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2020 Fiscal Year Annual Research Report

Micro-scale, in-vivo structural and functional tomography of rodent habenula using polarization-sensitive optical coherence tomography

Research Project

Project/Area Number 19K20674
Research InstitutionHiroshima University

Principal Investigator

カサラゴッド デイーパカマス  広島大学, 医系科学研究科(医), 助教 (40773908)

Project Period (FY) 2019-04-01 – 2021-03-31
Keywordsoptical imaging
Outline of Annual Research Achievements

Habenula is a tiny anatomical structure that links the forebrain to the midbrain and acts as a critical neuroanatomical hub that connects and regulates pathways associated with a range of behaviors including reproductive behaviors, central pain processing, nutrition, sleep-wake cycles, stress responses, and learning with lateral and medial habenula showing differences in connectivity and function. The proposed research aimed at developing a deep tissue optical imaging tool based on polarization sensitive-optical coherence tomography(PS-OCT)for small animal brain imaging in-vivo. The focus was to develop an imaging tool for volumetric assessment of small brain structures like habenula with high resolution. However, due to initial technical difficulties in designing the PS-OCT system due to low light coupling efficiency, the focus was directed towards taking a alternative approach to develop a different optical tool towards studying habenula. This novel tool is a 3D fluorescence microscope using deep ultraviolet light which allows for block-face imaging on thick block of tissue samples. A preprint based on the prototypical fluorescence microscopy for 3d imaging of habenula was submitted and a peer reviewed submission is under preparation. A peer-reviewed conference proceeding in information science relating to the theoretical idea towards publishing findable brain imaging data was also submitted.

  • Research Products

    (6 results)

All 2021 2020

All Journal Article (2 results) (of which Int'l Joint Research: 2 results,  Open Access: 1 results,  Peer Reviewed: 1 results) Presentation (4 results) (of which Int'l Joint Research: 1 results)

  • [Journal Article] Semantic Web Oriented Approaches for Smaller Communities in Publishing Findable Datasets2021

    • Author(s)
      N Thalhath, M Nagamori, T Sakaguchi, D Kasaragod, S Sugimoto
    • Journal Title

      Metadata and Semantic Research

      Volume: - Pages: 234-242

    • DOI

      10.1007/978-3-030-71903-6_23

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Deep ultraviolet light based wide-field fluorescence microscope for brain imaging2020

    • Author(s)
      D Kasaragod, M Zhu, H Terai, K Kawakami, H Aizawa
    • Journal Title

      bioRxiv

      Volume: - Pages: -

    • DOI

      10.1101/2020.10.27.342345

    • Open Access / Int'l Joint Research
  • [Presentation] A simplified optical scheme for high resolution serial block-face fluorescence microscopy for 3-dimensional morphometry of rodent brains2021

    • Author(s)
      D Kasaragod, M Zhu, H Aizawa
    • Organizer
      Focus on Microscopy - 2021 (Online)
  • [Presentation] Deep ultraviolet based serial block-face imaging for 3-dimensional morphological assessment of the rodent brains2021

    • Author(s)
      D Kasaragod, M Zhu, H Aizawa
    • Organizer
      Optics and Photonics International Congress -The 7th Biomedical Imaging and Sensing Conference (Online)
    • Int'l Joint Research
  • [Presentation] Wide-field serial block-face fluorescence microscope using deep ultraviolet light for whole-brain imaging2020

    • Author(s)
      D Kasaragod, M Zhu, H Takemoto, H Aizawa
    • Organizer
      Neuro2020- Japan Neuroscience Society Annual Meeting (Online)
  • [Presentation] Semantic Web oriented approaches for smaller communities in publishing findable datasets2020

    • Author(s)
      N Thalhath, M Nagamori, T Sakaguchi, D Kasaragod, S Sugimoto
    • Organizer
      Metadata and Semantic Research - 2020 (Online)

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Published: 2021-12-27  

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