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2010 Fiscal Year Final Research Report

Studies on vertebrate development by the transposon-mediated Gal4 enhancer trap method

Research Project

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Project/Area Number 18101008
Research Category

Grant-in-Aid for Scientific Research (S)

Allocation TypeSingle-year Grants
Research Field 基礎ゲノム科学
Research InstitutionNational Institute of Genetics

Principal Investigator

KAWAKAMI Koichi  National Institute of Genetics, 個体遺伝研究系, 教授 (70195048)

Project Period (FY) 2006 – 2010
Keywordsゲノム機能 / 発生遺伝学
Research Abstract

We successfully developed the Gal4 enhancer trap and gene trap methods with the Tol2 transposable element, and generated more than 1,000 transgenic fish lines that express Gal4 in spatially and temporally restricted fashions during embryonic development. By using these transgenic fish, we disclosed mechanisms of organogenesis including the lateral line, lymphatic system, lens, retina and notochord. Further, we analyzed behavioral abnormalities caused by inhibition of spinal sensory- and inter-neurons and a specific subset of the olfactory sensory neurons. Furthermore, we visualized firing of motor circuits by calcium imaging. Thus, we established the basis for studies of developmental biology and neuroscience in a vertebrate.

  • Research Products

    (31 results)

All 2011 2010 2009 2008 2007 2006 Other

All Journal Article (20 results) Presentation (7 results) Book (1 results) Remarks (2 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Genetic visualization with an improved GCaMP calcium indicator reveals spatiotemporal activation of the spinal motor neurons in zebrafish.2011

    • Author(s)
      Muto A., Ohkura M., Kotani T., Higashijima S.-i., Nakai J., Kawakami K.
    • Journal Title

      Proc.Nat l.Acad.Sci.USA 108

      Pages: 5425-5430

  • [Journal Article] The habenula is crucial for experience-dependent modification of fear responses in zebrafish.2010

    • Author(s)
      Agetsuma M., Aizawa H., Aoki T., Nakayama R., Takahoko M., Goto M., Sassa T., Amo R., Shiraki T., Kawakami K., Hosoya T., Higashijima, S., Okamoto H.
    • Journal Title

      Nature Neuroscience 13

      Pages: 1354-1356

  • [Journal Article] zebrafish gene trap and enhancer trap database.2010

    • Author(s)
      Kawakami K., Abe G., Asada T., Asakawa K., Fukuda R., Ito A., Lal P., Mouri N., Muto A., Suster M.L., Takakubo H., Urasaki A., Wada H., Yoshida M. zTrap
    • Journal Title

      BMC Developmental Biology 10

      Pages: 105

  • [Journal Article] The ubiquitin proteasome system is required for cell proliferation of the lens epithelium and for differentiation of lens fiber cells in zebrafish.2010

    • Author(s)
      Imai F., Yoshizawa A., Fujimori-Tonou N., Kawakami K., Masai I.
    • Journal Title

      Development 137

      Pages: 3257-3268

  • [Journal Article] Sex reversal in zebrafish fancl mutants is caused by Tp53-mediated germ cell apoptosis.2010

    • Author(s)
      Rodriguez-Mari A., Ca-estro C., Bremiller R.A,, Nguyen-Johnson A., Asakawa K., Kawakami K., Postlethwait J.H.
    • Journal Title

      PLoS Genetics 6

      Pages: e1001034

  • [Journal Article] Arteries provide essential guidance cues for lymphatic endothelial cells in the zebrafish trunk.2010

    • Author(s)
      Bussmann J., Bos F.L., Urasaki A., Kawakami K., Duckers H.J., Schulte-Merker S.
    • Journal Title

      Development 137

      Pages: 2653-2657

  • [Journal Article] Mib-Jag1-Notch signalling regulates patterning and structural roles of the notochord by controlling cell-fate decisions.2010

    • Author(s)
      Yamamoto M., Morita R., Mizoguchi T., Matsuo H., Isoda M., Ishitani T., Chitnis A.B., Matsumoto K., Crump J.G., Hozumi K., Yonemura S., Kawakami K., Itoh M.
    • Journal Title

      Development 137

      Pages: 2527-2537

  • [Journal Article] Mys protein regulates protein kinase A activity by interacting with regulatory type Ia subunit during vertebrate development.2010

    • Author(s)
      Kotani T., Iemura S.I., Natsume T., Kawakami K., Yamashita M.
    • Journal Title

      The Journal of Biological Chemistry 285

      Pages: 5106-5116

  • [Journal Article] Transposon-mediated BAC transgenesis in zebrafish and mice.2009

    • Author(s)
      Suster M.L., Sumiyama K., Kawakami K.
    • Journal Title

      BMC Genomics 10

      Pages: 477

  • [Journal Article] Dynamic coupling of pattern formation and morphogenesis in the developing vertebrate retina2009

    • Author(s)
      Picker A., Cavodeassi F., Machate A., Bernauer S., Hans S., Abe G., Kawakami K., Wilson S.W., Brand M.
    • Journal Title

      PLoS Biology

      Pages: e1000214

  • [Journal Article] Olfactory neural circuitry for attraction to amino acids revealed by transposon-mediated gene trap approach in zebrafish.2009

    • Author(s)
      Koide T., Miyasaka N., Morimoto K., Asakawa K., Urasaki A., Kawakami K., Yoshihara Y.
    • Journal Title

      Proc.Natl.Acad.Sci.USA 106

      Pages: 9884-9889

  • [Journal Article] Afferent neurons of the zebrafish lateral line are strict selectors of hair-cell orientation.2009

    • Author(s)
      Faucherre A., Pujol-Marti J., Kawakami K., L-pez-Schier H.
    • Journal Title

      PLoS ONE 4

      Pages: e4477

  • [Journal Article] Efficient transposition of the Tol2 transposable element from a single-copy donor in zebrafish.2008

    • Author(s)
      Urasaki A., Asakawa K., Kawakami K.
    • Journal Title

      Proc.Natl.Acad.Sci.USA 105

      Pages: 19827-19832

  • [Journal Article] misty somites, a maternal effect gene identified by transposon-mediated insertional mutagenesis in zebrafish that is essential for the somite boundary maintenance.2008

    • Author(s)
      Kotani T., Kawakami K.
    • Journal Title

      Developmental Biology 316

      Pages: 383-396

  • [Journal Article] Genetic dissection of neural circuits by Tol2 transposon-mediated Gal4 gene and enhancer trapping in zebrafish.2008

    • Author(s)
      Asakawa K., Suster M.L., Mizusawa K., Nagayoshi S., Kotani T., Urasaki A., Kishimoto Y., Hibi M., Kawakami K.
    • Journal Title

      Proc.Natl.Acad.Sci.USA 105

      Pages: 1255-1260

  • [Journal Article] Insertional mutagenesis by the Tol2 transposon-mediated enhancer trap approach generated mutations in two developmental genes : tcf7 and synembryn-like.2008

    • Author(s)
      Nagayoshi S., Hayashi E., Abe G., Osato N., Asakawa K., Urasaki A., Horikawa K., Ikeo, K., Takeda H., Kawakami K.
    • Journal Title

      Development 135

      Pages: 159-169

  • [Journal Article] Tol2 : a versatile gene transfer vector in vertebrates.2007

    • Author(s)
      Kawakami K.
    • Journal Title

      Genome Biology 8 Suppl 1

      Pages: S7

  • [Journal Article] A cardiac myosin light chain kinase regulates sarcomere assembly in the vertebrate heart.2007

    • Author(s)
      Seguchi O., Takashima S., Yamazaki S., Asakura M., Asano Y., Shintani Y., Wakeno M., Minamino T., Kondo H., Furukawa H., Nakamaru K., Naito, A., Takahashi T., Ohtsuka T., Kawakami K., Isomura T., Kitamura S., Tomoike H., Mochizuki N., Kitakaze M.
    • Journal Title

      The Journal of Clinical Investigation 117

      Pages: 2812-2824

  • [Journal Article] Targeting neural circuitry in zebrafish using GAL4 enhancer trapping.2007

    • Author(s)
      Scott E.K., Mason L., Arrenberg A.B., Ziv L., Gosse N.J., Xiao T., Chi N.C., Asakawa K., Kawakami K., Baier H.
    • Journal Title

      Nature Methods 4

      Pages: 323-326

  • [Journal Article] Functional dissection of the Tol2 transposable element identified the minimal cis-sequence and a highly repetitive sequence in the subterminal region essential for transposition.2006

    • Author(s)
      Urasaki A., Morvan G., Kawakami K.
    • Journal Title

      Genetics 174

      Pages: 639-649

  • [Presentation] The Tol2-mediated Gal4-UAS system and its application to the study of functional neural circuits in zebrafish.2010

    • Author(s)
      Kawakami K.
    • Organizer
      Imaging structure and function in the zebrafish brain.
    • Year and Date
      20101213-20101215
  • [Presentation] Transgenesis and genome analysis with the Tol2 transposable element in mice and zebrafish.2010

    • Author(s)
      Kawakami K.
    • Organizer
      FASEB summer research conference.
    • Place of Presentation
      Steamboat, USA.
    • Year and Date
      20100606-20100611
  • [Presentation] Recent advances in the Tol2 transposon technology in zebrafish.2009

    • Author(s)
      Kawakami K.
    • Organizer
      3rd Strategic Conference of Zebrafish Investigators.
    • Place of Presentation
      Asilomar, USA.
    • Year and Date
      20090124-20090128
  • [Presentation] Transposon-mediated gene trapping and enhancer trapping in zebrafish.2008

    • Author(s)
      Kawakami K.
    • Organizer
      6th Annual International Conference on Transposition and Animal Biotechnology.
    • Place of Presentation
      Berlin, Germany.
    • Year and Date
      20080619-20080621
  • [Presentation] Genetic dissection of neural circuits by Tol2 transposon-mediated Gal4 gene and enhancer trapping in zebrafish.2008

    • Author(s)
      Kawakami K.
    • Organizer
      Asia Pacific Zebrafish Network Meeting.
    • Place of Presentation
      Auckland, New Zealand
    • Year and Date
      20080217-20080220
  • [Presentation] Transposon-mediated gene trapping and enhancer trapping in zebrafish.2007

    • Author(s)
      Kawakami K.
    • Organizer
      Developmental Biology and Biomedical Research.
    • Place of Presentation
      Agra, India.
    • Year and Date
      20071018-20071019
  • [Presentation] Transposon-mediated gene and enhancer trapping in zebrafish.2007

    • Author(s)
      Kawakami K.
    • Organizer
      The 16th Korea Genome Organization Conference.
    • Place of Presentation
      Seoul, Korea.
    • Year and Date
      20070913-20070914
  • [Book] Zebrafish : methods and protocols2009

    • Author(s)
      Lieschke G.J., Oates A.C., Kawakami K.
    • Publisher
      Humana Press (New York)
  • [Remarks] ・ホームページ

    • URL

      http://kawakami.lab.nig.ac.jp/

  • [Remarks] ・データベース zTrap : zebrafish gene trap and enhancer trap database

    • URL

      http://kawakami.lab.nig.ac.jp/zTrap/

  • [Patent(Industrial Property Rights)] ボツリヌス毒素遺伝子トランスジェニックフィッシュ2009

    • Inventor(s)
      川上浩一,サスターマキシミリアーノ
    • Industrial Property Rights Holder
      大学共同利用機関法人情報・システム研究機構
    • Industrial Property Number
      特許,特願2009-211821
    • Filing Date
      2009-09-14

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Published: 2012-01-26   Modified: 2016-04-21  

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