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2009 Fiscal Year Self-evaluation Report

Detecting neofunctionalized genes

Research Project

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Project/Area Number 19681020
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field 基礎ゲノム科学
Research InstitutionThe Graduate University for Advanced Studies

Principal Investigator

印南 秀樹  The Graduate University for Advanced Studies, 葉山高等研究センター, 准教授 (90444140)

Project Period (FY) 2007 – 2010
Keywordsゲノム進化 / 再編
Research Abstract

本研究の目的は、ゲノムが遺伝子重複により新規機能遺伝子を獲得するときの、進化メカニズムの一般的法則を理解することにある。そして、その結果をもとに、新規機能遺伝子をゲノム中から探し出し、それらに対して集団遺伝及び分子進化解析を行うことにより、ゲノム進化のメカニズムの解明を目指す。

  • Research Products

    (31 results)

All 2010 2009 2008 Other

All Journal Article (21 results) (of which Peer Reviewed: 20 results) Presentation (9 results) Remarks (1 results)

  • [Journal Article] The evolution of gene duplications: classifying and distinguishing between models.2010

    • Author(s)
      Innan, H., F. kondrashov
    • Journal Title

      Nat. Rev. Genet. 11

      Pages: 97-108

    • Peer Reviewed
  • [Journal Article] An explicit signature of balancing selection for color vision variation in New World Monkeys.2010

    • Author(s)
      Hiwatashi, T., Okabe, H. Tsutsui, T., Hiramatsu, C., Melin, A.D., Oota, H., Schaffner, C.M., Aureli, F., Fedigan, L.M., Innan, H., S. Kawamura
    • Journal Title

      Mol. Biol. Evol. 27

      Pages: 453-464

    • Peer Reviewed
  • [Journal Article] The power of the methods for detecting interlocus gene conversion.2010

    • Author(s)
      Mansai, S.P., H. Innan
    • Journal Title

      Genetics 184

      Pages: 517-527

    • Peer Reviewed
  • [Journal Article] Recombination yet inefficient selection along the Drosophila melanogaster subgroup's fourth chromosome.2010

    • Author(s)
      Arguello, J.R., Zhang, Y., Kado, T., Fan, C., Zhao, R., Innan, H., Wang, W., Long. M.
    • Journal Title

      Mol. Biol. Evol. 27

      Pages: 848-861

    • Peer Reviewed
  • [Journal Article] On the estimation of the insertion time of LTR retrotransposable elements.2010

    • Author(s)
      Kijima. T.E., H. Innan
    • Journal Title

      Mol. Bio. Evol. 27

      Pages: 896-904

    • Peer Reviewed
  • [Journal Article] Population genetic models of duplicated genes.2009

    • Author(s)
      Innan, H.
    • Journal Title

      Genetica 137

      Pages: 19-37

  • [Journal Article] Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice.2009

    • Author(s)
      Takahashi, Y., K.M. Teshima, S. Yokoi, H. Innan, K. Shimamoto
    • Journal Title

      Proc. Natl. Acad. Sci. USA. 106

      Pages: 4555-4560

    • Peer Reviewed
  • [Journal Article] Potential of fish opsin gene duplications to evolve new adaptive functions.2009

    • Author(s)
      Gojobori, J., H. Innan
    • Journal Title

      Trends Genet 25

      Pages: 198-202

    • Peer Reviewed
  • [Journal Article] mbs: modifying Hudson's ms software to generate samples of DNA sequences with a biallelic site under selection.2009

    • Author(s)
      Teshima, K.M., H. Innan
    • Journal Title

      BMC Bioinformatics 10

      Pages: 166

    • Peer Reviewed
  • [Journal Article] Meta-analysis and Combining Information in Genetics2009

    • Author(s)
      Nakhleh, L., D. Ruths, H. Innan, D. Allison.
    • Journal Title

      Chapman & Hall

    • Peer Reviewed
  • [Journal Article] Selection to maintain paralogous amino acid differences under the pressure of gene conversion in the heat shock protein genes in yeast.2009

    • Author(s)
      Takuno, S., H. Innan
    • Journal Title

      Mol. Biol. Evol. 26

      Pages: 2655-2659

    • Peer Reviewed
  • [Journal Article] Evolution of complexity in miRNA mediated gene regulation systems.2008

    • Author(s)
      Takuno, S., H. Innan
    • Journal Title

      Trends in Genet 24

      Pages: 57-59

    • Peer Reviewed
  • [Journal Article] Inferring the process of human-chimpanzee speciation.2008

    • Author(s)
      Takahasi, K., H. Innan
    • Journal Title

      Encyclopedia of Life Sciences

    • Peer Reviewed
  • [Journal Article] Neofunctionalization of duplicated genes under the pressure of gene conversion.2008

    • Author(s)
      Teshima, KM., H. Innan
    • Journal Title

      Genetics 178

      Pages: 1385-1398

    • Peer Reviewed
  • [Journal Article] Non-independent domestication of the two rice subspecies, Oryza sativa subsp.2008

    • Author(s)
      Gao, L.-z., H. Innan
    • Journal Title

      indica and subsp. japonica, demonstrated by multilocus microsatellites. Genetics 179

      Pages: 965-976

    • Peer Reviewed
  • [Journal Article] Efficient inference of bacterial strain tree from genome-scale multi-locus data.2008

    • Author(s)
      Than, C., R. Sugino, H. Innan, L. Nakhleh
    • Journal Title

      Bioinfomatics 24

      Pages: i123-i131

    • Peer Reviewed
  • [Journal Article] The direction of linkage disequilibrium: a new measure based on ancestral-derived status of segregating alleles.2008

    • Author(s)
      Takahasi, K.R., H. Innan
    • Journal Title

      Genetics 179

      Pages: 1705-1712

    • Peer Reviewed
  • [Journal Article] Detecting local adaptation using the joint sampling of polymorphism data in the parental and derived populations.2008

    • Author(s)
      Innan, H., Y. Kim
    • Journal Title

      Genetics 179

      Pages: 1713-1720

    • Peer Reviewed
  • [Journal Article] The Evolutionary Rate of Duplicated Genes under Concerted Evolution.2008

    • Author(s)
      Mano, S., H. Innan
    • Journal Title

      Genetics 180

      Pages: 493-505

    • Peer Reviewed
  • [Journal Article] Preservation of a pseudogene by gene conversion and diversifying selection.2008

    • Author(s)
      Takuno, S., T. Nishio, Y. Satta, H. Innan
    • Journal Title

      Genetics 180

      Pages: 517-531

    • Peer Reviewed
  • [Journal Article] Duplication and gene conversion in the Drosophila melanogaster genome.2008

    • Author(s)
      Osada, N., H. Innan
    • Journal Title

      PLoS Genet 4

      Pages: 1000305

    • Peer Reviewed
  • [Presentation] 交叉と遺伝子変換による組換え率の推定法2009

    • Author(s)
      角友之、印南秀樹
    • Organizer
      遺伝学会
    • Place of Presentation
      信州大学
    • Year and Date
      2009-09-18
  • [Presentation] 遺伝子変換の検出方法の比較2009

    • Author(s)
      萬歳明香、印南秀樹
    • Organizer
      遺伝学
    • Place of Presentation
      信州大学
    • Year and Date
      2009-09-18
  • [Presentation] 自然選択の影響をうけたDNA配列を生成するCoalescentシミュレーションプログラムの開発2009

    • Author(s)
      手島康介、印南秀樹
    • Organizer
      遺伝学会
    • Place of Presentation
      信州大学
    • Year and Date
      2009-09-17
  • [Presentation] 硬骨魚におけるオプシン遺伝子の重複とその適応的役割2009

    • Author(s)
      五條堀淳、印南秀樹
    • Organizer
      遺伝学会
    • Place of Presentation
      信州大学
    • Year and Date
      2009-09-17
  • [Presentation] LTRレトロトランスポゾンの転移時期の推定に対する遺伝子変換の影響2009

    • Author(s)
      木島隆之、印南秀樹
    • Organizer
      遺伝学会
    • Place of Presentation
      信州大学
    • Year and Date
      2009-09-17
  • [Presentation] Detecting gene conversion between duplicated genes.2009

    • Author(s)
      Innan, H.
    • Organizer
      PAG 2009
    • Place of Presentation
      San Diego
    • Year and Date
      2009-01-10
  • [Presentation] 相互作用のあるときの2遺伝子座モデルとその応用2008

    • Author(s)
      印南秀樹
    • Organizer
      遺伝学会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2008-09-04
  • [Presentation] Coevolution of duplicated genes.2008

    • Author(s)
      Innan, H.
    • Organizer
      BGRS
    • Place of Presentation
      Novosivirsk, Russia
    • Year and Date
      2008-06-25
  • [Presentation] Signature of neofunctionalization of duplicated genes under the pressure of gene conversion2008

    • Author(s)
      Innan, H., K. Teshima, N. Osada
    • Organizer
      SMBE
    • Year and Date
      2008-06-06
  • [Remarks]

    • URL

      http://www.sendou.soken.ac.jp/esb/innan/InnanLab/

URL: 

Published: 2011-06-18   Modified: 2016-04-21  

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