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2007 Fiscal Year Final Research Report Summary

The targetedproteomics for membrane protein and nuclear protein

Research Project

Project/Area Number 18310142
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Living organism molecular science
Research InstitutionThe University of Tokyo

Principal Investigator

HAMAKUBO Takao  The University of Tokyo, Research Center for Advanced Science and Technology, Professor (90198797)

Co-Investigator(Kenkyū-buntansha) SAKIHAMA Toshiko  The University of Tokyo, Research Center for AdvanoedScience and Technology, Specially Appointed Associate Professor (70187061)
MASUDA Kazuyuki  The University of Tokyo, Research Center for Advanced Science and Technology, Assistant Professor (20345151)
Project Period (FY) 2006 – 2007
Keywordsmonoclonal antibody / proteomics / magnetic beads / targeted nroteomics / nuclear receptor / GPCR / cardiovascular disease
Research Abstract

Transcription factors or membrane receptor proteins (e. g., the G protein-coupled receptor [GPCR]) are considered to precisely regulate physiological processes by forming complexes with a number of proteins. As the amounts of these proteins, which are important for cellular responses to stimuli, are very small, and purification is difficult, a dynamic analysis of their functions in vivo has not yet been undertaken. In this study, we have developed a method for the functional analysis of membrane proteins expressed and reconstituted on the baculoviruses (Sakihama T., J Biotechnol, 2008). Furthermore, we have developed a method to analyze the dynamism of protein-protein interactions for the endogenous proteins, by fixing the high affinity monoclonal antibodies obtained using the protein-expressing baculovirus (Saitoh R., et. al., JIM, 2007) to low noise magnetic beads, and performing a mass spectrometric analysis.
In other veins, a novel regulation pathway mediated by angiotensin was foun … More d by utilizing monoclonal antibodies of angiotensin type II receptor (AT2) and angiotensin receptor-interacting proteins (ATIPs), prepared using baculovirus. We also found that the WTAP (WT1 associated protein) is involved in the stability of cyclin A2 mRNA thereby regulates the cell cycle. We have reported in the meetings that it is possible to detect endogenous HNF4alpha, a nuclear receptor which is important for liver and pancreas formation, from one 10 cm dish cell sample, and to identify over one hundred associating proteins for HNF4alpha, by establishing a method for affinity purification mass spectrometry using magnetic beads and high-affinity antibodies. The sensitive identification of very small amounts of endogenous proteins makes it possible to analyze the physiological regulation dynamics. The method described above will be a powerful tool for protein modification or protein-protein interaction assay for proteins involved in the pathology of various diseases and pharmacologic actions. Less

  • Research Products

    (50 results)

All 2008 2007 2006 Other

All Journal Article (34 results) (of which Peer Reviewed: 17 results) Presentation (15 results) Remarks (1 results)

  • [Journal Article] Functional reconstitution of G protein-coupled receptor-mediated adenylyl cyclase activation by a baculoviral co-display system.2008

    • Author(s)
      Sakihama T., Masuda K., Sato T., Doi T., Kodama T., Hamakubo T.
    • Journal Title

      Journal of Biotechnol. (印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Expression of pentraxin 3 (PTX3) in humana therosclerotic lesions.2008

    • Author(s)
      Savchenko A, Hamakubo T, Kodama T, Naito M., et. al.
    • Journal Title

      J. Pathol. (印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Expression of androgen receptor through androgen-converting enzymes is associated with biological aggressiveness in prostate cancer2008

    • Author(s)
      Wako K, Hamakubo T, Kodama T, Naito M., et. al.
    • Journal Title

      J. Clin Pathol. (印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Human calpain 7/PalBH associates with a subset of ESCRT-III-relatedproteins in its N-terminal region and partly localizes to endocytic membranecompartments.2008

    • Author(s)
      Yorikawa C, Hamakubo T, Mochizuki Y, Iwanari H, Maki M ed al.
    • Journal Title

      J. Biochem. (印刷中)

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Human calpain 71PalBH associates with a subset of ESCRT-III-related proteins in its N-terminal region and partly localizes to endocytic membrane compartments2008

    • Author(s)
      Yorikawa C, Hamakubo T, Mochizuki Y, Iwanari H, Maki M., et. al.
    • Journal Title

      J Biochem. (in press)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Cooperative interaction between hepatocyte nuclear factor4alpha and GATA transcription factors regulates ATP-binding cassette sterol transporters ABCG5 and ABCG82008

    • Author(s)
      Sumi K, Hamakubo T, Kodama T, Sakai J., et. al.
    • Journal Title

      Mol Cell Biol 27(12)

      Pages: 4248-4360

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Antisense activity of 2',4'-BNA targeted to PPAR gamma in THP-1 and HCT116 cells.2007

    • Author(s)
      Tachibana K, Hamakubo T, Sakai J, Kodama T, Doi T., et. al.
    • Journal Title

      Nucleic Acids Symp Ser (Oxf). (51)

      Pages: 441-442

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Aldo-keto reductase family 1, member B10 in uterine carcinomas: a potential risk factor of recurrence after surgical therapy in cervical cancer.2007

    • Author(s)
      Yoshitake H, Hamakubo T, Kodama T, Araki Y., et. al.
    • Journal Title

      Int J. Gynecol Cancer Nov-Dec;17(6)

      Pages: 1300-1306

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Transcriptional activation by hypoxia ahd low-density lipoprotein loading in cultured vascular smooth muscle cells.2007

    • Author(s)
      Sugiyama A, Hamakubo T, Kodama T. et al.
    • Journal Title

      J. Atheroscler Thromb. J. Biochem. Oct;14(5)

      Pages: 226-234

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Lipopolysaccharide induced expression of pentraxin 3 in human neutrophils and monocyte-derived macrophages2007

    • Author(s)
      Imamura M, Hamakubo T, Kodama T, Naito M., et. al.
    • Journal Title

      Cell Immunol Aug;248(2)

      Pages: 86-94

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Alzheimer's disease:cholesterol, membrane rafts, isoprenoids and statins.2007

    • Author(s)
      Reid PC, Urano Y, Kodama T, Hamakubo T
    • Journal Title

      J. Cell Mol Med May-Jun;11(3)

      Pages: 383-392

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Cooperative interaction between hepatocyte nuclear factor 4 alpha and GATA transcription factors regulates ATP-binding cassette sterol transporters ABCG5 and ABCG8.2007

    • Author(s)
      Sumi K, Hamakubo T, Kodama T, Sakai J. et. al.
    • Journal Title

      Mol Cell Biol. Dec17

      Pages: 4248-4260

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Viral envelope protein gp64 transgenic mouse facilitates the generation of monoclonal antibodies against exogenous membrane proteins displayed on baculovirus2007

    • Author(s)
      Saitoh R, Ohizumi I, Kodama T, Tsuchiya M, Hamakubo T., et. al.
    • Journal Title

      J. Immunol Methods. Apr30;322(1-2)

      Pages: 104-17

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Expression of liver X receptor alpha in rat fetal tissues at different developmental stages.2007

    • Author(s)
      Sakamoto A, Hamakubo T, Sakai J, Kodama T, Naito M, et. al.
    • Journal Title

      J. Histochem Cytochem. Jun;55(6)

      Pages: 641-649

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Downregulated P1 promoter-driven hepatocyte nuclear factor-4alpha expression in human colorectal carcinoma is a new prognostic factor against liver metastasis.2007

    • Author(s)
      Oshima T, Hamakubo T, Kodama T, Naito M., et. al.
    • Journal Title

      Pathol Int. Feb;57(2)

      Pages: 82-90

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Three-dimensional structure of the gamma-secretase complex.2007

    • Author(s)
      Ogura T, Mio K, Hamakubo T, Iwatsubo T, Tomita T, Sato C., et. al.
    • Journal Title

      Biochem Biophys Res Commun. May5;343(2)

      Pages: 525-534

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Dysregulated expression of P1 and P2 promoter-driven hepatocyte nuclear factor-4alpha in the pathogenesis of human cancer.2007

    • Author(s)
      Tanaka T, Hamakubo T, Sakai J, Naito M, Kodama T, et. al.
    • Journal Title

      J. Pathol. Apr;208(5)

      Pages: 662-672

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Functional reconstitution of G protein-coupled receptor-mediated adenylyl cyclase activation by a baculoviral co-display system2007

    • Author(s)
      Sakihama T., Masuda K., Sato T., Doi T., Kodama T., Hamakubo T.
    • Journal Title

      J Biotechnol (in press)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Expression of pentraxin3 (PTX3) in human atherosclerotic lesions2007

    • Author(s)
      Savchenko A, Hamakubo T, Kodama T, Naito M., et. al.
    • Journal Title

      J Pathol (in press)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Expression of androgen receptor through androgen-converting enzymes is associated with biological aggressiveness in prostate cancer2007

    • Author(s)
      Wako K, Hamakubo T, Kodama T, Naito M., et. al.
    • Journal Title

      J Clin Pathol (in press)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Antisense activity of 2'',4''-BNA targeted to PPAR gamma in THP-1 and HCT116 cells2007

    • Author(s)
      Tachibana K, Hamakubo T, Sakai J, Kodama T, Doi T., et. al.
    • Journal Title

      Nucleic Acids Symp Ser (Oxf) 51

      Pages: 441-442

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Aldo-keto reductase family1, member B10 in uterine carcinomas : a potential risk factor of recurrence after surgical therapy in cervical cancer2007

    • Author(s)
      Yoshitake H, Hamakubo T, Kodama T, Araki Y., et. al.
    • Journal Title

      Int J Gynecol Cancer 17(6)

      Pages: 1300-1306

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Transcriptional activation by hypoxia and low-density lipoprotein loading in cultured vascular smooth muscle cells2007

    • Author(s)
      Sugiyama A, Hamakubo T, Kodama T., et. al.
    • Journal Title

      J Atheroscler Thromb 14(5)

      Pages: 226-234

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Lipopolysaccharide induced expression of pentraxin 3 in human neutrophils and monocyte-derived macrophages2007

    • Author(s)
      Imamura M, Hamakubo T, Kodama T, Uchiyama M, Naito M., et. al.
    • Journal Title

      Cell Immunol 248(2)

      Pages: 86-94

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Alzheimer''s disease : cholesterol, membrane rafts, isoprenoids and statins2007

    • Author(s)
      Reid PC, Urano Y, Kodama T, Hamakubo T.
    • Journal Title

      J Cell Mol Med 11(3)

      Pages: 383-392

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Viral envelope protein gp64 transgenic mouse facilitates the generation of monoclonal antibodies against exogenous membrane proteins displayed on baculovirus2007

    • Author(s)
      Saitoh R, Hamakubo T., et. al.
    • Journal Title

      Immunol Methods 322(1-2)

      Pages: 104-117

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Expression of liver X receptor alpha in rat fetal tissues at different developmental stages2007

    • Author(s)
      Sakamoto A, Hamakubo T, Sakai J, Kodama T, Naito M., et. al.
    • Journal Title

      J Histochem Cytochem 55(6)

      Pages: 641-649

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Downregulated P1 promoter-driven hepatocyte nuclear factor-4alpha expression in human colorectal carcinoma is a new prognostic factor against liver metastasis2007

    • Author(s)
      Oshima T, Hamakubo T, Kodama T, Naito M., et. al.
    • Journal Title

      Pathol Int. 57(2)

      Pages: 82-90

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Analysis of PPAR alpha function in human kidney cell line using siRNA.2006

    • Author(s)
      Tachibana K, Hamakubo T, Sakai J, Kodama T, Doi T., et. al.
    • Journal Title

      Nucleic Acids Symp Ser (Oxf) (50)

      Pages: 257-258

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Wilms' tumor 1-associating protein regulates G2/M transition through stabilization of cyclin A2 mRNA.2006

    • Author(s)
      Horiuchi K, Umetani M, Hamakubo T, Kodama T, et. al.
    • Journal Title

      Proc Natl Acad Sci USA Nov14;103(46)

      Pages: 17278-17283

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Analysis of PPAR alpha function in human kidney cell line using siRNA2006

    • Author(s)
      Tachibana K, Hamakubo T, Sakai J, Kodama T, Doi T., et. al.
    • Journal Title

      Nucleic Acids Symp Ser (Oxf) 50

      Pages: 257-258

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Wilms'' tumor 1-associating protein regulates G2/M transition through stabilization of cyclin A2 mRNA2006

    • Author(s)
      Horiuchi K, Hamakubo T, Kodama T., et. al.
    • Journal Title

      Proc Natl Acad Sci USA 103(46)

      Pages: 17278-17283

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Three-dimensional structure of the gamma-secretase complex2006

    • Author(s)
      Ogura T, Hamakubo T, Iwatsubo T, Tomita T, Sato C., et. al.
    • Journal Title

      Biochem Biophys Res Commun 343(2)

      Pages: 525-534

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Dysregulated expression of P1 and P2 promoter-driven hepatocyte nuclear factor-4alpha in the pathogenesis of human cancer2006

    • Author(s)
      Tanaka T, Hamakubo T, Sakai J, Naito M, Kodama T., et. al.
    • Journal Title

      J Pathol 208(5)

      Pages: 662-672

    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Functional proteomics of endogenous HNF4α complex revealed the heterodimerization of HNF4α and HNF4γ in HepG2 cells2008

    • Author(s)
      Kenji Daigo, Tatsuhiko Kodama, and Takao Hamakubo, et. al.
    • Organizer
      Keystone Symposia, Nuclear Receptors: Orphan Brothers
    • Place of Presentation
      Whistler Resort, Whistler, British Columbia
    • Year and Date
      2008-03-31
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Functional proteomics of endogenous HNF4a complex revealed the heterodimerization of HNF4a and HNF4y in HepG2 cells2008

    • Author(s)
      Kenji Daigo, Tatsuhiko Kodama, Takao Hamakubo, et. al.
    • Organizer
      Keystone Symposia, Nuclear Receptors : Orphan Brothers
    • Place of Presentation
      Whistler Resort, Whistler, British Columbia
    • Year and Date
      2008-03-31
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] リガンド結合依存型三量体Gタンパク質活性化とRGS相互作用のFRETによる検出2007

    • Author(s)
      増田一之、柴崎芳一、小笹 徹、児玉龍彦、浜窪隆雄
    • Organizer
      第30回日本分子生物学会第80回日本生化学会合同大会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-12-13
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Baculovirus Display系を用いた膜蛋白質相互作用検出法とその応用2007

    • Author(s)
      先浜俊子、佐藤敬人、北村俊雄、児玉龍彦、浜窪隆雄
    • Organizer
      第30回日本分子生物学会第80回日本生化学会合同大会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-12-13
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Detection of Ligand-induced G protein activation and RGS interaction by FRET2007

    • Author(s)
      Kazuyuki Masuda、Takao Hamakubo, et. al.
    • Organizer
      Biochemistry and Molecular Biology
    • Place of Presentation
      Yokohama
    • Year and Date
      2007-12-13
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Detection of ligand-recepter interaction between membrane proteins by Baculovirus Display system2007

    • Author(s)
      Toshiko Sakihama, Takao Hamakubo., et. al.
    • Organizer
      Biochemistry and Molecular Biology
    • Place of Presentation
      Yokohama
    • Year and Date
      2007-12-13
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] 高親和性抗体結合低非特異吸着磁性ビーズを用いた内在性HNF4α複合体のショットガンプロテオミクス解析2007

    • Author(s)
      太期健二, 川村猛, 片寄聡, 田中十志也, 児玉龍彦, 浜窪隆雄
    • Organizer
      第30回日本分子生物学会第80回日本生化学会合同大会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2007-12-12
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Shotgun proteomics analysis of endogenous Hepatocyte nuclear factor4 alpha complex using higt-affinity monoclonal antibody conjugated magnetic beads2007

    • Author(s)
      Kenji Daigo, Takao Hamakubo., et. al.
    • Organizer
      Biochemistry and Molecular Biology
    • Place of Presentation
      Yokohama
    • Year and Date
      2007-12-12
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] バキュロウイルス発現系の開発系と膜蛋白質特異抗体の作製技術2007

    • Author(s)
      浜窪隆雄
    • Organizer
      タンパク質生産・精製技術最前線セミナー
    • Place of Presentation
      横浜ランドマークタワー
    • Year and Date
      2007-12-10
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] The development and the original technique of the generation of monoclonal antibodies against exogenous membrane proteins displayed on baculovirus2007

    • Author(s)
      Takao Hamakubo
    • Organizer
      The forefront workshop about the protein industrials, the purification Techniques
    • Place of Presentation
      The Landmark Tower25F Yokohama
    • Year and Date
      2007-12-10
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] 抗体作製技術の現状と展望2007

    • Author(s)
      浜窪隆雄
    • Organizer
      第10回ヒューマンサイエンス総合研究ワークショップ
    • Place of Presentation
      国際研究交流会館
    • Year and Date
      2007-11-06
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] The present style and the prospect for the generation of antibodies2007

    • Author(s)
      Takao Hamakubo
    • Organizer
      10th the workshop for human science multidiscipline research
    • Place of Presentation
      National Cancer center
    • Year and Date
      2007-11-06
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] バキュロウイルスディスプレイ法を用いた高親和性抗体の作製とターゲテドプロテオミクスの応用2007

    • Author(s)
      浜窪隆雄
    • Organizer
      第4回千葉疾患プロテオミクス研究会
    • Place of Presentation
      千葉大学西千葉キャンパス
    • Year and Date
      2007-10-14
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] The generation of the high-affinity antibodies with displayed on baculovirus and the application to the targeted proteomics2007

    • Author(s)
      Takao Hamakubo
    • Organizer
      4th Clinical Proteomics in Chiba
    • Place of Presentation
      Chiba University
    • Year and Date
      2007-10-14
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] High-resolution targeted proteomics of endogenousnuclear receptor comprex using high-quality immunomagnetic beads2007

    • Author(s)
      Kenji Daigo, Tatsuhiko Kodama, Takao Hamakubo, et. al.
    • Organizer
      Cold Spring Harbor Laboratory Mechanisms of Eukaryotic Transcription meeting
    • Place of Presentation
      Cold Spring Harbor, NY
    • Year and Date
      2007-08-31
    • Description
      「研究成果報告書概要(和文)」より
  • [Remarks] 「研究成果報告書概要(和文)」より

    • URL

      http://www.lsbm.org/

URL: 

Published: 2010-02-04  

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