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2008 Fiscal Year Final Research Report

Systems biology of ERK signaling networks

Research Project

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Project/Area Number 18200021
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Bioinformatics/Life informatics
Research InstitutionThe University of Tokyo

Principal Investigator

KURODA Shinya  The University of Tokyo, 大学院・理学系研究科, 教授 (50273850)

Project Period (FY) 2006 – 2008
Keywordsシグナル伝達 / システム生物学
Research Abstract

ERK signaling networks can regulate various cellular processes. One of the remarkable features of signaling networks is that the same signaling networks can regulate multiple cellular functions. In PC12 cells, EGF and NGF induces transient and sustained ERK activation, leading to cell proliferation and differentiation, respectively. In this study, we analyzed how ERK signaling networks can regulate cell proliferation and differentiation, depending on the distinct temporal activation patterns by use of systems biology approach. First, we tried to analyze the differentiation processes. We performed a discontinuous stimulation assay consisting of a first transient stimulation followed by an interval and then a second sustained stimulation and quantified the neurite extension level (Chung, J. et al, 2010). Consequently, we observed a timing-dependent action of NGF on cell differentiation, and discontinuous NGF stimulation similarly induced differentiation. The first stimulation did not ind … More uce neurite extension, whereas the second stimulation induced fast neurite extension ; therefore, the first stimulation is likely required as a prerequisite condition. These observations indicate that the action of NGF can be divided into two processes : an initial stimulation-driven latent process and a second stimulation-driven extension process. The latent process appears to require the activities of ERK and transcription, but not PI3K, whereas the extension-process requires the activities of ERK and PI3K, but not transcription. We screened the possible genes involved in the latent process, and identified 3 genes as a possible candidates. We developed a fully automatable assay technique, termed quantitative image cytometry, which integrates a quantitative immunostaining technique and a high precision image-processing algorithm for cell identification (Ozaki, Y. et al, 2010). With the aid of an automated sample preparation system, this device can quantify protein expression, phosphorylation and localization with subcellular resolution at one-minute intervals. We will investigate the signaling dynamics of the ERK pathway in PC12 cells, demonstrating using QIC. Less

  • Research Products

    (21 results)

All 2010 2009 2008 2007 Other

All Journal Article (3 results) Presentation (16 results) Book (1 results) Remarks (1 results)

  • [Journal Article] A quantitative image cytometry technique for time series or population analyses of signaling networks2010

    • Author(s)
      Ozaki Y, Uda S, Saito TH, Chung J, Kubota H, Kuroda S.
    • Journal Title

      PLoS ONE

      Pages: e9955

  • [Journal Article] Timing-dependent actions of NGF required for cell differentiation2010

    • Author(s)
      Chung J, Kubota H, Ozaki Y, Uda S, Kuroda S.
    • Journal Title

      PLoS ONE

      Pages: e9011

  • [Journal Article] Specific features of transient Ras and sustained Rapl activation2009

    • Author(s)
      Ozaki, Y., Uda, S., Kuroda, S.
    • Journal Title

      In Systems Biology, the Challenge of Complexity Springer

      Pages: 121-127

  • [Presentation] Temporal coding of ERK and AKT signaling pathway2010

    • Author(s)
      Shinya Kuroda
    • Organizer
      Shanghai, Invited
    • Place of Presentation
      Sino-Japan Workshop
    • Year and Date
      20100314-20100315
  • [Presentation] Temporal coding of ERK and Akt signaling pathway2010

    • Author(s)
      黒田真也
    • Organizer
      第13回国際細胞膜研究フォーラム
    • Place of Presentation
      招待講演、京都
    • Year and Date
      2010-01-27
  • [Presentation] Tsukuba, Invited Temporal coding of ERK and AKT signaling pathway2009

    • Author(s)
      Shinya Kuroda
    • Organizer
      International symposium on cellular signaling-principles and functions-
    • Place of Presentation
      Tsukuba, Invited
    • Year and Date
      20091218-20091219
  • [Presentation] Temporal coding of Akt signaling networks2009

    • Author(s)
      Shinva Kuroda, Kazuhiro Fujita, Yu Toyoshima
    • Organizer
      Dynamics of signal transduction and of gene-protein regulatory networks
    • Place of Presentation
      Ohio, USA Oral, Poster
    • Year and Date
      20091202-20091206
  • [Presentation] Systems analysis of ERK signaling networks using automated immunofluorescent cytometry2009

    • Author(s)
      Shines Kuroda, Yu-ichi Ozaki
    • Organizer
      Computational Cell Biology
    • Place of Presentation
      Cold Spring Harbor, NY, USA, Oral
    • Year and Date
      20090300
  • [Presentation] NGF-dependent differentiation requires two distinct processes ; ERK-and transcription- driven protentiation process and ERK-and P13K-driven neurtie-extension process2009

    • Author(s)
      Jaehoon Chung, Hiroyuki Kubota, Yu-ichi Ozaki, Shinsuke Uda. Shinva Kuroda
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      ポスター、横浜
    • Year and Date
      2009-12-12
  • [Presentation] High throughput quantification of single cellular signaling events by use of immunostaining and image cytometry2009

    • Author(s)
      Yu-ichi Ozaki, Shinsuke Uda, Takeshi Saito, Chung Jeahoon, Hiroyuki Kubota, Shinva Kuroda
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      招待講演、口頭、横浜
    • Year and Date
      2009-12-11
  • [Presentation] Low-pass filter characteristics of the Akt pathway decouple EGF receptor and downstream phosphorylation2009

    • Author(s)
      Fujita, K., Toyoshima, Y., Uda, S., Ozaki, Y., Kubota, H. Kuroda, S.
    • Organizer
      The 10th International Conference on Systems Biology
    • Place of Presentation
      CA, USA, Poster
    • Year and Date
      2009-08-30
  • [Presentation] システムズバイオロジー : 本質は複雑でなくシンプル!2009

    • Author(s)
      黒田真也
    • Organizer
      第61回日本細胞生物学会大会
    • Place of Presentation
      口頭・招待講演演、名古屋
    • Year and Date
      2009-06-02
  • [Presentation] ERK経路のシステム生物学2009

    • Author(s)
      黒田真也, 尾崎裕一
    • Organizer
      第9回日本蛋白質科学会年会
    • Place of Presentation
      口頭・招待講演、熊本
    • Year and Date
      2009-05-22
  • [Presentation] Systems biology of ERK signaling networks2008

    • Author(s)
      Shines Kuroda
    • Organizer
      Japan-Taiwan Young Researchers Conference on Computational and Systems Biology
    • Place of Presentation
      Taiwan
    • Year and Date
      20080300
  • [Presentation] Temporal coding of ERK signaling networks2008

    • Author(s)
      Shines Kuroda
    • Organizer
      FCSB2008 International Workshop on Future Challenges for Systems Biology
    • Place of Presentation
      Tokyo
    • Year and Date
      20080200
  • [Presentation] Temporal coding of ERK signaling network2008

    • Author(s)
      Shinya Kuroda
    • Organizer
      NIBB-EMBL-CRG Workshop on Systems Biology
    • Place of Presentation
      Barcelona
    • Year and Date
      20080000
  • [Presentation] Systems analysis of ERK signaling network using automated immunofluorescence method2008

    • Author(s)
      尾崎裕一, 黒田真也
    • Organizer
      第31回日本分子生物学会年会 第81回日本生化学会大会 合同大会 (BMB2008)
    • Place of Presentation
      口頭
    • Year and Date
      2008-12-10
  • [Presentation] 自動化免疫染色法を用いたERK経路のシステム解析2007

    • Author(s)
      尾崎裕一, 黒田真也
    • Organizer
      第30回日本分子生物学会年会, 第80回日本生化学会大会 合同大会
    • Place of Presentation
      ポスター
    • Year and Date
      2007-12-11
  • [Presentation] ERK経路のシステム生物学2007

    • Author(s)
      黒田真也, 尾崎裕一
    • Organizer
      第30回日本分子生物学会年会, 第80回日本生化学会大会 合同大会
    • Place of Presentation
      招待講演
    • Year and Date
      2007-12-11
  • [Book] 現代生物科学入門 第8巻2010

    • Author(s)
      システムバイオロジー
    • Publisher
      岩波書店
  • [Remarks]

    • URL

      www.kurodalab.org

URL: 

Published: 2011-06-18   Modified: 2016-04-21  

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