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2010 Fiscal Year Final Research Report

Functional Control by Modulating the Nucleic Acid Structure Based on Mismatch Base Pair Stabilization

Research Project

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Project/Area Number 18105006
Research Category

Grant-in-Aid for Scientific Research (S)

Allocation TypeSingle-year Grants
Research Field Chemistry related to living body
Research InstitutionOsaka University

Principal Investigator

NAKATANI Kazuhiko  Osaka University, 産業科学研究所, 教授 (70237303)

Co-Investigator(Kenkyū-buntansha) DOHNO Chikara  大阪大学, 産業科学研究所, 准教授 (60420395)
HAGIHARA Masaki  大阪大学, 産業科学研究所, 助教 (40403000)
TAKEI Fumie  大阪大学, 産業科学研究所, 助教 (30252711)
ZHOU Daーyang  大阪大学, 産業科学研究所, 助教 (00324848)
Project Period (FY) 2006 – 2010
Keywords核酸 / 光制御 / ミスマッチ / 分子認識 / DNAナノ構造 / ナノテクノロジー
Research Abstract

We have established novel concept that small synthetic ligand, which selectively binds to DNA mismatch, could control higher order structures of DNA. DNA hybridization could be reversibly controlled by newly developed photoresponsive mismatch binding ligand, which allowed us to modulate various DNA-based functions depending on the ligand-specified DNA structures.

  • Research Products

    (23 results)

All 2011 2010 2009 2008 2007 2006 Other

All Journal Article (15 results) (of which Peer Reviewed: 15 results) Presentation (3 results) Book (1 results) Remarks (1 results) Patent(Industrial Property Rights) (3 results)

  • [Journal Article] Ligand-Assisted Complex of Two DNA Hairpin Loops.2011

    • Author(s)
      Hong, C.; Hagihara, M.; Nakatani, K.Angew.
    • Journal Title

      Chem.Int.Ed. 50

      Pages: 4390-4393.

    • Peer Reviewed
  • [Journal Article] Ligand Inducible Assembly of a DNA Tetrahedron.2011

    • Author(s)
      Dohno, C.; Atsumi, H.; Nakatani, K.
    • Journal Title

      Chem.Commun. 47

      Pages: 3499-3501.

    • Peer Reviewed
  • [Journal Article] Antisense-Induced Guanine Quadruplexes Inhibit Reverse Transcription by HIV-1 Reverse Transcriptase.2010

    • Author(s)
      Hagihara, M.; Yamauchi, L.; Seo, A.; Yoneda, K.; Senda, M.; Nakatani, K.
    • Journal Title

      J.Am.Chem.Soc. 132

      Pages: 11171-11178.

    • Peer Reviewed
  • [Journal Article] Non-covalent assembly of TEMPO radicals pair-wise embedded on a DNA duplex.2010

    • Author(s)
      Atsumi, H.; Maekawa, K.; Nakazawa, S.; Shiomi, D.; Sato, K.; Kitagawa, M.; Takui, T., Nakatani, K.
    • Journal Title

      Chem.Lett.(Editor's Choice) 39

      Pages: 556-557.

    • Peer Reviewed
  • [Journal Article] Fluorescent Indicator-Displacement Assay for Ligand-RNA Interactions2010

    • Author(s)
      Zhang, J.; Umemoto, S.; Nakatani, K.
    • Journal Title

      J.Am.Chem.Soc. 132

      Pages: 3660-3661.

    • Peer Reviewed
  • [Journal Article] Programmed Assembly of Organic Radicals on DNA.2010

    • Author(s)
      Maekawa, K.; Nakazawa, S.; Atsumi, H.; Shiomi, D.; Sato, K.; Kitagawa, M.; Takui, T.; Nakatani, K.
    • Journal Title

      Chem.Commun. 46

      Pages: 1247-1249.

    • Peer Reviewed
  • [Journal Article] Recognition of Mismatched Base Pairs in DNA2009

    • Author(s)
      Nakatani, K.
    • Journal Title

      Bull.Chem.Soc.Jpn.(総説) 82

      Pages: 1055-1069.

    • Peer Reviewed
  • [Journal Article] Secondary Structure-Inducible Ligand Fluorescence Coupled with PCR2009

    • Author(s)
      Takei, F.; Igarashi, M.; Hagihara, M.; Oka, Y.; Soya, Y.; Nakatani, K.
    • Journal Title

      Angew.Chem.Int.Ed. 48

      Pages: 7822-7824.

    • Peer Reviewed
  • [Journal Article] A Light-Driven, Supramolecular Optical Switch2009

    • Author(s)
      Uno, S.; Dohno, C.; Bittermann, H.; Malinovskii, V.L.; Haner, R.; Nakatani, K.
    • Journal Title

      Angew.Chem.Int.Ed. 48

      Pages: 7362-7365.

    • Peer Reviewed
  • [Journal Article] Small molecule affecting the replication of trinucleotide repeat d(GAA)n2009

    • Author(s)
      He, H.; Hagihara, M.; Nakatani, K.
    • Journal Title

      Chem.Eur.J. 15

      Pages: 10641-10648.

    • Peer Reviewed
  • [Journal Article] Photoswitchable Unsymmetrical Ligand for DNA Hetero-Mismatches2009

    • Author(s)
      Dohno, C.; Yamamoto, T.; Nakatani, K.
    • Journal Title

      Eur.J.Org.Chem.

      Pages: 4051-4058.

    • Peer Reviewed
  • [Journal Article] RNA Aptamers That Reversibly Bind Photoresponsive Azobenzene-Containing Peptides2009

    • Author(s)
      Hayashi, G.; Hagihara, M.; Nakatani, K.
    • Journal Title

      Chem.Eur.J. 15

      Pages: 424-432.

    • Peer Reviewed
  • [Journal Article] Photoswitchable Molecular Glue for DNA2007

    • Author(s)
      Dohno, C.; Uno, S.; Nakatani
    • Journal Title

      K.J.Am.Chem.Soc. 129

      Pages: 11898-11899.

    • Peer Reviewed
  • [Journal Article] Photoregulation of a Peptide-RNA Interaction on a Gold Surface2007

    • Author(s)
      Hayashi, G.; Hagihara, M.; Dohno, C.; Nakatani, K.
    • Journal Title

      J.Am.Chem.Soc. 129

      Pages: 8678-8679.

    • Peer Reviewed
  • [Journal Article] Control of DNA hybridization by photoswitchable molecular glue.

    • Author(s)
      Dohno, C.; Nakatani, K.
    • Journal Title

      Chem.Soc.Rev.(総説) in press.

    • Peer Reviewed
  • [Presentation] DNA・RNA に結合する小分子現状と課題2011

    • Author(s)
      中谷和彦
    • Organizer
      第13回生命化学研究会「分子で拓く生命化学」
    • Place of Presentation
      仙台(招待講演)
    • Year and Date
      2011-01-08
  • [Presentation] A Light-Driven, Light-switching DNA Device2010

    • Author(s)
      中谷和彦
    • Organizer
      DNA Photonics Symposium at the PacifiChem2010
    • Place of Presentation
      Honolulu, USA(招待講演)
    • Year and Date
      2010-12-17
  • [Presentation] Small molecules binding to the hairpin secondary structure of trinucleotide repeat sequences, Nucleic Acid Based2010

    • Author(s)
      中谷和彦
    • Organizer
      Therapeutics Symposium at the PacifiChem2010
    • Place of Presentation
      Honolulu, USA(招待講演)
    • Year and Date
      2010-12-16
  • [Book] ゲノム化学2007

    • Author(s)
      齋藤烈、杉山弘、中谷和彦編
    • Total Pages
      214
    • Publisher
      化学同人
  • [Remarks] ホームページ

    • URL

      http://www.sanken.osaka-u.ac.jp/labs/rbc/

  • [Patent(Industrial Property Rights)] 一塩基多型を検出する方法および一塩基多型を検出するための試薬キット2010

    • Inventor(s)
      中谷和彦、武井史恵、萩原正規
    • Industrial Property Rights Holder
      大阪大学
    • Industrial Property Number
      特許,特願2010-054658.
    • Filing Date
      2010-03-11
  • [Patent(Industrial Property Rights)] 核酸と被験物質との結合親和性を測定するための組成物及びその利用2008

    • Inventor(s)
      中谷和彦、張 錦華、梅本詩織、笹岡眞一、和崎隆博
    • Industrial Property Rights Holder
      大阪大学、日東化成株式会社
    • Industrial Property Number
      特許,特願2009-519347
    • Filing Date
      2008-07-30
  • [Patent(Industrial Property Rights)] DNA二本鎖形成制御2006

    • Inventor(s)
      中谷和彦、Peng Tao、堂野主税
    • Industrial Property Rights Holder
      大阪大学
    • Industrial Property Number
      特許,特願2006-162265.
    • Filing Date
      2006-06-12

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Published: 2012-01-26   Modified: 2016-04-21  

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