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2010 Fiscal Year Final Research Report

Evolution of fish diversity : An approach from comprehensive and large-scale molecular phylogenetic analysis

Research Project

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Project/Area Number 19207007
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Biodiversity/Systematics
Research InstitutionThe University of Tokyo

Principal Investigator

NISHIDA Mutsumi  The University of Tokyo, 大気海洋研究所, 教授 (90136896)

Co-Investigator(Kenkyū-buntansha) MABUCHI Kohji  東京大学, 大気海洋研究所, 助教 (50401295)
MIYA Masaki  千葉県立中央博物館, 動物研究科, 上席研究員 (30250137)
Project Period (FY) 2007 – 2010
Keywords進化 / 魚類 / ミトコンドリアDNA / 多様性 / 分子系統 / ウナギ / メダカ / トゲウオ
Research Abstract

To illuminate the pattern of diversification of fishes, the biggest group in the vertebrate with nearly 27,000 species, whole mitochondrial genomes of various fishes have been sequenced. Extensive and intensive molecular phylogenetic analyses of the sequence data obtained provided a number of findings affording various insights into process of diversification of fishes on the earth.

  • Research Products

    (30 results)

All 2011 2010 2009 2008 2007 Other

All Journal Article (23 results) (of which Peer Reviewed: 23 results) Presentation (4 results) Book (1 results) Remarks (2 results)

  • [Journal Article] Multiple invasions into freshwater by pufferfishes (Teleostei : Tetraodontidae) : a mitogenomic perspective2011

    • Author(s)
      Yamanoue Y., 他
    • Journal Title

      PLoS ONE 6

      Pages: e17410

    • Peer Reviewed
  • [Journal Article] Remarkable morphological stasis in an extant vertebrate despite tens of millions of years of divergence2011

    • Author(s)
      Lavou S., 他
    • Journal Title

      Proc.Roy.Soc.B 278

      Pages: 1003-1008

    • Peer Reviewed
  • [Journal Article] Transfer RNA gene arrangement and codon usage in vertebrate mitochondrial genomes : a new insight into gene order conservation2010

    • Author(s)
      Satoh T.P., 他
    • Journal Title

      BMC Genomics 11

      Pages: 479

    • Peer Reviewed
  • [Journal Article] Deep-ocean origin of the freshwater eels2010

    • Author(s)
      Inoue J.G., 他
    • Journal Title

      Biol.Lett. 6

      Pages: 363-366

    • Peer Reviewed
  • [Journal Article] Mitochondrial phylogenomics of anchovies (family Engraulidae) and recurrent origins of pronounced miniaturization in the order Clupeiformes2010

    • Author(s)
      Lavoue S., M.Miya, M.Nishida
    • Journal Title

      Mol.Phylogen. Evol. 56

      Pages: 480-486

    • Peer Reviewed
  • [Journal Article] Evolutionary history of anglerfishes (Teleostei : Lophiiformes) : a mitogenomic perspective2010

    • Author(s)
      Miya M., 他
    • Journal Title

      BMC Evol.Biol. 10

      Pages: 58

    • Peer Reviewed
  • [Journal Article] Higher and lower-level relationships of the deep-sea fish order Alepocephaliformes (Teleostei : Otocephala) inferred from whole mitogenome sequences2009

    • Author(s)
      Poulsen J.Y., 他
    • Journal Title

      Biol.J.Linn.Soc. 98

      Pages: 923-936

    • Peer Reviewed
  • [Journal Article] Divergence time of the two regional medaka populations in Japan as a new time scale for comparative genomics of vertebrates2009

    • Author(s)
      Setiamarga D.H.E., 他
    • Journal Title

      Biol.Lett. 5

      Pages: 812-816

    • Peer Reviewed
  • [Journal Article] The historical biogeography of the freshwater knifefishes using mitogenomic approaches : A Mesozoic origin of the Asian notopterids (Actinopterygii : Osteoglossomorpha)2009

    • Author(s)
      Inoue J.G., Y.Kumazawa, M.Miya, M.Nishida
    • Journal Title

      Mol.Phylogen.Evol. 51

      Pages: 486-499

    • Peer Reviewed
  • [Journal Article] Reconstructing the phylogenetic relationships of the earth's most diverse clade of freshwater fishes-Order Cypriniformes (Actinopterygii : Ostariophysi) : A case ctudy using multiple nuclear loci and the mitochondrial genome2009

    • Author(s)
      Mayden R.L., 他
    • Journal Title

      Mol.Phylogen.Evol. 51

      Pages: 500-514

    • Peer Reviewed
  • [Journal Article] Explosive speciation of Takifugu : another use of fugu as a model system for evolutionary biology2009

    • Author(s)
      Yamanoue Y., 他
    • Journal Title

      Mol.Biol.Evol. 26

      Pages: 623-629

    • Peer Reviewed
  • [Journal Article] Unique patterns of pelvic fin evolution : a case study of balistoid fishes (Pisces : Tetraodontiformes) based on whole mitochondrial genome sequences2009

    • Author(s)
      Yamanoue Y., 他
    • Journal Title

      Mol.Phylogen.Evol. 50

      Pages: 179-189

    • Peer Reviewed
  • [Journal Article] Stickleback phylogenies resolved : Evidence from mitochondrial genomes and 11 nuclear genes2009

    • Author(s)
      Kawahara R., 他
    • Journal Title

      Mol.Phylogen.Evol. 50

      Pages: 401-404

    • Peer Reviewed
  • [Journal Article] Deep-sea mystery solved : astonishing larval transformations and extreme sexual dimorphism unite three fish families2009

    • Author(s)
      Johnson G.D., 他
    • Journal Title

      Biol.Lett. 5

      Pages: 235-239

    • Peer Reviewed
  • [Journal Article] Interrelationships of Atherinomorpha (medakas, flyingfishes, killifishes, silversides, and their relatives) : The first evidence based on whole mitogenome sequences2008

    • Author(s)
      Setiamarga D., H.E., 他
    • Journal Title

      Mol.Phylogen.Evol. 49

      Pages: 598-605

    • Peer Reviewed
  • [Journal Article] Mitogenomic evaluation of the historical biogeography of cichlids toward reliable dating of teleostean divergences2008

    • Author(s)
      Azuma Y., 他
    • Journal Title

      BMC Evol.Biol. 8

      Pages: 215

    • Peer Reviewed
  • [Journal Article] A new perspective on phylogeny and evolution of tetraodontiform fishes (Pisces : Acanthopterygii) based on whole mitochondrial genome sequences : Basal ecological diversification?2008

    • Author(s)
      Yamanoue Y., 他
    • Journal Title

      BMC Evol.Biol. 8

      Pages: 212

    • Peer Reviewed
  • [Journal Article] Monophyly, phylogenetic position and inter-familial relationships of the Alepocephaliformes (Teleostei) based on whole mitogenome sequences2008

    • Author(s)
      Lavoue S., 他
    • Journal Title

      Mol.Phylogen.Evol. 47

      Pages: 1111-1121

    • Peer Reviewed
  • [Journal Article] Interrelationships of the 11 gasterosteiform families (sticklebacks, pipefishes, and their relatives) : a new pespective based on whole mitogenome sequences from 75 higher teleosts2008

    • Author(s)
      Kawahara R., 他
    • Journal Title

      Mol.Phylogen.Evol. 46

      Pages: 224-236

    • Peer Reviewed
  • [Journal Article] Mitochondrial genome and a nuclear gene indicate a novel phylogenetic position of deep-sea tube-eye fish (Stylephoridae). Ichthyol2007

    • Author(s)
      Miya M., 他
    • Journal Title

      Res. 54

      Pages: 323-332

    • Peer Reviewed
  • [Journal Article] Phylogenetic position of tetraodontiform fishes within the higher teleosts : Bayesian inferences based on 44 whole mitochondrial genome sequences2007

    • Author(s)
      Yamanoue Y., 他
    • Journal Title

      Mol.Phylogen.Evol. 45

      Pages: 89-101

    • Peer Reviewed
  • [Journal Article] Phylogenetic relationships among anchovies, sardines, herrings and their relatives (Clupeiformes), inferred from whole mitogenome sequences2007

    • Author(s)
      Lavoue S., 他
    • Journal Title

      Mol.Phylogen.Evol. 43

      Pages: 1096-1105

    • Peer Reviewed
  • [Journal Article] Independent evolution of the specialized pharyngeal jaw apparatus in cichlid and labrid fishes2007

    • Author(s)
      Mabuchi K., M.Miya, Y.Azuma, M.Nishida
    • Journal Title

      BMC Evol.Biol. 7

      Pages: 10

    • Peer Reviewed
  • [Presentation] 魚類の進化に関する分子系統学的研究2010

    • Author(s)
      西田睦
    • Organizer
      日本進化学会
    • Place of Presentation
      東京工業大学大岡山キャンパス,東京.(日本進化学会賞受賞講演)
    • Year and Date
      2010-08-04
  • [Presentation] Molecular phylogenetic approach to the diversity of fishes2010

    • Author(s)
      Nishida M.
    • Organizer
      International symposium "Toward developing global genetic diversity assessments"
    • Place of Presentation
      Kushu University, Fukuoka. (Invited Lecture)
    • Year and Date
      2010-02-06
  • [Presentation] 魚類の進化を探る:その多様性への多面的アプローチ2008

    • Author(s)
      西田睦
    • Organizer
      本部企画シンポジウム「観察から研究へ」日本動物学会大会
    • Place of Presentation
      福岡大学,福岡.(招待講演)
    • Year and Date
      2008-09-06
  • [Presentation] Molecular phylogeny-based approach to evolution of fishes2007

    • Author(s)
      Nishida M.
    • Organizer
      Asia-Africa Evolution Meeting
    • Place of Presentation
      Seimeinomori Resort Nihon Aerobics Center, Chiba
    • Year and Date
      20071204-20071207
  • [Book] 海洋の生命史-生命は海でどのように進化したか2009

    • Author(s)
      西田睦(編著)
    • Total Pages
      420
    • Publisher
      東海大学出版会
  • [Remarks] ホームページ等

    • URL

      http://darwin.ori.u-tokyo.ac.jp/Nishidalab/

  • [Remarks] 大気海洋研究所 海洋生命科学部門 分子海洋生物学分野 西田睦研究室ホームページ

URL: 

Published: 2012-01-26   Modified: 2016-04-21  

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