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2009 Fiscal Year Final Research Report

Toward efficient production of artificial RNAs with biological activities

Research Project

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Project/Area Number 18380056
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied microbiology
Research InstitutionToyohashi University of Technology

Principal Investigator

KIKUCHI Yo  Toyohashi University of Technology, 工学部, 教授 (40273320)

Co-Investigator(Kenkyū-buntansha) TANAKA Terumichi  豊橋技術大学, 工学部, 准教授 (30273337)
UMEKAGE So  豊橋技術大学, 工学部, 助教 (30419436)
Project Period (FY) 2006 – 2009
KeywordsRNAアプタマー / 菌体外核酸 / 核酸ドラッグ / 機能性RNA / 光合成細菌 / 発酵生産
Research Abstract

RNAs have emerged as major players in current biology. Natural micro RNAs and artificial small interfering RNAs (siRNAs), double-stranded RNAs (dsRNAs) or ribozymes function as regulators of gene expressions. In addition, an RNA aptamer, which is experimentally selected from randomized RNA pools, is a biologically functional molecule of specific binding ability to a target molecule. These RNAs are potential candidates for RNA therapeutics. In this context, efficient methods for preparation of homogeneous RNA molecules are highly required. At present, such RNAs have been prepared by in vitro transcription or chemical synthesis. However, they are costly and labour intensive and not suitable for preparation especially in large quantities. For large scale production of RNAs, in vivo production using microorganisms is thought to be the most suitable method. In this study, a new method for in vivo production of artificial RNAs using the marine phototrophic bacterium Rhodovulum sulfidophilum has been proposed. By this method, the product RNA is produced not only inside the cells but also in the culture medium, because this organism produces extracellular nucleic acids in nature. This is the first demonstration of extracellular production of a functional artificial RNA in vivo.

  • Research Products

    (21 results)

All 2010 2009 2008 2007 2006 Other

All Journal Article (8 results) (of which Peer Reviewed: 7 results) Presentation (8 results) Book (2 results) Remarks (1 results) Patent(Industrial Property Rights) (2 results)

  • [Journal Article] Extracellular production of an RNA aptamer by ribonuclease-free marine bacteria harboring engineered plasmids: a proposal for industrial RNA drug production.2010

    • Author(s)
      Suzuki, H., Ando, T., Umekage, S., Tanaka, T., Kikuchi, Y.
    • Journal Title

      Appl. Environ. Microbiol. 76

      Pages: 786-793

    • Peer Reviewed
  • [Journal Article] Characterization of extracellular DNA production and flocculation of the marine photosynthetic bacterium Rhodovulum sulfidophilum.2009

    • Author(s)
      Suzuki, H., Daimon, M., Awano, T., Umekage, S., Tanaka, T., Kikuchi, Y.
    • Journal Title

      Applied Microbiol. Biotech. 84

      Pages: 349-356

    • Peer Reviewed
  • [Journal Article] In vivo circular RNA production using a constitutive promoter for high-level expression.2009

    • Author(s)
      Umekage, S., Kikuchi, Y.
    • Journal Title

      Journal of Bioscience and Bioengineering 108

      Pages: 354-356

    • Peer Reviewed
  • [Journal Article] In vitro and in vivo production and purification of circular RNA aptamer.2009

    • Author(s)
      Umekage, S., Kikuchi, Y.
    • Journal Title

      Journal of Biotechnology 139

      Pages: 265-272

    • Peer Reviewed
  • [Journal Article] Analysis on substrate specificity of Escherichia coli ribonuclease P using shape variants of pre-tRNA.2009

    • Author(s)
      Suwa, S., Nagai, Y., Fujimoto, A., Kikuchi, Y., Tanaka, T.
    • Journal Title

      J. Biochem. 145(2)

      Pages: 151-160

    • Peer Reviewed
  • [Journal Article] Extracellular tRNAs of the marine photosynthetic bacterium Rhodovulum sulfidophilum are not aminoacylated.2009

    • Author(s)
      Suzuki, H., Umekage, S., Tanaka, T., Kikuchi, Y.
    • Journal Title

      Biosci. Biotechnol. Biochem. 73(2)

      Pages: 425-427

    • Peer Reviewed
  • [Journal Article] Production of circular streptavidin RNA aptamer in vivo.2007

    • Author(s)
      Umekage, S., Kikuchi, Y.
    • Journal Title

      Nucleic Acids Symposium Series No.51

      Pages: 391-392

  • [Journal Article] Characterization of extracellular RNAs produced by the marine photosynthetic bacterium R hodovulum sulfidophilum.2006

    • Author(s)
      Ando, T., Suzuki, H., Nishimura, S., Tanaka, T., Hiraishi, A., Kikuchi, Y.
    • Journal Title

      J. Biochem. 139(4)

      Pages: 805-811

    • Peer Reviewed
  • [Presentation] 海洋性光合成細菌を用いた機能性RNAの効率的発酵生産-生成物の末端構造の違いによる生産性への影響2009

    • Author(s)
      藤田能亘, 鈴木宏道, 梅影創, 田中照通, 菊池洋
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2009-12-12
  • [Presentation] 海洋性光合成細菌を用いた機能性RNAの効率的発酵生産-rrnプロモーターによる大量生産2009

    • Author(s)
      鈴木宏道, 大門正英, 梅影創, 田中照通, 菊池洋
    • Organizer
      第82回日本生化学会大会
    • Place of Presentation
      神戸
    • Year and Date
      2009-10-24
  • [Presentation] 海洋性光合成細菌を用いた機能性RNAの効率的発酵生産-生成RNAの安定化法2009

    • Author(s)
      藤田能亘, 鈴木宏道, 梅影創, 田中照通, 菊池洋
    • Organizer
      日本農芸化学会2009年度大会
    • Place of Presentation
      福岡
    • Year and Date
      2009-03-28
  • [Presentation] tRNAスキャホールド法を用いた環状型RNAの発酵生産2008

    • Author(s)
      梅影創, 菊池洋
    • Organizer
      第31回日本分子生物学会年会・第81回日本生化学会大会合同大会
    • Place of Presentation
      神戸
    • Year and Date
      2008-12-12
  • [Presentation] 海洋性光合成細菌Rhodovulum sulfidophilumが生産する菌体外DNAの挙動と解析2008

    • Author(s)
      鈴木宏道, 粟野智幸, 大門正英, 梅影創, 田中照通, 菊池洋
    • Organizer
      第31回日本分子生物学会年会・第81回日本生化学会大会合同大会
    • Place of Presentation
      神戸
    • Year and Date
      2008-12-10
  • [Presentation] Production and purification of circular RNA aptamer in vitro and in Escherichia coli2008

    • Author(s)
      S. Umekage, Y. Kikuchi
    • Organizer
      20th FAOBMB Taipei Conference-Frontier in Life Sciences
    • Place of Presentation
      Taipei, Taiwan
    • Year and Date
      2008-10-24
  • [Presentation] 機能性RNAの発酵生産2008

    • Author(s)
      鈴木宏道, 安藤智朗, 梅影創, 田中照通, 平石明, 菊池洋
    • Organizer
      第10回日本RNA学会年会
    • Place of Presentation
      札幌
    • Year and Date
      2008-07-23
  • [Presentation] Extracellular tRNAs of the marine photosynthetic bacterium Rhodovulum sulfidophilum: structural analyses2007

    • Author(s)
      Hiromichi Suzuki, So Umekage, Terumichi Tanaka, Akira Hiraishi, Yo Kikuchi
    • Organizer
      22nd tRNA workshop
    • Place of Presentation
      Uppsala, Sweden
    • Year and Date
      2007-11-03
  • [Book] Extracellular Nucleic Acids (a volume of Nucleic Acids and Molecular Biology)2010

    • Author(s)
      Yo Kikuchi, Elena Y. Rykova (Eds)
    • Total Pages
      300
    • Publisher
      Springer-Verlag Heidelberg(in press)
  • [Book] ノーベル賞の生命科学入門RNAが拓く新世界2009

    • Author(s)
      菊池洋(編)
    • Total Pages
      180
    • Publisher
      講談社サイエンティフィク
  • [Remarks] 新聞記事等「海洋微生物で機能性RNAを発酵生産する手法」(鈴木宏道、菊池洋)、日経BTJジャーナル、No.032、2008. 8月号、6ページ

  • [Patent(Industrial Property Rights)] RNA製造方法及びプロモーター2008

    • Inventor(s)
      菊池洋, 田中照通, 梅影創, 鈴木宏道
    • Industrial Property Rights Holder
      豊橋技術科学大学・(株)三菱化学メディエンス
    • Industrial Property Number
      国際特許出願・PCT/JP2008/070749号
    • Filing Date
      2008-11-27
  • [Patent(Industrial Property Rights)] RNA製造方法2007

    • Inventor(s)
      菊池洋, 田中照通, 梅影創, 鈴木宏道
    • Industrial Property Rights Holder
      豊橋技術科学大学・(株)三菱化学メディエンス
    • Industrial Property Number
      国内特許出願・特願2007-295188号
    • Filing Date
      2007-11-14

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Published: 2011-06-18   Modified: 2016-04-21  

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