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2020 Fiscal Year Research-status Report

Identification and characterization of novel virulence factors of Staphylococcus aureus USA300 using silkworm model.

Research Project

Project/Area Number 19K16653
Research InstitutionHokkaido University

Principal Investigator

PAUDEL ATMIKA  北海道大学, 人獣共通感染症リサーチセンター, 特任助教 (80832774)

Project Period (FY) 2019-04-01 – 2022-03-31
Keywordshost-pathogen / virulence factor / silkworm infection model / Bombyx mori / pathogenesis
Outline of Annual Research Achievements

We performed exo-protein profiling of yjbI and yjbH disruption mutants. The mutants produced more exo-protein while less surface protein than the wildtype. Introduction of gene into the mutants restored the phenotypes. In consistent with this, Gene Ontology term analysis showed that cellular components were among the highly enriched genes in the mutant. Further, there was a decrease in expression of the genes involved in pathogenesis. We further found that disruptions of yjbI and yjbH reduced the mice-killing ability of S. aureus, which was restored in the gene-complemented strain. In the presence of a free radical scavenger, the silkworm-killing ability of the mutants is restored, suggesting the role of the genes in oxidative stress tolerance in vivo. In addition, RNA-sequencing analysis of all the other 7 less-virulent mutants was performed. In other mutants, expression of specific kinds of genes were affected, the detailed analysis of which is underway. The research work was then extended to another Gram-positive bacteria Bacillus cereus group. A silkworm infection model of Bacillus anthracis vaccine strain Sterne was established using florescent protein-expressing B. anthracis strain. Antibiotics administration to the infected larvae could cure them from infection. Mutants of B. anthracis with disruption in known virulence genes had reduced killing and reduced colonization in silkworms. Apart from these, a comparative genomic analysis of Enterococcus faecalis EF-2001 was performed revealing that the strain does not harbor genes known for pathogenesis.

Current Status of Research Progress
Current Status of Research Progress

1: Research has progressed more than it was originally planned.

Reason

As planned previously, we performed the exoprotein profiling of the yjbH strain and revealed that in the absence of protease, the strains had more exoproteins while decreased surface proteins. Complementing the mutants with intact genes restored the wildtype phenotype. We further confirmed that yjbH is involved in killing ability of S. aureus both in silkworms and mice and revealed that yjbH contributes to oxidative stress tolerance in vivo as shown by increased virulence when a radical scavenger was administered to the silkworms prior to infection. A new infection model of Bacillus anthracis vaccine strain Sterne was established using silkworms as model animal. Live bacteria were required for silkworm killing. Using florescent protein-expressing B. anthracis, we showed the progression in proliferation of bacteria in silkworm hemolymph. We showed that the infection can be cured by administration of clinically used antibiotics into the infected larvae. The mutants of B. anthracis with disruption in genes of known virulence factors atxA, pagA and lef had reduced silkworm-killing ability and reduced colonization in silkworm hemolymph, suggesting that silkworms can be used as suitable animal model of B. anthracis infection.

Strategy for Future Research Activity

In the next period, we plan to take further our study of understanding the virulence mechanism of Bacillus cereus group of Gram-positive bacteria using silkworms. Functions of many genes are not yet characterized which might have roles in pathogenesis. To uncover the novel genes involved in virulence of the bacteria, we plan to utilize silkworm as a model animal to assess virulence of different gene disrupted mutants. In addition, we plan to perform in vivo RNA-seq analysis in silkworms to get an insight into host and pathogen interaction during infection condition. Genes that are expressed highly will be selected and the candidate genes will then be further analyzed to find their role in virulence of the pathogen.

Causes of Carryover

I was able to use existing regents and equipment for the experiments in this term. In the next fiscal year, we plan to utilize silkworm as a model animal to assess virulence of Bacillus cereus group of Gram-positive bacteria and extend this study beyond Staphylococcus aureus.

  • Research Products

    (16 results)

All 2021 2020 Other

All Int'l Joint Research (5 results) Journal Article (10 results) (of which Int'l Joint Research: 10 results,  Peer Reviewed: 9 results,  Open Access: 10 results) Presentation (1 results)

  • [Int'l Joint Research] University of Veterinary Medicine(オーストリア)

    • Country Name
      AUSTRIA
    • Counterpart Institution
      University of Veterinary Medicine
  • [Int'l Joint Research] Columbia University Medical Center(米国)

    • Country Name
      U.S.A.
    • Counterpart Institution
      Columbia University Medical Center
  • [Int'l Joint Research] Justus-Liebig-University Giessen(ドイツ)

    • Country Name
      GERMANY
    • Counterpart Institution
      Justus-Liebig-University Giessen
  • [Int'l Joint Research] Sustainable Study and Research Institute/Patan Academy of Health Sciences/Sahid Gangalal National Heart Center(ネパール)

    • Country Name
      NEPAL
    • Counterpart Institution
      Sustainable Study and Research Institute/Patan Academy of Health Sciences/Sahid Gangalal National Heart Center
  • [Int'l Joint Research] Tribhuvan University Teaching Hospital(ネパール)

    • Country Name
      NEPAL
    • Counterpart Institution
      Tribhuvan University Teaching Hospital
  • [Journal Article] Complete genome sequence and comparative genomic analysis of Enterococcus faecalis EF-2001, a probiotic bacterium2021

    • Author(s)
      Panthee Suresh、Paudel Atmika、Hamamoto Hiroshi、Ogasawara Akihiko Ano、Iwasa Toshihiro、Blom Jochen、Sekimizu Kazuhisa
    • Journal Title

      Genomics

      Volume: 113 Pages: 1534~1542

    • DOI

      10.1016/j.ygeno.2021.03.021

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] YjbH regulates virulence genes expression and oxidative stress resistance in Staphylococcus aureus2021

    • Author(s)
      Paudel Atmika、Panthee Suresh、Hamamoto Hiroshi、Grunert Tom、Sekimizu Kazuhisa
    • Journal Title

      Virulence

      Volume: 12 Pages: 470~480

    • DOI

      10.1080/21505594.2021.1875683

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Novel chromosomal insertions of ISEcp1-blaCTX-M-15 and diverse antimicrobial resistance genes in Zambian clinical isolates of Enterobacter cloacae and Escherichia coli2021

    • Author(s)
      Misheck Shawa, Yoshikazu Furuta, Gillan Mulenga, Maron Mubanga, Evans Mulenga, Tuvshinzaya Zorigt, Christone Kaile, Manyando Simbotwe, Atmika Paudel, Bernard Hang’ombe, Hideaki HIGASHI
    • Journal Title

      BMC Antimicrobial Resistance & Infection Control

      Volume: accepted Pages: in press

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Large-Scale Screening and Identification of Novel Pathogenic Staphylococcus aureus Genes Using a Silkworm Infection Model2020

    • Author(s)
      Atmika Paudel, Hiroshi Hamamoto, Suresh Panthee, Yasuhiko Matsumoto, Kazuhisa Sekimizu
    • Journal Title

      The Journal of infectious diseases

      Volume: 221 Pages: 1795-1804

    • DOI

      10.1093/infdis/jiaa004

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A simple artificial diet available for research of silkworm disease models2020

    • Author(s)
      Atmika Paudel, Suresh Panthee, Hiroshi Hamamoto, Kazuhisa Sekimizu
    • Journal Title

      Drug Discoveries & Therapeutics

      Volume: 14 Pages: 177-180

    • DOI

      10.5582/ddt.2020.03061

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] COVID-19: the current situation in Nepal2020

    • Author(s)
      Bimala Panthee, Saraswati Dhungana, Nirmal Panthee, Atmika Paudel, Saroj Gyawali, Suresh Panthee
    • Journal Title

      New microbes and new infections

      Volume: 37 Pages: 100737

    • DOI

      10.1016/j.nmni.2020.100737

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The Role of Amino Acid Substitution in HepT Toward Menaquinone Isoprenoid Chain Length Definition and Lysocin E Sensitivity in Staphylococcus aureus2020

    • Author(s)
      Suresh Panthee, Atmika Paudel, Hiroshi Hamamoto, Anne-Catrin Uhlemann, Kazuhisa Sekimizu
    • Journal Title

      Frontiers in microbiology

      Volume: 11 Pages: 2076

    • DOI

      10.3389/fmicb.2020.02076

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Discovery of gramicidin A analogues with altered activities by multidimensional screening of a one-bead-one-compound library2020

    • Author(s)
      Yuri Takada, Hiroaki Itoh, Atmika Paudel, Suresh Panthee, Hiroshi Hamamoto, Kazuhisa Sekimizu, Masayuki Inoue
    • Journal Title

      Nature communications

      Volume: 11 Pages: 4935

    • DOI

      10.1038/s41467-020-18711-2

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Clinical and epidemiological features of COVID-19 deaths in Nepal2020

    • Author(s)
      Bimala Panthee, Saraswati Dhungana, Nirmal Panthee, Saroj Gyawali, Atmika Paudel, Suresh Panthee
    • Journal Title

      New Microbes and New Infections

      Volume: 38 Pages: 100797

    • DOI

      10.1016/j.nmni.2020.100797

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Serum proteins potentiate therapeutic efficacy of lysocin E against S. aureus2020

    • Author(s)
      Hiroshi Hamamoto, Suresh Panthee, Atmika Paudel, Kenichi Ishii, Jyunichiro Yasukawa, Su Jie, Hiroaki Itoh, Kotaro Tokumoto, Masayuki Inoue, Kazuhisa Sekimizu
    • Journal Title

      ResearchSquare

      Volume: NA Pages: NA

    • Open Access / Int'l Joint Research
  • [Presentation] Cryptococcus neoformans の病原性因子の網羅的探索2020

    • Author(s)
      浜本 洋 、石島 早苗、スレス パンシー、アトミカ パウデル、関水 和久
    • Organizer
      第64回日本医真菌学会総会・学術集会

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Published: 2021-12-27  

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