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2010 Fiscal Year Final Research Report

Development of multifunctional envelope-type nano device encapsulating highly nuclease resistant oligonucleotides

Research Project

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Project/Area Number 18109001
Research Category

Grant-in-Aid for Scientific Research (S)

Allocation TypeSingle-year Grants
Research Field Drug development chemistry
Research InstitutionHokkaido University

Principal Investigator

MATSUDA Akira  Hokkaido University, 大学院・薬学研究院, 教授 (90157313)

Co-Investigator(Kenkyū-buntansha) HARASHIMA Hideyoshi  北海道大学 (00183567)
MINAKAWA Noriaki  北海道大学 (40209820)
Project Period (FY) 2006 – 2010
Keywordsヌクレアーゼ抵抗性 / 4'-チオ核酸 / siRNA / ベクター / 薬物送達システム
Research Abstract

(1) Small interfering RNAs (siRNAs) containing 2'-O-methyl-4'-thioribonucleosides, nuclease-resistant nucleosides, encapsulated in MEND (multifunctional envelope-type nano-device) showed a long-term luciferase gene silencing effect in HeLa cells and lowering-effect of cholesterol concentrations in mouse blood. This modification did not act as triggers of the innate immune response. (2) In order to construct a nuclease-resistant vector, enzymatic incorporation using 2'-deoxy-4'-thioribonucleoside 5'-triphosphates (d^SNTPs) by PCR was tried. Although two dNTPs could be substituted by d^SNTPs to produce 4'-thioDNA with 30-80% efficiency of the unmodified dNTPs, further increased substitution gave unfruitful results. Therefore, chemically synthesized 42mer 4'-thioDNAs (2dNs were substituted by 2d^SNs) were ligated to construct the luciferase vectors by a ligase. When these vectors were transfected into NIH3T3 cells, the modified vectors showed about 20-40% activity of that of the unmodified vector after 24-72 h. (3) siRNAs encapsulated in MENDs which have a shorter length of the pH-sensitive fusogenic peptide (shGALA) or a PEG derivative with a cleavage site of matrix metalloproteinase (PPD) showed improved knockdown ability of the target gene in vitro and in vivo.

  • Research Products

    (32 results)

All 2010 2009 2008 2007 2006 Other

All Journal Article (28 results) Remarks (2 results) Patent(Industrial Property Rights) (2 results)

  • [Journal Article] Selective detection of 5-formyl-2'-deoxyuridine, an oxidative lesion of thymidine, in DNA by a fluorogenic reagent2010

    • Author(s)
      Hirose W., Sato K., Matsuda A.
    • Journal Title

      Angew.Chem.Int.Ed.Engl. 49

      Pages: 8392-8394

  • [Journal Article] Convenient RNA synthesis using a phosphoramidite possessing a biotinylated photocleavable group.2010

    • Author(s)
      Tomaya K.; Takahashi M.; Minakawa N.; Matsuda A.
    • Journal Title

      Org.Lett. 12

      Pages: 3836-3839

  • [Journal Article] Incorporation of 2'-deoxy-2'-isonucleoside 5'-triphosphates into DNA by A-and B-family DNA polymerases with different recognition mechanisms.2010

    • Author(s)
      Ogino T.; Sato K.; Matsuda A.
    • Journal Title

      ChemBioChem. 11

      Pages: 2597-2605

  • [Journal Article] Design of a dual-ligand system using a specific ligand and cell penetrating peptide, resulting in a synergistic effect on selectivity and cellular uptake.2010

    • Author(s)
      Takara K.; Hatakeyama H.; Ohga N.; Hida K.; Harashima H.
    • Journal Title

      Int J Pharm. 396

      Pages: 143-148

  • [Journal Article] Ornithine and tryptophan analogs as efficient polycations for short interference RNA delivery to tumor cells.2010

    • Author(s)
      Sato Y.; Hatakeyama H.; Harashima H.
    • Journal Title

      Biol Pharm Bull. 33

      Pages: 1246-1249

  • [Journal Article] Nanoparticles for ex vivo siRNA delivery to dendritic cells for cancer vaccines : Programmed endosomal escape and dissociation.2010

    • Author(s)
      Akita H.; Kogure K.; Moriguchi R.; Nakamura Y.; Higashi T.; Nakamura T.; Serada S.; Fujimoto M.; Naka T.; Futaki S.; Harashima H.
    • Journal Title

      J.Control.Release 143

      Pages: 311-317

  • [Journal Article] Unnatural imidazopyridopyrimidine : naphthyridine base pairs : selective incorporation and extension reaction by Deep Vent (exo-) DNA polymerase.2009

    • Author(s)
      Ogata S.; Takahashi M.; Minakawa N.; Matsuda A.
    • Journal Title

      Nucleic Acids Res. 37

      Pages: 5602-5609

  • [Journal Article] Selective recognition of unnatural imidazopyridopyrimidine : naphthyridine base pairs consisting of four hydrogen bonds by the Klenow fragment.2009

    • Author(s)
      Minakawa N.; Ogata S.; Takahashi M.; Matsuda A.
    • Journal Title

      J.Am.Chem.Soc. 131

      Pages: 1644-1645

  • [Journal Article] Synthesis and characterization of 2'-modified-4'-thioRNA : a comprehensive comparison of nuclease stability.2009

    • Author(s)
      Takahashi M.; Minakawa N.; Matsuda A.
    • Journal Title

      Nucleic Acids Res. 37

      Pages: 1353-1362

  • [Journal Article] Efficient short interference RNA delivery to tumor cells using a combination of octaarginine, GALA and tumor-specific, cleavable polyethylene glycol system.2009

    • Author(s)
      Sakurai Y.; Hatakeyama H.; Akita H.; Oishi M.; Nagasaki Y.; Futaki S.; Harashima H.
    • Journal Title

      Biol Pharm Bull. 32

      Pages: 928-932

  • [Journal Article] A pH-sensitive fusogenic peptide facilitates endosomal escape and greatly enhances the gene silencing of siRNA-containing nanoparticles in vitro and in vivo.2009

    • Author(s)
      Hatakeyama H.; Ito E.; Akita H.; Oishi M.; Nagasaki Y.; Futaki S.; Harashima H.
    • Journal Title

      J Control Release. 139

      Pages: 127-132

  • [Journal Article] Investigations toward the selection of fullymodified 4'-thioRNA aptamers : optimization of in vitro transcription step in the presence of 4'-thioNTPs.2008

    • Author(s)
      Minakawa N.; Sanji M.; Kato Y.; Matsuda A.
    • Journal Title

      Bioorg.Med.Chem. 16

      Pages: 9450-9456

  • [Journal Article] Synthesis ans crystal structure of 2'-deoxy-2'-fluoro-4'-thioribonucleosides : substrates for the synthesis of novel modified RNAs.2008

    • Author(s)
      Takahashi M.; Daidouji S.; Shiro M.; Minakawa N.; Matsuda A.
    • Journal Title

      Tetrahedron 64

      Pages: 4313-4324

  • [Journal Article] Unexpected A-form formation of 4'-thioDNA in solotion, as revealed by NMR, and the implication on the mechanism of nucleaseresistance.2008

    • Author(s)
      Matsugami A.; Ohyama T.; Inada M.; Inoue N.; Minakawa N.; Matsuda A.; Katahira M.
    • Journal Title

      Nucleic Acids Res. 36

      Pages: 1805-1812

  • [Journal Article] Triazole-linked dumbbell oligodeoxynucleotides with NF-kN binding ability as potential decoy molecules.2008

    • Author(s)
      Nakane M.; Ichikawa S.; Matsuda A.
    • Journal Title

      J.Org.Chem. 73

      Pages: 1842-1851

  • [Journal Article] Oligonucleotides containing 3-bromo-3-deazaadenine and 7-bromo-7-deazaadenine 2'-deoxynucleosides as chemical probes to investigate DNA-protein interactions.2008

    • Author(s)
      Minakawa N.; Kawano Y.; Murata S.; Inoue N.; Matsuda A.
    • Journal Title

      ChemBioChem. 9

      Pages: 464-470

  • [Journal Article] Octaarginine-and octalysine-modified nanoparticles have different modes of endosomal escape.2008

    • Author(s)
      El-Sayed A.; Khalil IA.; Kogure K.; Futaki S.; Harashima H.
    • Journal Title

      J Biol Chem. 283

      Pages: 23450-23461

  • [Journal Article] An artificial virus-like nano carrier system: Enhanced endosomal escape of nano-particles via synergistic action of pH-sensitive fusogenic peptide derivatives. Anal.2008

    • Author(s)
      Sasaki K.; Kogure K.; Chaki S.; Nakamura Y.; Hamada H.; Ueno M.; Futaki S.; Harashima H.
    • Journal Title

      Bioanal.Chem. 391

      Pages: 2717-2727

  • [Journal Article] Amplification of 4'-thioDNA in the presence of 4'-thio-dTTP and 4'-thio-dCTP, and 4'-thioDNA-directed transcription in vitro and in mammalian cells.2007

    • Author(s)
      Inoue N.; Shionoya A.; Minakawa N.; Ogawa N.; Matsuda A.
    • Journal Title

      J.Am.Chem. Soc. 129

      Pages: 15424-15425

  • [Journal Article] Study of modification pattern-RNAi activity relationships using siRNAs modified with 4'-thioribonucleosides, finding an effective modification irrespective of target sequence.2007

    • Author(s)
      Hoshika S.; Minakawa N.; Shionoya A.; Imada K.; Ogawa N.; Matsuda A.
    • Journal Title

      ChemBioChem. 8

      Pages: 2133-2138

  • [Journal Article] Modular bent DNAs : A new class of artificial DNAs with a protein binding ability.2007

    • Author(s)
      Murata S.; Mizumura Y.; Hino K.; Ueno Y.; Ichikawa S.; Matsuda A.
    • Journal Title

      J.Am.Chem.Soc. 129

      Pages: 10300-10301

  • [Journal Article] Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoylmodified uracils reveal the basis for properties as antigene and antisense molecules.2007

    • Author(s)
      Juan E. C. M.; Kondo J.; Kurihara T.; Ito T.; Ueno Y.; Matsuda A.; Takenaka A.
    • Journal Title

      Nucleic Acids Res. 35

      Pages: 1969-1977

  • [Journal Article] Tumor targeting of doxorubicin by anti MT1-MMP antibodymodified PEG liposomes.2007

    • Author(s)
      Hatakeyama H.; Akita H.; Ishida E.; Hashimoto K.; Kobayashi H.; Aoki T.; Yasuda J.; Obata K.; Kikuchi H.; Ishida T.; Kiwada H.; Harashima H.
    • Journal Title

      Int.J.Pharm. 342

      Pages: 194-200

  • [Journal Article] Octaarginine-modified multifunctional envelope-type nano device for siRNA.2007

    • Author(s)
      Nakamura Y.; Kogure K.; Futaki S.; Harashima H.
    • Journal Title

      J.Cont.Rel. 119

      Pages: 360-367

  • [Journal Article] Synthesis and characterization of oligodeoxynucleotides containing naphthyridine : imidazopyridopyrimidine base pairs at their sticky ends. Application as thermally stabilized decoy molecules.2006

    • Author(s)
      Hikishima S.; Minakawa N.; Kuramoto K.; Ogata S.; Matsuda A.
    • Journal Title

      ChemBioChem 7

      Pages: 1970-1975

  • [Journal Article] Synthesis and properties of 4'-thioDNA: unexpected RNA-like behavior of 4'-thioDNA.2006

    • Author(s)
      Inoue N.; Minakawa N.; Matsuda A.
    • Journal Title

      Nucleic Acids Res. 34

      Pages: 3476-3483

  • [Journal Article] Development of a novel systemic gene delivery system for cancer therapy with a tumor-specific cleavable PEG-lipid.2006

    • Author(s)
      Hatakeyama H.; Akita H.; Kogure K.; Oishi M.; Nagasaki Y.; Kihira Y.; Ueno M.; Kobayashi H.; Kikuchi H.; Harashima H.
    • Journal Title

      Gene Therapy 14

      Pages: 68-77

  • [Journal Article] Cellular uptake and subsequent intracellular trafficking of R8-liposomes introduced at low temperature.2006

    • Author(s)
      Iwasa A.; Akita H.; Khalil IA.; Kogure K.; Futaki S.; Harashima H.
    • Journal Title

      BBA-Biomembranes 1758

      Pages: 713-720

  • [Remarks] ホームページ等

    • URL

      http://www.pharm.hokudai.ac.jp/org/yakka01.html

  • [Remarks]

    • URL

      http://www.pharm.hokudai.ac.jp/org/yakusetu01.html

  • [Patent(Industrial Property Rights)] 機能性ポリペプチド及び当該ポリペプチドで修飾された脂質膜構造体2010

    • Inventor(s)
      原島秀吉、秋田英万、畠山浩人、他
    • Industrial Property Rights Holder
      北海道大学
    • Industrial Property Number
      特願,2010-39667
    • Filing Date
      2010-02-25
  • [Patent(Industrial Property Rights)] shRNA発現用DNAカセット2007

    • Inventor(s)
      松田彰,南川典昭,塩野谷亜紀,尾川直樹
    • Industrial Property Rights Holder
      北海道大学
    • Industrial Property Number
      特願,2007-298097
    • Filing Date
      2007-11-16

URL: 

Published: 2012-01-26   Modified: 2016-04-21  

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