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2010 Fiscal Year Final Research Report

Molecular Mechanism and Diversity of Autophagy

Research Project

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Project/Area Number 19002015
Research Category

Grant-in-Aid for Specially Promoted Research

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionTokyo Institute of Technology (2009-2011)
National Institute for Basic Biology (2007-2008)

Principal Investigator

OHSUMI Yoshinori  東京工業大学, フロンティア研究機構, 特任教授 (30114416)

Co-Investigator(Renkei-kenkyūsha) NAKATOGAWA Hitoshi  東京工業大学, フロンティア研究機構, 特任准教授 (90414010)
SUZUKI Kuninori  東京工業大学, フロンティア研究機構, 特任助教 (20373194)
Project Period (FY) 2007 – 2010
Keywordsオートファジー / ATG / タンパク質分解 / ユピキチン様タンパク質 / 膜動態
Research Abstract

Atg17, Atg29 and Atg31 form a stable ternary complex. Upon starvation Atg1-Atg13 joins to the complex and acts as a scaffold complex for the PAS. Other Atg proteins sequentially join to the PAS in a hierarchical manner. Using in vitro systems, we elucidated functions of the products of ubiquitin-like conjugation reactions, Atg8-PE and Atg12-Atg5. We studied selective degradation of mitochondria and identified an essential receptor, Atg32, which localizes on the mitochondrial outer membrane. Crystal structures of the most Atg proteins involved in the conjugation systems were determined.

  • Research Products

    (45 results)

All 2011 2010 2009 2008 2007 Other

All Journal Article (24 results) Presentation (20 results) Remarks (1 results)

  • [Journal Article] Selective autophagy regulates insertional mutagenesis by the Ty1 retrotransposon in Saccharomyces cerevisiae2011

    • Author(s)
      Suzuki K, Kondo C, Morimoto M, Ohsumi Y.
    • Journal Title

      Dev. Cell

      Volume: 21 Pages: 358-365

  • [Journal Article] Starvation induced cell death in autophagy-defective yeast mutants is caused by mitochondria dysfunction2011

    • Author(s)
      Suzuki SW, Onodera J, Ohsumi Y.
    • Journal Title

      PLoS ONE

      Volume: 6

  • [Journal Article] Autophagy-related protein(Atg) 8-family interacting motif in Atg3 mediates the Atg3-Atg8 interaction and is crucial for the cytoplasm-to-vacuole targeting pathway2011

    • Author(s)
      Yamaguchi M, Noda NN, Nakatogawa H, Kumeta H, Ohsumi Y, Inagaki F.
    • Journal Title

      J. Biol. Chem.

      Volume: 285 Pages: 29599-29607

  • [Journal Article] Selective transport of alpha-mannosidase by autophagic pathways : structural basis for cargo recognition by ATG19 and ATG342010

    • Author(s)
      Watanabe Y, Noda NN, Kumeta H, Suzuki K, Ohsumi Y, Inagaki F.
    • Journal Title

      J. Biol. Chem.

      Volume: 285 Pages: 30026-30033

  • [Journal Article] Selective transport of alpha-mannosidase by autophagic pathways : identification of a novel receptor2010

    • Author(s)
      Suzuki K, Kondo C, Morimoto M, Ohsumi Y.
    • Journal Title

      J. Biol. Chem.

      Volume: 285 Pages: 30019-30025

  • [Journal Article] To rdirectly controls the Atg1 kinase complex to regulate autophagy2010

    • Author(s)
      Kamada Y, Yoshino K, Kondo C, Kawamata T, Oshiro N, Yonezawa K, Ohsumi Y.
    • Journal Title

      Mol. Cell Biol

      Volume: 30 Pages: 1049-1058

  • [Journal Article] The dimeric coiled-coil structure of Saccharomyces cerevisiae Atg16 and its functional significance in autophagy2009

    • Author(s)
      Fujioka Y, Noda NN, Nakatogawa H, Ohsumi Y, Inagaki F.
    • Journal Title

      J. Biol. Chem.

      Volume: 285 Pages: 1508-1515

  • [Journal Article] Characterization of the Atg17-Atg29-Atg31 complex specifically required for starvation-induced autophagy in Saccharomyces cerevisiae2009

    • Author(s)
      Kabeya Y, Noda NN, Fujioka Y, Suzuki K, Inagaki F, Ohsumi Y.
    • Journal Title

      Biochem. Biophys. Res. Comm

      Volume: 389 Pages: 612-615

  • [Journal Article] Autophagy negatively regulates cell death by controlling NPR1-dependent salicylic acid signaling during senescence and the innate immune response in Arabidopsis2009

    • Author(s)
      Yoshimoto K, Jikumaru Y, Kamiya Y, Kusano M, Consonni C, Panstruga R, Ohsumi Y, Shirasu K.
    • Journal Title

      Plant Cell

      Volume: 21 Pages: 2914-2927

  • [Journal Article] Mitochondria-anchored receptor Atg32 mediates degradation of mitochondria via selective autophagy2009

    • Author(s)
      Okamoto K, Kondo-Okamoto N, and Ohsumi Y.
    • Journal Title

      Dev. Cell

      Volume: 17 Pages: 87-97

  • [Journal Article] The structure of Atg4B-LC3 complex reveals the mechanism of LC3-processing and delipidation during autophagy2009

    • Author(s)
      Satoo K, Noda NN, Kumeta H, Fujioka Y, Mizushima N, Ohsumi Y, Inagaki F.
    • Journal Title

      EMBO J.

      Volume: 28 Pages: 1341-1350

  • [Journal Article] The amino-terminal region of Atg3 is essential for association with phosphatidylethanolamine in Atg8 lipidation2009

    • Author(s)
      Hanada T, Satomi Y, Takao T, Ohsumi Y.
    • Journal Title

      FEBS Lett.

      Volume: 583 Pages: 1078-1083

  • [Journal Article] Atg17 recruits Atg9 to organize the pre-autophagosomal structure2009

    • Author(s)
      Sekito T, Kawamata T, Ichikawa R, Suzuki K, Ohsumi Y.
    • Journal Title

      Genes Cells

      Volume: 14 Pages: 525-538

  • [Journal Article] Autophagy plays a role in chloroplast degradation during senescence in individually darkened leaves2009

    • Author(s)
      Wada S, Ishida H, Izumi M, Yoshimoto K, Ohsumi Y, Mae T, Makino A.
    • Journal Title

      Plant Physiol.

      Volume: 149 Pages: 885-893

  • [Journal Article] Lap3 is a selective target of autophagy in yeast, Saccharomyces cerevisiae2009

    • Author(s)
      Kageyama T, Suzuki K, Ohsumi Y.
    • Journal Title

      Biochem. Biophys. Res. Comm.

      Volume: 378 Pages: 551-557

  • [Journal Article] Structural basis of target recognition by Atg8/LC3 during selective autophagy2008

    • Author(s)
      Noda NN, Kumeta H, Nakatogawa H, Satoo K, Adachi W, Ishii J, Fujioka Y, Ohsumi Y, Inagaki F.
    • Journal Title

      Genes Cells

      Volume: 12 Pages: 1211-1218

  • [Journal Article] Transport of phosphatidylinositol 3-phosphate into the vacuole via autophagic membranes in S. cerevisiae2008

    • Author(s)
      Obara K, Noda T, Niimi K, Ohsumi Y.
    • Journal Title

      Genes Cells

      Volume: 13 Pages: 537-547

  • [Journal Article] Physiologicl pH and acidic phospholipids contribute to substrate specificity in lipidation of Atg82008

    • Author(s)
      Oh-oka K, Nakatogawa H, Ohsumi Y
    • Journal Title

      Biol. Chem

      Volume: 283 Pages: 21847-21852

  • [Journal Article] The Atg18-Atg2 complex is recruited to autophagic membranes via PtdIns(3) P and exerts an essential function2008

    • Author(s)
      Obara K, Sekito T, Niimi K, Ohsumi Y.
    • Journal Title

      Biol. Chem.

      Volume: 283 Pages: 23972-23980

  • [Journal Article] Organization of the pre-autophagosomal structure responsible for autophagosome formation2008

    • Author(s)
      Kawamata T, Kamada Y, Kabeya Y, Sekito T, Ohsumi Y.
    • Journal Title

      Mol. Biol. Cell

      Volume: 19 Pages: 2039-2050

  • [Journal Article] In vitro reconstitution of plant ATG8 and ATG12 conjugation systems essential for autophagy2008

    • Author(s)
      Fujioka Y, Noda NN, Fujii K, Yoshimoto K, Ohsumi Y, Inagaki F.
    • Journal Title

      J. Biol. Chem.

      Volume: 283 Pages: 1921-1928

  • [Journal Article] The Atg12-Atg5 conjugate has a novel E3-like activity for protein lipidation in autophagy2007

    • Author(s)
      Hanada T, Noda NN, Satomi Y, Ichimura Y, Fujioka Y, Takao T, Inagaki F, Ohsumi Y.
    • Journal Title

      J. Biol. Chem.

      Pages: 37298-27302

  • [Journal Article] a ubiquitin-like protein required for autophagosome formation, mediates membrane tethering and hemifusion2007

    • Author(s)
      Nakatogawa, H., Ichimura, Y., and Ohsumi Y.
    • Journal Title

      Cell

      Volume: 130 Pages: 165-178

  • [Journal Article] Cis1/Atg31 is required for autophagosome formation in Saccharomyces cerevisiae2007

    • Author(s)
      Kabeya Y, Kawamata T, Suzuki K, and Ohsumi Y.
    • Journal Title

      Biochem. Biophys. Res. Comm.

      Volume: 356 Pages: 405-410

  • [Presentation] Autophagy in Yeast : Looking Back onthe Past Two Decades and Future Perspective2011

    • Organizer
      Keystone Meeting
    • Place of Presentation
      Whistler, Canada
    • Year and Date
      20110327-0401
  • [Presentation] Two Ubiquitin-Like Conjugation Reactions Essential for Autophagy2010

    • Organizer
      CSHL(Cold Spring Harbor Laboratory Meeting)
    • Place of Presentation
      The Banbury Center, USA
    • Year and Date
      20101114-17
  • [Presentation] Sino-Japan Symposium on Autophagy2010

    • Organizer
      Autophagy in Yeast
    • Place of Presentation
      Shanxi Normal University, China
    • Year and Date
      20101015-17
  • [Presentation] Molecular dissection of membrane dynamics in autophagosome formation2010

    • Organizer
      The 3rd International Symposium on Protein Community
    • Place of Presentation
      Nara
    • Year and Date
      20100913-16
  • [Presentation] Molecular machinery and physiological roles of autophagy in Yeast2010

    • Organizer
      Swiss Yeast Meeting
    • Place of Presentation
      Swiss
    • Year and Date
      20100905-08
  • [Presentation] Membrane dynamic during autophagy in yeast2010

    • Organizer
      Naito Conference
    • Place of Presentation
      Sapporo
    • Year and Date
      20100629-0702
  • [Presentation] Lessons from yeast on the molecular machinery of autophagy2010

    • Organizer
      Gordon Research Conference
    • Place of Presentation
      Ilcicco, Italy
    • Year and Date
      20100425-30
  • [Presentation] Molecular machinery for autophagosome formation2010

    • Organizer
      Keystone Meeting
    • Place of Presentation
      Snowbird, USA
    • Year and Date
      20100109-16
  • [Presentation] Lessons from yeast on the molecular machinery of autophagy2010

    • Organizer
      Traffic Symposium
    • Place of Presentation
      Kyoto
    • Year and Date
      2010-06-04
  • [Presentation] S. cerevisiae, revealed that 18 Atg proteins are essential for starvation-induced autophagy2009

    • Organizer
      EMBO Meeting
    • Place of Presentation
      Swiss
    • Year and Date
      20091016-21
  • [Presentation] Present knowledge of Atg proteins essential for autophagosome formation2009

    • Organizer
      5th ISA International Symposium on Autophagy
    • Place of Presentation
      Ohtsu, Japan
    • Year and Date
      20090924-28
  • [Presentation] Protein degradation2009

    • Organizer
      IUBMB
    • Place of Presentation
      Shanghai, China
    • Year and Date
      20090803-11
  • [Presentation] Ukraine Molecular dissection of autophagy-Intracellular recycling system-2008

    • Organizer
      12th International Congress on Yeasts, Plenary Lecture
    • Place of Presentation
      Kiev
    • Year and Date
      20080810-14
  • [Presentation] Molecular dissection of autophagy in yeast2008

    • Organizer
      The XX International Congress of Genetics
    • Place of Presentation
      Plenary Lecture, Germany
    • Year and Date
      20080714-19
  • [Presentation] Mechanism of autophagosome formation in yeast2008

    • Organizer
      Gordon Research Conference
    • Place of Presentation
      California, USA
    • Year and Date
      20080106-11
  • [Presentation] Molecular dissection of membrance dynamics during autophagy2007

    • Organizer
      Plenary Lecture
    • Place of Presentation
      Washington DC, USA
    • Year and Date
      20071205-05
  • [Presentation] Greek, Molecular dissection of autophagy process in yeast2007

    • Organizer
      International Proteolysis Society Conference
    • Year and Date
      20071020-24
  • [Presentation] Two conjugation systems required for autophagosome formation2007

    • Organizer
      EMBO Meeting
    • Place of Presentation
      Verona, Italy
    • Year and Date
      20070918-20
  • [Presentation] Critical questions on the molecular mechanism of autophagy2007

    • Organizer
      Gordon Research Conference
    • Place of Presentation
      London
    • Year and Date
      20070819-24
  • [Presentation] Molecular machinery necessary for the membrane dynamics during autophagy in yeast2007

    • Organizer
      Keystone Meeting
    • Place of Presentation
      Monterey, USA
    • Year and Date
      20070415-20
  • [Remarks]

    • URL

      http://www.ohsumilab.aro.iri.titech.ac.jp/

URL: 

Published: 2013-07-31  

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