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2010 Fiscal Year Final Research Report

Nonequilibrium thermodynamics for fluctuations of biopolymers

Research Project

  • PDF
Project/Area Number 19540392
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Mathematical physics/Fundamental condensed matter physics
Research InstitutionIbaraki University

Principal Investigator

NAKAGAWA Naoko  Ibaraki University, 理学部, 准教授 (60311586)

Project Period (FY) 2007 – 2010
Keywords統計物理学 / 非平衡・非線形物理学
Research Abstract

Aiming at the construction of the formulation to describe the working mechanism of biopolymers, we study nonequilibrium steady states analytically. We obtain a concise expression for the probability distribution function correct up to the second order of the degree of nonequilibrium. From this expression, we arrive at a naturally extended Clausius relation to nonequilibrium. We next extend the relation to the second order of the degree of nonequilibrium and find that we should include a twist term, which especially appears in nonlinear nonequilibrium. From a different point of view to examine proteins' dynamics, we study slow fluctuations in a protein model and characterize them by a four-point correlation-functions.

  • Research Products

    (13 results)

All 2011 2010 2009 2008 2007

All Journal Article (7 results) (of which Peer Reviewed: 7 results) Presentation (6 results)

  • [Journal Article] Entropy and nonlinear nonequilibrium thermodynamic relation for heat conducting steady states2011

    • Author(s)
      Teruhisa S.Komatsu, Naoko Nakagawa, Shin-ichi Sasa, Hal Tasaki
    • Journal Title

      Journal of Statistical Physics vol.142

      Pages: 127-153

    • Peer Reviewed
  • [Journal Article] Stationary distribution and thermodynamic relation in nonequilibrium steady states2010

    • Author(s)
      Teruhisa S.Komatsu, Naoko Nakagawa, Shin-ichi Sasa, Hal Tasaki, N.Ito
    • Journal Title

      Progress of Theoretical Physics, Supplement vol.184

      Pages: 329-338

    • Peer Reviewed
  • [Journal Article] Representation of nonequilibrium steady states in large mechanical systems2009

    • Author(s)
      Teruhisa S.Komatsu, Naoko Nakagawa, Shin-ichi Sasa, Hal Tasaki
    • Journal Title

      Journal of Statistical Physics vol.134

      Pages: 401-423

    • Peer Reviewed
  • [Journal Article] Steady-State Thermodynamics for Heat Conduction : Microscopic Derivation2008

    • Author(s)
      Teruhisa S.Komatsu, Naoko Nakagawa, Shin-ichi Sasa, Hal Tasaki
    • Journal Title

      Physical Review Letters vol.100

      Pages: 230602

    • Peer Reviewed
  • [Journal Article] Expression for the Stationary Distribution in Nonequilibrium Steady States2008

    • Author(s)
      Teruhisa S.Komatsu, Naoko Nakagawa
    • Journal Title

      Physical Review Letters vol.100

      Pages: 030601

    • Peer Reviewed
  • [Journal Article] A Reversibility Parameter for a Markovian Stepper2007

    • Author(s)
      Takahiro Harada, Naoko Nakagawa
    • Journal Title

      Europhysics Letters vol.78

      Pages: 50002

    • Peer Reviewed
  • [Journal Article] Confomational Temperature Characterizing the Folding of a Protein2007

    • Author(s)
      Naoko Nakagawa
    • Journal Title

      Physical Review Letters vol.98

      Pages: 128104

    • Peer Reviewed
  • [Presentation] 非平衡定常系における熱力学関係式とオンサガーの相反関係2010

    • Author(s)
      中川尚子
    • Organizer
      日本物理学会
    • Place of Presentation
      大阪府立大学
    • Year and Date
      2010-09-24
  • [Presentation] 「非線形非平衡」の拡張クラウジウス関係式2009

    • Author(s)
      中川尚子
    • Organizer
      日本物理学会
    • Place of Presentation
      熊本大学
    • Year and Date
      2009-09-26
  • [Presentation] On the Second law of Steady State Thermodynamics2009

    • Author(s)
      中川尚子
    • Organizer
      Frontiers in Nonequilibrium Physics
    • Place of Presentation
      京都大学
    • Year and Date
      2009-08-03
  • [Presentation] Comformational temperature characterizing the folding of a protein2008

    • Author(s)
      中川尚子
    • Organizer
      Frontier of Glassy Physics
    • Place of Presentation
      京都大学
    • Year and Date
      2008-11-20
  • [Presentation] 非平衡定常系における熱力学関係式とその応用12008

    • Author(s)
      中川尚子
    • Organizer
      日本物理学会
    • Place of Presentation
      近畿大学
    • Year and Date
      2008-03-24
  • [Presentation] 仕事分布に現れる記憶効果と非平衡度の影響2007

    • Author(s)
      中川尚子
    • Organizer
      日本物理学会
    • Place of Presentation
      北海道大学
    • Year and Date
      2007-09-24

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Published: 2012-01-26   Modified: 2016-04-21  

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