Mechanisms of infra-specific differentiation of plant species with special reference to selective pressure induced by heterogeneous habitats

2008 Fiscal Year Final Research Report

• Project/Area Number: 19570085
• Research Category: Grant-in-Aid for Scientific Research (C)
• Allocation Type: Single-year Grants
• Section: 一般
• Research Field: Biodiversity/Systematics
• Research Institution: Kyoto University
• Principal Investigator: SETOGUCHI Hiroaki Kyoto University, 大学院人間・環境学研究科, 准教授 (70206647)
• Co-Investigator(Kenkyū-buntansha): OGINUMA Kazuo 高知女子大学, 生活科学部, 教授 (30106794) ; 小林 史郎 , 財団法人高知県・牧野記念財団, 研究員 (50393434)
• Co-Investigator(Renkei-kenkyūsha): OGINUMA Kazuo 高知女子大学, 生活科学部, 教授 (30106794)
• Project Period (FY): 2007 – 2008
• Keywords: 進化 / 多様性 / 光環境 / 緯度傾度 / フィトクロム / 地質固有種 / 蛇紋岩土壌 / 渓流環境

Research Abstract

ミヤマタネツケバナで, 緯度傾度に沿って環境からもたらされる自然選択圧がフィトクロム遺伝子群に与える影響について調べた。phyA-phyEまでの塩基配列を解析して、非中立進化を検証した。そしてphyEが緯度傾度に沿って自然選択を受けており, 非同義的置換がPHYドメインに集中して蓄積していた。このことは, 緯度によって異なる光環境に対して適応し, 種内で種内分化が起きていることを示唆している

Research Products

• [Journal Article] Glacial range expansions and postglacial fragmentations shaped homogenusgenetic structure of Arcterica nana(Maxim.)Makino(Ericaceae) (2009)
  • Author(s): Ikeda H. and Setoguchi H
  • Journal Title: Journal of Plant Research 122 Pages: 141-151
  • Peer Reviewed
• [Journal Article] High mountains in the Japanese archipelago were refugia of arctic alpine plants : phylogeography of Loiseleuria procumbens(L.)Desvaux (2009)
  • Author(s): Ikeda, H. Senni, K., Fujii, N. and Setoguchi, H
  • Journal Title: Biological Journal of the Linnean Society (in press)
  • Peer Reviewed
• [Journal Article] Genetic structure among and within populations of serpentine endemic Heteropappus hispidus ssp. Leptocladus(Compositae) (2009)
  • Author(s): Yokoo, T., Kobayashi, S., Fujikawa, S., Oginuma, K., Mitsui, Y., Ikeda, H. and Setoguchi, H
  • Journal Title: Biochemical Systematics and Ecology (in press)
  • Peer Reviewed
• [Journal Article] Genetic diversity and geographical structure of the pitcher plant in New Caledonia : a chloroplast DNA haplotype analysis (2008)
  • Author(s): Kurata, K., Jaffre, T. and Setoguchi, H
  • Journal Title: American Journal of Botany 95 Pages: 1632-1644
  • Peer Reviewed
• [Journal Article] Plant-size and leaf dimorphism of vulnerable species Ilex dimorphophylla(Aquifoliacee)on Amamioshima Island in the Ryukyu Archipelago (2008)
  • Author(s): Setoguchi, H., Nakagawa, M. and Momohara, A
  • Journal Title: Journal of Phytogeography and Taxonomy 56 Pages: 7-11
  • Peer Reviewed
• [Journal Article] Genetic structure of refugial populations of the temperate plant Shortia rotundifolia(Diapensiaceae)on a subtropical island (2008)
  • Author(s): Dan, T., Ikeda, H., Mitsui, Y., Isagi, Y. and Setoguchi, H
  • Journal Title: Conservation Genetics (in press)
  • Peer Reviewed
• [Journal Article] Isolation and characterization of microsatellite loci in Ainsliaea faurieana(Asteraceae), an endemic plant species on Yakushima Island, Japan, and cross-species amplification in closely related taxa (2008)
  • Author(s): Mitsui, Y., Isagi, Y. and Setoguchi, H
  • Journal Title: Molecular Ecology Resources (in press)
  • Peer Reviewed
• [Journal Article] Development and characterization of microsatellite loci in the endangered Tricyrtis ishiiana(Convallariaceae), a local endemic plant in Japan (2008)
  • Author(s): Setoguchi, H., Mitsui, Y., Ikeda, H., Nomura, N., Tamura, A
  • Journal Title: Conservation Genetics (in press)
  • Peer Reviewed
• [Journal Article] Karyomorphology of Corylopsis glabrecens and C. gotoana endemic to Japan(Hamamelidaceae ; Hamamelidoideae) (2008)
  • Author(s): Kono, Y., Okada, M., Setoguchi, H., Oginuma, K
  • Journal Title: Chromosome Science 3 Pages: 27-29
  • Peer Reviewed
• [Journal Article] Isolation and characterization of microsatellite loci in Shortia rotundifolia (Diapensiaceae), an endangered relict plant on the Ryukyu Islands and Taiwan (2008)
  • Author(s): Dan, T., Mitsui, Y. Isagi, Y. and Setoguchi, H
  • Journal Title: Conservation Genetics (in press)
  • Peer Reviewed
• [Journal Article] Multiple sequences of chloroplast and nuclear DNA revealed postglacial range contraction and strong bottleneck in Cardamine nipponica Franch. et Savat (2008)
  • Author(s): Ikeda, H. Senni, K., Fujii, N. and Setoguchi, H
  • Journal Title: (Brassicaceae). Molecular Ecology 17 Pages: 3178-3188
  • Peer Reviewed
• [Journal Article] Distinct geographic structure across species units evidenced by chloroplast DNA haplotypes and nuclear ribosomal ITS genotypes of Corylopsis(Hamamelidaceae)in the Japanese islands (2008)
  • Author(s): Yamanaka, M., Kobayashi, S. and Setoguchi, H
  • Journal Title: Botanical Journal of the Linnean Society 157 Pages: 501-518
  • Peer Reviewed
• [Journal Article] High mountains in central Japan were important area for surviving climatic oscillations and genetic divergence of an arctic- alpine plants, Diapensia lapponica L. subsp. Obovata(Fr. Schm.)Hulten(Diapensiaceae) (2008)
  • Author(s): Ikeda, H. Senni, K., Fujii, N. and Setoguchi, H
  • Journal Title: Plant Systematics and Evolution 272 Pages: 197-210
  • Peer Reviewed
• [Journal Article] Phylogeography of Japanese water crowfoot based on chloroplast DNA haplotypes (2008)
  • Author(s): Koga, K., Kadono, Y. and Setoguchi, H
  • Journal Title: Aquatic Botany 89 Pages: 1-8
  • Peer Reviewed
• [Journal Article] Phylogeny and biogeography of the genus Ainsliaea(Asteraceae)in the Sino- Japanese Region based on nuclear rDNA and cpDNA sequence data. (2008)
  • Author(s): Mistui, Y., Chen S.T., Zhou, Z.K., Peng, C.I., Deng Y.F., and Setoguchi, H
  • Journal Title: Annals of Botany 101 Pages: 111-124
  • Peer Reviewed
• [Journal Article] Molecular phylogeny of the genus Pieris(Ericaceae)with special reference to phylogenetic relationships of insular plants on the Ryukyu Islands (2008)
  • Author(s): Setoguchi, H., Watanabe, W. and Maeda, Y
  • Journal Title: Plant Systematics and Evolution 270 Pages: 217-230
  • Peer Reviewed
• [Journal Article] Postglacial range fragmentation is responsible for the current distribution of Potentilla matsumurae (Rosaceae) in the Japanese archipelago (2008)
  • Author(s): Ikeda, H., Senni, K., Fujii, N. and Setoguchi, H
  • Journal Title: Journal of Biogeography 35 Pages: 791-800
  • Peer Reviewed
• [Journal Article] Intraspecific polyploidy of Houttuynia cordata and chromosome number evolution in Saururaceae (2007)
  • Author(s): Oginuma, K., Chen, S.T., Zhou, Z.K., Peng, C.I., Momohara, A. and Setoguchi, H
  • Journal Title: Chromosome Botany 2 Pages: 87-91
  • Peer Reviewed
• [Journal Article] AFLP analysis of stenophylly for leaf productivity : comparison of the anatomy and physiology of a rheophyte, Farfugium japonicum var. luchuence, and a related non-rheophyte, F. japonicum(Asteraceae) (2007)
  • Author(s): Nomura, N., Setoguchi, H., Yasuda, K. and Takaso, T
  • Journal Title: Canadian Journal of Botany 85 Pages: 637-643
  • Peer Reviewed
• [Journal Article] Genetic structure of populations of the vulnerable aquatic macrophyte Ranunculus nipponicus(Ranunculaceae) (2007)
  • Author(s): Koga, K., Kadono, Y. and Setoguchi, H
  • Journal Title: Journal of Plant Research 120 Pages: 167-174
  • Peer Reviewed
• [Journal Article] Phylogeography and refugia of the Japanese endemic alpine plant Phyllodoce nipponica Makino(Ericaceae) (2007)
  • Author(s): Ikeda, H. and Setoguchi, H
  • Journal Title: Journal of Biogeography 34 Pages: 169-176
  • Peer Reviewed
• [Journal Article] Molelular evolution of phytochromes in Cardamine nipponica(Brassicaceae)suggests the involvement of PHYE in local adaptation
  • Author(s): Ikeda, H., Fujii, N. and Setoguchi, H
  • Journal Title: Genetics (in press)
  • Peer Reviewed
• [Journal Article] Development and characterization of microsatellite loci in Farfugium japonica
  • Author(s): Nomura, N., Fujiwara, K., Takaso, T., Ito, M., and Setoguchi, H
  • Journal Title: Conservation Genetics (in press)
  • Peer Reviewed
• [Journal Article] Isolation and characterization of microsatellite loci in Calystegia solandrii
  • Author(s): Noda, A., Nomura, N., Mitsui, Y. and Setoguchi, H
  • Journal Title: Conservation Genetics (in press)
  • Peer Reviewed
• [Presentation] (2008)屋久島の渓流帯と林床におけるホソバハグマとキッコウハグマの遺伝的・生理生態的分化 : 浸透性交雑の検証と光合成特性の比較解析 (2009)
  • Author(s): 三井裕樹・野村尚史・井鷺裕治・戸部博・瀬戸口浩彰
  • Organizer: 日本生態学会第56回大会
  • Place of Presentation: 岩手県立大学(盛岡市)
  • Year and Date: 20090317-21
• [Presentation] (2008)渓流沿い植物の葉形態変異と分断化淘汰 : ハビタット構造と自然選択 (2009)
  • Author(s): 野村尚史・藤原健人・伊藤元己・瀬戸口浩彰・高相徳史郎
  • Organizer: 日本生態学会第56回大会
  • Place of Presentation: 岩手県立大学(盛岡市)
  • Year and Date: 20090317-21
• [Presentation] (2008)PHYE遺伝子によるコメバツガザクラ(Arcterica nana)の系統地理 (2009)
  • Author(s): 池田啓・瀬戸口浩彰
  • Organizer: 日本植物分類学会第8回大会
  • Place of Presentation: 東京エレクトロンホール宮城(仙台市)
  • Year and Date: 20090313-15
• [Presentation] (2008)屋久島の渓流帯と林床におけるホソバハグマとキッコウハグマの遺伝的・生理生態的分化 : 浸透性交雑の検証と光合成特性の比較解析 (2009)
  • Author(s): 三井裕樹・野村尚史・井鷺裕治・戸部博・瀬戸口浩彰
  • Organizer: 日本植物分類学会第8回大会
  • Place of Presentation: 東京エレクトロンホール宮城(仙台市)
  • Year and Date: 20090313-15
• [Presentation] (2008)琵琶湖に生育するハマヒルガオの長期的隔離と遺伝的特性 (2009)
  • Author(s): 野田明日香・瀬戸口浩彰
  • Organizer: 日本植物分類学会第8回大会
  • Place of Presentation: 東京エレクトロンホール宮城(仙台市)
  • Year and Date: 20090313-15
• [Presentation] (2008)ヤエヤマカンアオイにおける花の匂いの発見 (2009)
  • Author(s): 東浩司・長澤淳一・瀬戸口浩彰
  • Organizer: 日本植物分類学会第8回大会
  • Place of Presentation: 東京エレクトロンホール宮城(仙台市)
  • Year and Date: 20090313-15
• [Presentation] (2008)日本列島におけるトチノキ(Aesculus turbiana)の系統地理 (2009)
  • Author(s): 菅原可奈子・金子有子・瀬戸口浩彰
  • Organizer: 日本植物分類学会第8回大会
  • Place of Presentation: 東京エレクトロンホール宮城(仙台市)
  • Year and Date: 20090313-15
• [Presentation] (2008)渓流沿い植物ホソバハグマと林床生近縁種キッコウハグマの光合成特性の比較解析 (2008)
  • Author(s): 三井裕樹・野村尚史・瀬戸口浩彰
  • Organizer: 日本植物学会第72回大会
  • Place of Presentation: 高知大学(高知市)
  • Year and Date: 20080925-27
• [Presentation] (2008)ミヤマタネツケバナ(Cardamine nipponica)のPHYE光センサードメインにおける南北間での適応的分化 (2008)
  • Author(s): 池田啓・藤井紀行・瀬戸口浩彰
  • Organizer: 日本植物学会第72回大会
  • Place of Presentation: 高知大学(高知市)
  • Year and Date: 20080925-27
• [Presentation] (2008)リュウキュウツワブキの表現形多型と選択圧 (2008)
  • Author(s): 野村尚史・藤原健人・瀬戸口浩彰・伊藤元己・高相徳史郎
  • Organizer: 日本植物学会第72回大会
  • Place of Presentation: 高知大学(高知市)
  • Year and Date: 20080925-27
• [Presentation] (2008). Vicariance and Evolutionary History of Cardamine nipponica(Brassicaceae), Japanese endemic alpine plant. Botany (2008)
  • Author(s): Ikeda H, Senni K, Fujii N, Setoguchi H
  • Organizer: 2008(アメリカ合衆国植物学会)
  • Place of Presentation: ブリティッシュコロンビア大学
  • Year and Date: 20080718-22