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2010 Fiscal Year Final Research Report

Studies on the Structure and Function of Phytochromes as Photoreceptive Chromoproteins Based on Synthetic Organic Chemistry

Research Project

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Project/Area Number 19350082
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Chemistry related to living body
Research InstitutionKanazawa University

Principal Investigator

INOMATA Katsuhiko  Kanazawa University, 物質化学系, 教授 (50110599)

Project Period (FY) 2007 – 2010
Keywordsフィトクロム / 光受容色素蛋白質 / 発色団 / 開環状テトラピロール / 全合成 / 構造と機能相関 / 光分子スイッチ
Research Abstract

Toward investigation of the structure and function of phytochromes as photoreceptive chromoproteins regulating photomorphogenesis in plants, we have developed an efficient and flexible method for the preparation of chromophores (PΦB, PCB, and BV) of phytochromes, and have found a lot of insights into phytochromes. For example, we could directly reveal the stereochemistry of the chromophore in red light absorbing Pr-form and far-red light absorbing Pfr-form of Agrobacterium phytochromes, Agp1 and Agp2, by the assembly experiments of the chemically synthesized locked chromophores with apophytochromes.

  • Research Products

    (23 results)

All 2011 2010 2009 2008 2007 Other

All Journal Article (14 results) (of which Peer Reviewed: 14 results) Presentation (7 results) Book (1 results) Remarks (1 results)

  • [Journal Article] The Cyanobacteriochrome, TePixJ, Isomerizes Its Own Chromophore by Converting Phycocyanobilin to Phycoviolobilin2011

    • Author(s)
      T.Ishizuka, A.Kamiya, H.Suzuki, R.Narikawa, T.Noguchi, T.Kohchi, K.Inomata, M.Ikeuchi
    • Journal Title

      Biochemistry 50

      Pages: 953-961

    • Peer Reviewed
  • [Journal Article] Oxidation of Pyrrole- 2-carboxylates with o-Chloranil and Its Synthetic Application2011

    • Author(s)
      R.Sakata, R.Iwamoto, S.Fujinami, Y.Ukaji, K.Inomata
    • Journal Title

      Heterocycles 82

      Pages: 1157-1162

    • Peer Reviewed
  • [Journal Article] Fluorescence of Phytochrome Adducts with Synthetic Locked Chromophores2011

    • Author(s)
      B.Zienicke, L.-Y.Chen, H.Khawn, M.A.S.Hammam, H.Kinoshita, J.Reicher, A.S.Ulrich, K.Inomata, T.Lamparter
    • Journal Title

      J.Biol.Chem. 286

      Pages: 1103-1113

    • Peer Reviewed
  • [Journal Article] Total Syntheses of Sterically Locked Phycocyanobilin Derivatives Bearing a 15Z-anti or a 15E-anti CD-Ring Component, Bull.2010

    • Author(s)
      K.Nishiyama, A.Kamiya, M.S.A.Hammam, H.Kinoshita, S.Fujinami, Y.Ukaji, K.Inomata
    • Journal Title

      Chem.Soc.Jpn. 83

      Pages: 1309-1322

    • Peer Reviewed
  • [Journal Article] Light Induced Conformational Changes of the Chromophore and the Protein in Phytochromes: Bacterial Phytochromes as Model Systems2010

    • Author(s)
      P.Scheerer, N.Michael, J.H.Park, S.Nagano, H.-W.Choe, K.Inomata, B.Borucki, N.Kraus, T.Lamparter
    • Journal Title

      ChemPhysChem 11

      Pages: 1090-1105

    • Peer Reviewed
  • [Journal Article] Regioselective Oxidation of Pyrrole Derivatives with DDQ and Its Synthetic Application2010

    • Author(s)
      R.Iwamoto, Y.Ukaji, K.Inomata
    • Journal Title

      Chem.Lett. 39

      Pages: 176-177

    • Peer Reviewed
  • [Journal Article] Structural Insights into Vinyl Reduction Regiospecificity of Phycocyanobilin: Ferredoxin Oxidoreductase (PcyA)2010

    • Author(s)
      Y.Hagiwara, M.Sugishima, H.Khawn, H.Kinoshita, K.Inomata, L.Shang, J.C.Lagarias, Y.Takahashi, K.Fukuyama
    • Journal Title

      J.Biol.Chem. 284

      Pages: 1000-1007

    • Peer Reviewed
  • [Journal Article] The Use of Synthetic Linear Tetrapyrroles to Probe the Verdin Sites of Human Biliverdin-Ixα Reductase and Human Biliverdin-Ixβ Reductase2009

    • Author(s)
      E.M.Franklin, S.Browne, A.-M.Horan, K.Inomata, M.A.S.Hammam, H.Kinoshita, T. Lamparter, G.Golfis, T.J.Mantle
    • Journal Title

      FEBSJournal 276

      Pages: 4405-4413

    • Peer Reviewed
  • [Journal Article] Synthesis of Doubly Locked 5Zs15Za-Biliverdin Derivatives and Their Unique Spectral Behavior2009

    • Author(s)
      L.-Y.Chen, H.Kinoshita, K.Inomata
    • Journal Title

      Chem.Lett. 38

      Pages: 602-603

    • Peer Reviewed
  • [Journal Article] Assembly of Agrobacterium Phytochromes Agp1 and Agp2 with Doubly Locked Bilin Chromophores2009

    • Author(s)
      K.Inomata, H.Khawn, L.-Y.Chen, H.Kinoshita, B.Zienicke, I.Molina, T.Lamparter
    • Journal Title

      Biochemistry 48

      Pages: 2817-2827

    • Peer Reviewed
  • [Journal Article] Total Syntheses of Doubly Locked Biliverdin Derivatives toward Elucidation of the Stereochemistry of Phytochrome Chromophore2008

    • Author(s)
      H.Khawn, L.-Y.Chen, H.Kinoshita, K.Inomata
    • Journal Title

      Chem.Lett. 37

      Pages: 198-199

    • Peer Reviewed
  • [Journal Article] Studies on the Structure and Function of Phytochromes as Photoreceptors Based on Synthetic Organic Chemistry2008

    • Author(s)
      K.Inomata
    • Journal Title

      Bull.Chem.Soc.Jpn 81

      Pages: 25-59

    • Peer Reviewed
  • [Journal Article] Locked 5Zs-Biliverdin Blocks the Meta-RA to Meta-RC Transition in the Functional Cycle of Bacteriophytochrome Agp12007

    • Author(s)
      S.Seibeck, B.Borucki, H.Otto, K.Inomata, H.Khawn, H.Kinoshita, N.Michael, T.Lamparter, M.P.Heyn
    • Journal Title

      FEBS Lett. 581

      Pages: 5425-5429

    • Peer Reviewed
  • [Journal Article] Total Synthesis of Doubly Locked 5Za15Ea-Biliverdin Derivatives; A Convergent Synthesis of the E-anti Dipyrrole Component Locked with a 7-Membered Ring

    • Author(s)
      L.-Y.Chen, R.Iwamoto, Y.Ukaji, K.Inomata
    • Journal Title

      Chem.Let. in press

    • Peer Reviewed
  • [Presentation] 境界領域を志向した有機合成化学2011

    • Author(s)
      猪股勝彦
    • Organizer
      有機合成化学協会関西支部・近畿化学協会合成部会主催/有機合成新春講演会
    • Place of Presentation
      大阪市大阪科学技術センター(大阪府)
    • Year and Date
      2011-01-24
  • [Presentation] Synthetic Approach to the Structure and Function of Phytochrome Chromophores2010

    • Author(s)
      猪股勝彦
    • Organizer
      6th International Conference on Porphyrins and Phthalocyanines (ICPP-6)
    • Place of Presentation
      New Mexico (USA)
    • Year and Date
      2010-07-08
  • [Presentation] Studies on the Structure and Function of Phytochromes as Photoreceptors Based on Synthetic Organic Chemistry2008

    • Author(s)
      猪股勝彦
    • Organizer
      8th International Symposium on Fine Chemistry and Functional Polymers (FCFP-XVIII) & IUPAC 4th International Symposium on Novel Materials and Synthesis (NMS-IV)
    • Place of Presentation
      Zhenjiang (China)
    • Year and Date
      2008-10-17
  • [Presentation] Studies on the Structure and Function of Phytochromes as Photoreceptors Based on Synthetic Organic Chemistry, Ringberg Symposium, Spectroscopy of Sensory Photoreceptors2007

    • Author(s)
      猪股勝彦
    • Organizer
      Tagungsstatte of the Max-Planck-Gesellschaft "Schloss Ringberg" in Bad
    • Place of Presentation
      Tegernsee (Germany)
    • Year and Date
      2007-10-08
  • [Presentation] Studies on the Structure and Function of Phytochromes as Photoreceptors Based on Synthetic Organic Chemistry2007

    • Author(s)
      猪股勝彦
    • Organizer
      Freising Symposium, Light-induced Dynamics of Proteins, Kardinal-Dopfner-Hous
    • Place of Presentation
      Freising (Germany)
    • Year and Date
      2007-10-03
  • [Presentation] Studies on the Structure and Function of Phytochromes as Photoreceptors Based on Synthetic Organic Chemistry2007

    • Author(s)
      猪股勝彦
    • Organizer
      The Invited Lecture at Universitat Karlsruhe, Botanik 1
    • Place of Presentation
      Karlsruhe (Germany)
    • Year and Date
      2007-09-28
  • [Presentation] 生命現象解明における有機合成化学的アプローチ-光受容色素蛋白質フィトクロムの構造と機能-2007

    • Author(s)
      猪股勝彦
    • Organizer
      有機合成化学協会東海支部主催/若手研究者のためのセミナー
    • Place of Presentation
      信州大学繊維学部(長野県)
    • Year and Date
      2007-07-06
  • [Book] 使える!有機合成反応241実践ガイド(丸岡啓二,野崎京子,石井康敬,大寺純蔵,富岡清,編著)2010

    • Author(s)
      宇梶裕, 猪股勝彦
    • Total Pages
      504(226-227)(288-289)(306-307)
    • Publisher
      化学同人
  • [Remarks] ホームページ等

    • URL

      http://kurt.kanazawa-u.ac.jp/souran_ku/info.php?teacher_id=14

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Published: 2012-01-26   Modified: 2016-04-21  

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