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2007 Fiscal Year Final Research Report Summary

Functional modification of dehydrogenaws by the combination of evolutionary molecular engineering and molecular dynamics cal calculation

Research Project

Project/Area Number 18580093
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied biochemistry
Research InstitutionShimane University

Principal Investigator

SAWA Yoshihiro  Shimane University, Faculty of Life and Environmental Science, Professor (70127489)

Project Period (FY) 2006 – 2007
Keywordsglutamate dehydrogenase / aspartate dehydrogenase / malate dehydrogenase / MD calculation / evolutionary molecular engineering / MOE
Research Abstract

Recently we have reported that the mutants, G82K and M101S of roc G glutamate dehydrogenase from Bacillus subtilis (Bs-GluDH) , were specific for oxaloacetate with Kcat values 3.45 and 5.68 s^<-1>, which were 265 and 473 folds higher than those for 2-oxoglutarate, respectively. Using recently accomplished NAB-dependent thermostable single mutant GluDH Q144R, as a template, a series of double mutant enzymes was constructed in the effort to change the substrate specificity from 2-oxoglutarate to oxaloacetate. In the reductive amination reaction, among the double mutant GluDHs Q144R/G82K and Q144R/M101S showed higher; preferences for oxaloacetate producing aspartate. The Kcat values of Q144R/G82K and Q144R/M101S were 199 and 2.14 s^<-1> respectively for oxaloacetate, and 5.73 and 2.69 s^<-1> respectively for pyruvate.
The malate dehydrogenases (MDH) have been cloned and characterized from Escherichia coli, Bacillus subtilis and Nostoc sp.PCC7120. The EcMDH was the only dehydrogenase which … More showed slightly L-aspartate deamination activity The comparison of biochemical parameters between EcMDH and archeal AspDH (AfAspDH) were analyzed. The Inc value of EcMDH for L-Asp oxidative deamination was higher than that of AfAspDH at 37-50℃, while Km value was also much higher than that of AfAspDH. The Km value of AfAspDH for oxaloacetate (OAA) changed depending on coexistent ammonium concentrations. lb improve AspDH activity of EcMDH, new mutants were tried to be designed by using MOE MD calculation. Various EcMDH loop mutants (N119S, N119A, A80P, P83V, G84V, D86G, R87G, S222G, V213F, V214F, E215D, E215R) were constructed to have a strong AspDH activity. Mutants E215D and E215R showed higher k, values for L-Asp deamination than wild type although Km value was also much high than wild type. However, these two mutants showed no reductive amination activity for OAA. It is necessary to apply the molecular evolutionary engineering techniques for improving the aspartate dehydrogenase activity of EcMDH. Less

  • Research Products

    (35 results)

All 2007 2006

All Journal Article (6 results) (of which Peer Reviewed: 3 results) Presentation (28 results) Book (1 results)

  • [Journal Article] Temperature-dependent stomatal movement in tulip petals controls water transpiration during flower opening and closing.2007

    • Author(s)
      A.K.Y. Azad
    • Journal Title

      Annals of Applied Biology 150

      Pages: 81

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Identification of critical structural determinants responsible for octopamine binding to the alpha-adrenergic-like Bombyx mori octopamine receptor.2007

    • Author(s)
      J. Huang
    • Journal Title

      Biochemistry 46

      Pages: 5896

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Temperature-dependent stomatal movement in tulip petals controls water transpiration during flower opening and closing2007

    • Author(s)
      A.K.Y., Azad, Y., Sawa, T., Ishikawa, H., Shibata
    • Journal Title

      Annals of Applied Biology 150

      Pages: 81-87

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Identification of critical structural determinants responsible for octopamine binding to the alpha-adrenergic-like Bombyx mori octopamine receptor2007

    • Author(s)
      J., Huang, T., Hamasaki, F., Ozoe, K., Enomoto, H., Kataoka, Y., Sawa, A., Hirota, Y., Ozoe
    • Journal Title

      Biochemistry 46

      Pages: 5896-903

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Purification and characterization of protein phosphatase 2A from petals of Tulipa gesnerina.2006

    • Author(s)
      A.K.Y. Azad
    • Journal Title

      Journal of Biochemistry and Molecular Biology 39

      Pages: 671

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Purification and characterization of protein phosphatase 2A from petals of Tu.Spa gesnerina2006

    • Author(s)
      A.K.Y., Azad, Y., Sawa, T., Ishikawa, H., SHIBATA
    • Journal Title

      Journal of. Biochemistry and Molecular Biology 39

      Pages: 671-676

    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] アスパラギン酸脱水素酵素及びリンゴ酸脱水素酵素共役反応系によるL-アスパラギン酸合成2007

    • Author(s)
      川上 矩加
    • Organizer
      第59回日本生物工学会大会
    • Place of Presentation
      広島県
    • Year and Date
      2007-09-25
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] L-Aspartate production by aspartate dehydrogenase and malate dehydrogenase2007

    • Author(s)
      N., Kawakami
    • Organizer
      The 59th Annual Meeting of the Society for Biotechnology, Japan
    • Place of Presentation
      Hiroshima
    • Year and Date
      2007-09-25
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Catalytic conversion of malate dehydrogenase to aspartate dehydrogenase No.22007

    • Author(s)
      Yinxia Li
    • Organizer
      日本農芸化学会中四国・西日本支部合同大会
    • Place of Presentation
      山口県
    • Year and Date
      2007-09-15
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Catalytic conversion of malate dehydrogenase to aspartate dehydrogenase No.22007

    • Author(s)
      Yinxia, Li
    • Organizer
      The Joint Annual Meeting for the Chu-Sikoku and the Nishinihon of JSBBA
    • Place of Presentation
      Yamaguchi
    • Year and Date
      2007-09-15
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] 大腸菌由来リンゴ酸脱水素酵素の触媒性変換2007

    • Author(s)
      川上 矩加
    • Organizer
      日本ビタミン学会第59回大会
    • Place of Presentation
      長崎県
    • Year and Date
      2007-05-25
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Catalytic conversion of E. coli malata dehydrogenase2007

    • Author(s)
      N., Kawakami
    • Organizer
      59th Annual Meeting of the Vitamin Society of Japan
    • Place of Presentation
      Nagasaki
    • Year and Date
      2007-05-25
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Catalytic conversion of malate dehydrogenase to aspartate dehydrogenase2007

    • Author(s)
      Yinxia Li
    • Organizer
      第49回日本生化学会中国・四国支部例会
    • Place of Presentation
      高知県
    • Year and Date
      2007-05-19
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Catalytic conversion of malate dehydrogenase to aspartate dehydrogenase2007

    • Author(s)
      Yinxia, Li
    • Organizer
      The 48th Annual Meeting for the Chugoku-Sikoku Branch of the JBS
    • Place of Presentation
      Kochi
    • Year and Date
      2007-05-19
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Conversion of a labile glutamate dehydrogenase into stable aspartate dehydro-genases by site directed mutagenesis2007

    • Author(s)
      Yinxia Li
    • Organizer
      2007年度日本農芸化学会大会
    • Place of Presentation
      東京
    • Year and Date
      2007-03-25
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Conversion of a labile glutamate dehydrogenase into stable aspartate dehydrogenases by site directed mutagenesis2007

    • Author(s)
      Yinxia, Li
    • Organizer
      Annual Meeting of JSBBA 2007
    • Place of Presentation
      Tokyo
    • Year and Date
      2007-03-25
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Cloning and functional analysis of plasma membrane aquaporins subfamilies of tulip petal2006

    • Author(s)
      M.A.K. Azad
    • Organizer
      Joint annual meeting of the American Society of Plant Biologists and the Canadian Society of Plant Biologists
    • Place of Presentation
      Boston, MA, USA
    • Year and Date
      2006-08-07
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Cloning and functional analysis of plasma membrane aquaporins subfamilies of tulip petal2006

    • Author(s)
      M.A.K., Azad
    • Organizer
      Annual meeting of the American Society of Plant Biologists
    • Place of Presentation
      MA, USA
    • Year and Date
      2006-08-07
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Reversible phosphorylation of plasma membrane aquaporin regulates temperature-dependent oscillation of tulip petals.2006

    • Author(s)
      M.A.K. Azad
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology and 11th FAOBMB Congress
    • Place of Presentation
      Kyoto
    • Year and Date
      2006-06-21
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Reversible phosphorylation of plasma membrane aquaporin regulates temperature- dependent oscillation of tulip petals2006

    • Author(s)
      M.A.K., Azad
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology
    • Place of Presentation
      Kyoto
    • Year and Date
      2006-06-21
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Catalytic mechanism of alanine dehydrogenase from cyanobacterium Phrmidium lapideum.2006

    • Author(s)
      H. Ashida
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology and 11th FAOBMB Congress
    • Place of Presentation
      Kyoto
    • Year and Date
      2006-06-18
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Functional analysis of glutamine synthetase adenylyltransferase from Escherichiacoli2006

    • Author(s)
      M. Ishida
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology and 11th FAOBMB Congress
    • Place of Presentation
      Kyoto
    • Year and Date
      2006-06-18
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Catalytic mechanism of alanine dehydrogenase from cyanobacterium Phrmidium lapideum2006

    • Author(s)
      H., Ashida
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology
    • Place of Presentation
      Kyoto
    • Year and Date
      2006-06-18
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Functional analysis of glutamine synthetase adenylyltransferase from Escherichia coli2006

    • Author(s)
      M., Ishida
    • Organizer
      20th IUBMB International Congress of Biochemistry and Molecular Biology
    • Place of Presentation
      Kyoto
    • Year and Date
      2006-06-18
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] 2-ヒドロキシ酸脱水素酵素とアミノ酸脱水素酵素の触媒反応性相互変換2006

    • Author(s)
      和田 剛
    • Organizer
      日本ビタミン学会第58回大会
    • Place of Presentation
      徳島県
    • Year and Date
      2006-05-28
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Catalytic inter-conversion between 2-hydorxy-acid dehydrogenase and amino-acid dehydrogenase2006

    • Author(s)
      T., Wada
    • Organizer
      The 58th Annual Meeting of the Vitamin Society of Japan
    • Place of Presentation
      Tokushima
    • Year and Date
      2006-05-28
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Tulip plasma membrane intrinsic proteins: Cloning and functional analysis2006

    • Author(s)
      M.A.K. Azad
    • Organizer
      第47回日本生化学会中国・四国支部例会
    • Place of Presentation
      島根県
    • Year and Date
      2006-05-13
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Tulip plasma membrane intrinsic proteins : Cloning and functional analysis2006

    • Author(s)
      M.A.K., Azad
    • Organizer
      The 47th Annual Meeting for the Chugoku-Sikoku Branch of the JBS
    • Place of Presentation
      Shimane, Japan
    • Year and Date
      2006-05-13
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] ラン藻Synechocystis sp. PCC6803におけるグルタチオン生合成酵素遺伝子の転写調節2006

    • Author(s)
      芦田裕之
    • Organizer
      第47回日本生化学会中国・四国支部例会
    • Place of Presentation
      島根県
    • Year and Date
      2006-05-12
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] バクテリア由来リンゴ酸脱水素酵素のアミノ酸脱水素活性2006

    • Author(s)
      和田 剛
    • Organizer
      第47回日本生化学会中国・四国支部例会
    • Place of Presentation
      島根県
    • Year and Date
      2006-05-12
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] グルタミン合成酵素アデニリルタランスフェラーゼの構造と機能2006

    • Author(s)
      西藤 拓
    • Organizer
      第47回日本生化学会中国・四国支部例会
    • Place of Presentation
      島根県
    • Year and Date
      2006-05-12
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Gene expression for glutathione biosynthetic enzymes in Synechocystis sp. PCC68032006

    • Author(s)
      H., Asbida
    • Organizer
      The 47th Annual Meeting for the Chugoku-Sikoku. Branch of the JBS
    • Place of Presentation
      Shimane
    • Year and Date
      2006-05-12
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Side reaction of bacterial malate dehydrogenase2006

    • Author(s)
      T., Wada
    • Organizer
      The 47th Annual Meeting for the Chugoku-Sikoku Branch of the JBS
    • Place of Presentation
      Shimane
    • Year and Date
      2006-05-12
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Structure and function of glutamine synthetase adenylyltransferase2006

    • Author(s)
      T., Nishifuji
    • Organizer
      The 47th Annual Meeting for the Chugoku-Sikoku Branch of the JBS
    • Place of Presentation
      Shimane
    • Year and Date
      2006-05-12
    • Description
      「研究成果報告書概要(欧文)」より
  • [Book] 光合成微生物の機能と応用有効微生物・水生微生物としての光合成微生物2006

    • Author(s)
      澤 嘉弘
    • Total Pages
      6
    • Publisher
      シーエムシー出版
    • Description
      「研究成果報告書概要(和文)」より

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Published: 2010-02-04  

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