DOI

      10.1371/journal.pone.0185133

    • Peer Reviewed / Open Access
  • [Journal Article] The requirement of Mettl3-promoted MyoD mRNA maintenance in proliferative myoblasts for skeletal muscle differentiation2017

    • Author(s)
      Kudou Kensuke、Komatsu Tetsuro、Nogami Jumpei、Maehara Kazumitsu、Harada Akihito、Saeki Hiroshi、Oki Eiji、Maehara Yoshihiko、Ohkawa Yasuyuki
    • Journal Title

      Open Biology

      Volume: 7 Pages: 170119~170119

    • DOI

      10.1098/rsob.170119

    • Peer Reviewed / Open Access
  • [Journal Article] Evolution of the sperm methylome of primates is associated with retrotransposon insertions and genome instability2017

    • Author(s)
      Fukuda Kei、Inoguchi Yukihiro、Ichiyanagi Kenji、Ichiyanagi Tomoko、Go Yasuhiro、Nagano Masashi、Yanagawa Yojiro、Takaesu Noboru、Ohkawa Yasuyuki、Imai Hiroo、Sasaki Hiroyuki
    • Journal Title

      Human Molecular Genetics

      Volume: 26 Pages: 3508~3519

    • DOI

      10.1093/hmg/ddx236

    • Peer Reviewed / Open Access
  • [Journal Article] Persistent detection of alternatively spliced BCR-ABL variant results in a failure to achieve deep molecular response2017

    • Author(s)
      Yuda Junichiro、Miyamoto Toshihiro、Odawara Jun、Ohkawa Yasuyuki、Semba Yuichiro、Hayashi Masayasu、Miyamura Koichi、Tanimoto Mitsune、Yamamoto Kazuhito、Taniwaki Masafumi、Akashi Koichi
    • Journal Title

      Cancer Science

      Volume: 108 Pages: 2204~2212

    • DOI

      10.1111/cas.13353

    • Peer Reviewed / Open Access
  • [Journal Article] Interaction of reactive astrocytes with type I collagen induces astrocytic scar formation through the integrin?N-cadherin pathway after spinal cord injury2017

    • Author(s)
      Hara Masamitsu、Kobayakawa Kazu、Ohkawa Yasuyuki、Kumamaru Hiromi、Yokota Kazuya、Saito Takeyuki、Kijima Ken、Yoshizaki Shingo、Harimaya Katsumi、Nakashima Yasuharu、Okada Seiji
    • Journal Title

      Nature Medicine

      Volume: 23 Pages: 818~828

    • DOI

      10.1038/nm.4354

    • Peer Reviewed / Open Access
  • [Journal Article] Chd2 regulates chromatin for proper gene expression toward differentiation in mouse embryonic stem cells2017

    • Author(s)
      Semba Yuichiro、Harada Akihito、Maehara Kazumitsu、Oki Shinya、Meno Chikara、Ueda Jun、Yamagata Kazuo、Suzuki Atsushi、Onimaru Mitsuho、Nogami Jumpei、Okada Seiji、Akashi Koichi、Ohkawa Yasuyuki
    • Journal Title

      Nucleic Acids Research

      Volume: 45 Pages: 8758~8772

    • DOI

      10.1093/nar/gkx475

    • Peer Reviewed / Open Access
  • [Journal Article] GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes2017

    • Author(s)
      14.Nakayama A, Nakaoka H, Yamamoto K, Sakiyama M, Shaukat A, Toyoda Y, Okada Y, Kamatani Y, Nakamura T, Takada T , Inoue K, Yasujima T, Yuasa H, Shirahama Y, Nakashima H, Shimizu S, Higashino T, Kawamura Y, Ogata H, Kawaguchi M, Ohkawa Y,他25名, Matsuo H.
    • Journal Title

      Annals of the Rheumatic Diseases

      Volume: 76 Pages: 869~877

    • DOI

      10.1136/annrheumdis-2016-209632

    • Peer Reviewed / Open Access
  • [Journal Article] Crystal Structure and Characterization of Novel Human Histone H3 Variants, H3.6, H3.7, and H3.82017

    • Author(s)
      Taguchi Hiroyuki、Xie Yan、Horikoshi Naoki、Maehara Kazumitsu、Harada Akihito、Nogami Jumpei、Sato Koichi、Arimura Yasuhiro、Osakabe Akihisa、Kujirai Tomoya、Iwasaki Takeshi、Semba Yuichiro、Tachibana Taro、Kimura Hiroshi、Ohkawa Yasuyuki、Kurumizaka Hitoshi
    • Journal Title

      Biochemistry

      Volume: 56 Pages: 2184~2196

    • DOI

      10.1021/acs.biochem.6b01098

    • Peer Reviewed / Open Access
  • [Journal Article] Thymine DNA glycosylase modulates DNA damage response and gene expression by base excision repair-dependent and independent mechanisms2017

    • Author(s)
      Nakamura Tomohumi、Murakami Kouichi、Tada Haruto、Uehara Yoshihiko、Nogami Jumpei、Maehara Kazumitsu、Ohkawa Yasuyuki、Saitoh Hisato、Nishitani Hideo、Ono Tetsuya、Nishi Ryotaro、Yokoi Masayuki、Sakai Wataru、Sugasawa Kaoru
    • Journal Title

      Genes to Cells

      Volume: 22 Pages: 392~405

    • DOI

      10.1111/gtc.12481

    • Peer Reviewed / Open Access
  • [Journal Article] Crystal structure of the overlapping dinucleosome composed of hexasome and octasome2017

    • Author(s)
      Kato Daiki、Osakabe Akihisa、Arimura Yasuhiro、Mizukami Yuka、Horikoshi Naoki、Saikusa Kazumi、Akashi Satoko、Nishimura Yoshifumi、Park Sam-Yong、Nogami Jumpei、Maehara Kazumitsu、Ohkawa Yasuyuki、Matsumoto Atsushi、Kono Hidetoshi、Inoue Rintaro、Sugiyama Masaaki、Kurumizaka Hitoshi
    • Journal Title

      Science

      Volume: 356 Pages: 205~208

    • DOI

      10.1126/science.aak9867

    • Peer Reviewed / Open Access
  • [Presentation] ChILT- an Epigenomic Profiling for Single Cell Analysis2018

    • Author(s)
      大川恭行
    • Organizer
      CDBシンポジウム2018
    • Invited
  • [Presentation] ヒストンH3の選択による細胞分化制御機構 ~トランスクリプトミクスによるアプローチ~2018

    • Author(s)
      大川恭行
    • Organizer
      よこはまNMR研究会
    • Invited
  • [Presentation] ヒストンH3の選択による細胞分化制御機構~トランスクリプトミクスによるアプローチ~2018

    • Author(s)
      大川恭行
    • Organizer
      群馬大学生調研セミナー
    • Invited
  • [Presentation] 骨格筋再生を制御するゲノムワイドな遺伝子制御機構~ヒストンの組成変化が拓く新たなエピゲノム制御~2018

    • Author(s)
      大川恭行
    • Organizer
      PROS学術シンポジウム
    • Invited
  • [Presentation] 1細胞エピゲノム解析技術の開発2018

    • Author(s)
      大川恭行
    • Organizer
      日本がん分子標的治療学会TRワークショップ
    • Invited
  • [Presentation] ゲノムから遺伝子が選ばれる仕組み2018

    • Author(s)
      大川恭行
    • Organizer
      クロマチン一般公開シンポジウム
  • [Presentation] ヒストンバリアントによる細胞運命決定機構2017

    • Author(s)
      大川恭行
    • Organizer
      京都大学 学術講演会
    • Invited
  • [Presentation] ヒストンH3バリアントで制御される組織特異的構造2017

    • Author(s)
      大川恭行
    • Organizer
      2017年度生命科学系学会合同年次大会
  • [Presentation] ChILT - an immunoprecipitation-free epigenome profiling technology2017

    • Author(s)
      大川恭行
    • Organizer
      第12回研究所ネットワーク国際シンポジウム
  • [Presentation] Tissue-specific Chromatin Structures According to Histone H3 Variants2017

    • Author(s)
      大川恭行
    • Organizer
      研究セミナー
    • Int'l Joint Research / Invited
  • [Presentation] ヒストンバリアントによる組織特異的クロマチン構造の形成2017

    • Author(s)
      大川恭行
    • Organizer
      日本遺伝学会第89回大会
    • Invited
  • [Presentation] Myogenic chromatin structure is formed with the novel histone H3 variant.2017

    • Author(s)
      大川恭行
    • Organizer
      EMBO Workshop Histone Vriants
    • Int'l Joint Research
  • [Presentation] ChILT - an Immunoprecipitation-free Epigenome Profiling Technology.2017

    • Author(s)
      大川恭行
    • Organizer
      1st Munchen-Japan Mini Symposium
    • Int'l Joint Research / Invited
  • [Presentation] 骨格筋再生の核内プログラム~トランスクリプトミクス解析の新たな展開~2017

    • Author(s)
      大川恭行
    • Organizer
      運動器科学研究会
    • Invited
  • [Presentation] Tissue-specific Chromatin Structures According to Histone H3 Variants2017

    • Author(s)
      大川恭行
    • Organizer
      第12回国際ゲノム会議
    • Invited
  • [Presentation] Myogenic Chromatin Structure Is Formed with the Histone H3 Variant H3mm72017

    • Author(s)
      大川恭行
    • Organizer
      Gordon Research Conference
    • Int'l Joint Research
  • [Presentation] ChiLT-an Immunoprecipitation-free Epigenome Profiling Technology2017

    • Author(s)
      大川恭行
    • Organizer
      Single Cell Omics (E3)
    • Int'l Joint Research
  • [Presentation] ヒストンH3バリアントによる骨格筋特異的クロマチン構造制御2017

    • Author(s)
      大川恭行
    • Organizer
      第11回日本エピジェネティクス研究会年会
  • [Remarks] Ohawa lab

    • URL

      http://tx.bioreg.kyushu-u.ac.jp/

  • [Patent(Industrial Property Rights)] DNA結合タンパク質の結合領域の近傍に所望のDNA断片を挿入する方法2017

    • Inventor(s)
      大川恭行, 原田哲仁, 胡桃坂仁志, 木村宏, 他3名
    • Industrial Property Rights Holder
      大川恭行, 原田哲仁, 胡桃坂仁志, 木村宏, 他3名
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      PCT/JP2017/019309
    • Overseas

URL: 

Published: 2018-12-17  

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