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2009 Fiscal Year Final Research Report

Solid-state NMR analysis of membrane protein complexes with 7-transmembrane helices

Research Project

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Project/Area Number 19370068
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionOsaka University

Principal Investigator

FUJIWARA Toshimichi  Osaka University, 蛋白質研究所, 教授 (20242381)

Project Period (FY) 2007 – 2009
Keywords構造生物学 / 生物物理 / 蛋白質 / 原子・分子物理 / ナノバイオ / 生体分子
Research Abstract

Solid-state NMR enables the structural determination of biological molecular complexes in unoriented solids. We verified the usefulness of magic-angle spinning solid-state NMR based on dipolar and J couplings for the structural analysis of ^<13>C uniformly labeled biomolecular complexes. We applied solid-state NMR to halorhodopshin, mastoparan-X and 159-redisue transducer protein pHtrII in lipid bilayers. Solid-state NMR provided the detailed structure of mastoparan-X with membranes by combining NMR constraints with replica exchange molecular dynamics simulation using implicit membrane environment. This method was applied to NMR analysis of larger membrane proteins. ^1H-^<13>C correlations of mobile segments of pHtrII were analyzed.

  • Research Products

    (30 results)

All 2010 2009 2008 2007 Other

All Journal Article (12 results) (of which Peer Reviewed: 10 results) Presentation (13 results) Book (4 results) Remarks (1 results)

  • [Journal Article] 1H-Detected 1H-1H Correlation Spectroscopy of a Stereo-Array Isotope Labeled Amino Acid under Fast Magic-Angle Spinning2010

    • Author(s)
      Hiroki Takahashi, Masatsune Kainosho, Hideo Akutsu, Toshimichi Fujiwara
    • Journal Title

      J. Magn. Reson 203

      Pages: 253-256

    • Peer Reviewed
  • [Journal Article] Dynamic Nuclear Polarization Experiments at 14. 1 T for Solid-State NMR2010

    • Author(s)
      Yoh Matsuki, Hiroki Takahashi, Keisuke Ueda, Toshitaka Idehara, Isamu Ogawa, Mitsuru Toda, Hideo Akutsu, Toshimichi Fujiwara
    • Journal Title

      Phys. Chem. Chem. Phys DOI:10.1039/c002268c(in press)

    • Peer Reviewed
  • [Journal Article] Continuously Frequency Tunable High Power Sub-THz Radiation Source-Gyrotron FU CW VI for 600 MHz DNP-NMR spectroscopy2010

    • Author(s)
      Toshitaka Idehara, Kosuke Kosuga, La Agusu, Ryusuke Ikeda, Isamu Ogawa, Teruo Saito, Yoh Matsuki, Keisuke Ueda, Toshimichi Fujiwara
    • Journal Title

      J. Infrared Millim. Terahz. Waves DOI10.1007/s10762-010-9643-y(in press)

    • Peer Reviewed
  • [Journal Article] 固体nmr分光法による生体分子複合体の構造解析2009

    • Author(s)
      藤原敏道
    • Journal Title

      日本物理学会誌, 「実験技術」 64,(3月号)

      Pages: 179-186

    • Peer Reviewed
  • [Journal Article] 固体nmr膜蛋白質複合体構造解析技術(融合発展する構造生物学とケミカルバイオロジーの最前線)2009

    • Author(s)
      藤原敏道
    • Journal Title

      蛋白質核酸酵素 54(12)

      Pages: 1499-1505

  • [Journal Article] Fluid Mechanical Matching of H+-ATPsynthase Subunit c Ring with Lipid Membranes Revealed by 2H Solid-State NMR2008

    • Author(s)
      Masatoshi Kobayashi, Andrey V. Struts, Toshimichi Fujiwara, Michael F. Brown, Hideo Akutsu
    • Journal Title

      Biophys. J. 94

      Pages: 4339-4347

    • Peer Reviewed
  • [Journal Article] A Magic-Angle-Spinning NMR Method for 1H-1H Distance Measurement Using Coherent Polarization Transfer in 13C-Labeled Organic Solids2008

    • Author(s)
      Hiroki Takahashi, Hideo Akutsu, Toshimichi Fujiwara
    • Journal Title

      J. Chem. Phys 129154504

      Pages: 1-12

    • Peer Reviewed
  • [Journal Article] H+-ATP合成酵素のエネルギー変換機構とそこにおけるソフトな相互作用(特集:ソフトな相互作用による膜インターフェースの機能制御)2008

    • Author(s)
      阿久津秀雄, 八木宏昌, 藤原敏道
    • Journal Title

      生化学 第80巻,第10号

      Pages: 907-916

  • [Journal Article] Structure of the Light-Harvesting Bacteriochlorophyll c Assembly in Chlorosomes from Chlorobium Limicola Determined by Solid-State NMR2007

    • Author(s)
      A. Egawa, T. Fujiwara, T. Mizoguchi, Y. Kakitani, Y. Koyama, H. Akutsu
    • Journal Title

      Proc. Natl. Acad. Sci. U.S. A 104

      Pages: 790-795

    • Peer Reviewed
  • [Journal Article] Detailed Consideration of Experimental Results of Gyrotron FUCWII Developed as a Radiation Source for DNP-NMR Spectroscopy2007

    • Author(s)
      La Agusu, T. Idehara, I. Ogawa, T. Saito, T. Kanamaki, H. Takahashi., T. Fujiwara
    • Journal Title

      Int. J. Infrared Millim. Waves 28

      Pages: 499-511

    • Peer Reviewed
  • [Journal Article] Spectral Fitting for Signal Assignment and Structural Analysis of Uniformly 13C-Labeled Solid Proteins by Simulated Annealing Based on Chemical Shifts and Spin Dynamics2007

    • Author(s)
      Y. Matsuki, H. Akutsu, T. Fujiwara
    • Journal Title

      J. Biomol. NMR 38

      Pages: 325-339

    • Peer Reviewed
  • [Journal Article] Structural Analysis of Pituitary Adenylate Cyclase-Activating Polypeptides Bound to Phospholipid Membranes by Magic Angle Spinning Solid-State NMR2007

    • Author(s)
      Nobuyasu Komi, Kayo Okawa, Yukihiro Tateishi, Masahiro Shirakawa, Toshimichi Fujiwara, Hideo Akutsu
    • Journal Title

      Biochimica et Biophysica Acta-Biomembranes 1768

      Pages: 3001-3011

    • Peer Reviewed
  • [Presentation] 膜タンパク質ハロロドプシンの多次元固体NMR法による構造解析2009

    • Author(s)
      樋口真理花, 江川文子, 田巻初, 神谷昌克, 相沢智康, 河野敬一, 藤原敏道, 出村誠
    • Organizer
      第48回NMR討論会
    • Place of Presentation
      福岡
    • Year and Date
      2009-11-10
  • [Presentation] Implicit membrane modelを用いた分子動力学計算と固体NMRスペクトルシュミレーションによる膜結合ペプチド・マストパランXの構造解析(ポスター発表)2009

    • Author(s)
      池田恵介, 亀田倫史, 原田英里砂, 阿久津秀雄, 藤原敏道
    • Organizer
      第48回NMR討論会
    • Place of Presentation
      福岡
    • Year and Date
      2009-11-10
  • [Presentation] Method for the dynamic structural analysis of membrane proteins based on NMR、口頭2009

    • Author(s)
      藤原敏道
    • Organizer
      第47回日本生物物理学会
    • Place of Presentation
      徳島
    • Year and Date
      2009-11-01
  • [Presentation] Mainchain structural analysis of transmembrane halobacterial tranceducer pHtrIIby multi-dimensional MAS solid-state NMR2009

    • Author(s)
      A. Egawa, K. Hayashi, C. Kojima, H. Akutsu, T. Fujiwara
    • Organizer
      The 3rd Asia-Pacific NMR Symposium
    • Place of Presentation
      Jeju, Korea
    • Year and Date
      2009-10-25
  • [Presentation] Structural analysis of biomolecular complexes by solid-state NMR2009

    • Author(s)
      藤原敏道
    • Organizer
      International Symposium on Biological NMR
    • Place of Presentation
      Seoul, Korea
    • Year and Date
      2009-10-23
  • [Presentation] Solid-state NMR structural analysis of membrane proteins and sensitivity enhancement2009

    • Author(s)
      Toshimichi Fujiwara
    • Organizer
      2nd Symposium on Structural Analysis of Biological Macromolecules & 7th Japan-Korea Bilateral Symposium on Biological NMR
    • Place of Presentation
      札幌
    • Year and Date
      2009-07-27
  • [Presentation] 固体nmr膜蛋白質複合体構造解析技術2008

    • Author(s)
      藤原敏道, 出村誠, 児嶋長次郎
    • Organizer
      第46回生物物理学会シンポジウム
    • Place of Presentation
      福岡
    • Year and Date
      2008-12-05
  • [Presentation] 膜タンパク質固体NMR構造解析と高磁場DNP2008

    • Author(s)
      藤原敏道, 高橋大樹, 江川文子, 佐伯美和子, 阿久津秀雄, 林こころ, 児島長次郎, 出原敏孝, 小川勇, 戸田充
    • Organizer
      第47回NMR討論会
    • Place of Presentation
      筑波
    • Year and Date
      2008-11-13
  • [Presentation] 高磁場DNPと固体NMR生体分子複合体構造解析2008

    • Author(s)
      藤原敏道
    • Organizer
      大阪大学蛋白質研究所セミナー「先端磁気共鳴がもたらす生体系研究の新展開」
    • Place of Presentation
      大阪
    • Year and Date
      2008-07-29
  • [Presentation] Structural analysis of transmembrane halobacterial tranceducer pHtrII by multi-dimensional high-resolution solid-state NMR2008

    • Author(s)
      江川文子, 佐伯美和子, 林こころ, 児嶋長次郎, 阿久津秀雄, 藤原敏道
    • Organizer
      2nd Pacific Rim International Conference on Protein Science
    • Place of Presentation
      ケアンズ
    • Year and Date
      2008-06-23
  • [Presentation] Solid-State NMR for Structural Analysis of Biomolecular Complexes2008

    • Author(s)
      Toshimichi Fujiwara
    • Organizer
      Korea-Japan Bilateral Symposium on Biological NMR
    • Place of Presentation
      ソウル
    • Year and Date
      2008-04-25
  • [Presentation] 13C-13C and 1H-1H Distance Analysis from the Polarization Transfer in Uniformly 13C-Labeled Organic Solids under Magic-Angle Spinning2008

    • Author(s)
      H. Takahashi, A. Egawa, H. Akutsu, T. Fujiwara
    • Organizer
      the 49th Experimental NMR Conference, Asilomar Conference Grounds
    • Place of Presentation
      Pacific Grove, CA, USA(口頭発表)
    • Year and Date
      2008-03-10
  • [Presentation] Solid-state NMR of pharaonis halorhodopsin, Optimization of sample preparation2007

    • Author(s)
      Marika Higuchi, Ayako Egawa, Masakatsu Kamiya, Tomoyasu Aizawa, Keiichi Kawano, Toshimichi Fujiwara, Makoto Demura
    • Organizer
      第45回生物物理学会
    • Place of Presentation
      パシフィコ横浜(口頭発表)
    • Year and Date
      2007-12-21
  • [Book] タンパク質の同位体ラベルとnmr分光法2009

    • Author(s)
      藤原敏道, 池上貴久
    • Total Pages
      167-196
    • Publisher
      化学同人
  • [Book] Structural analysis of membrane systems by solid-state NMR2008

    • Author(s)
      Y. Todokoro, M. Kobayashi, T. Fujiwara, H. Akutsu
    • Total Pages
      173-182
    • Publisher
      Osaka University Press
  • [Book] Secondary Structure Analysis of Proteins from Angle Dependent Interactions2007

    • Author(s)
      T. Fujiwara, H. Akutsu
    • Total Pages
      731-736
    • Publisher
      Springer
  • [Book] “固体高分解能NMR"生命科学のための機器分析実験ハンドブック(実験医学別冊)2007

    • Author(s)
      阿久津秀雄, 藤原敏道
    • Total Pages
      157-162
    • Publisher
      羊土社
  • [Remarks]

    • URL

      http://www.protein.osaka-u.ac.jp/biophys/

URL: 

Published: 2011-06-18   Modified: 2016-04-21  

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