• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to project page

2019 Fiscal Year Annual Research Report

Adaptive optics approach for high-throughput, high-resolution cryo-electron microscopy of biological macromolecules and complexes

Research Project

Project/Area Number 19K21176
Allocation TypeMulti-year Fund
Research InstitutionThe University of Tokyo

Principal Investigator

Danev Radostin  東京大学, 大学院医学系研究科(医学部), 教授 (50415931)

Project Period (FY) 2019-04-01 – 2020-03-31
Keywordscryo-electron microscopy / molecular structure
Outline of Annual Research Achievements

The goal of this research was to improve the efficiency of electron cryo-microscopy (cryo-EM) experiments. Cryo-EM has become a fundamental method for high-resolution structure determination of biological macromolecules. However, to produce a high-quality result it requires acquisition of thousands of images from the sample. With previous methods this took several days. Cryo-EMs are expensive instruments. Reducing the time for data acquisition can speed up research and allow efficient use of research budgets. Previously, the typical throughput was ~1000 images/day. We developed and implemented a vastly improved “adaptive optics” method for automated image acquisition which increased the experimental throughput fivefold. The method uses optical shifting of the acquisition area, instead of the traditional mechanical stage movement, which saves significant amount of time. After development and testing of the new approach, we installed it on the main electron microscope of the new electron microscopy facility at the University of Tokyo. Our method became the standard automated data acquisition technique at the facility. We shared information about best practices and trained all experienced microscope users on its proper use. The data acquisition throughput increased to ~5500 images/day which enabled the acquisition of a complete dataset in one day. Consequently, the use efficiency of the facility was greatly improved, and this helped us and many other researchers to achieve outstanding high-resolution results in their molecular structural projects.

  • Research Products

    (10 results)

All 2020 2019

All Journal Article (5 results) (of which Int'l Joint Research: 5 results,  Peer Reviewed: 5 results) Presentation (5 results) (of which Int'l Joint Research: 2 results,  Invited: 4 results)

  • [Journal Article] Activation of the GLP-1 receptor by a non-peptidic agonist2020

    • Author(s)
      Zhao Peishen、Liang Yi-Lynn、Belousoff Matthew J.、[14 co-authors]、Danev Radostin、Sexton Patrick M.、Wootten Denise
    • Journal Title

      Nature

      Volume: 577 Pages: 432~436

    • DOI

      10.1038/s41586-019-1902-z

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Toward a Structural Understanding of Class B GPCR Peptide Binding and Activation2020

    • Author(s)
      Liang Yi-Lynn、Belousoff Matthew J.、Zhao Peishen、Koole Cassandra、Fletcher Madeleine M.、Truong Tin T.、Julita Villy、Christopoulos George、Xu H. Eric、Zhang Yan、Khoshouei Maryam、Christopoulos Arthur、Danev Radostin、Sexton Patrick M.、Wootten Denise
    • Journal Title

      Molecular Cell

      Volume: 77 Pages: 656~668.e5

    • DOI

      10.1016/j.molcel.2020.01.012

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Structure and Dynamics of Adrenomedullin Receptors AM1 and AM2 Reveal Key Mechanisms in the Control of Receptor Phenotype by Receptor Activity-Modifying Proteins2020

    • Author(s)
      Liang Yi-Lynn、Belousoff Matthew J.、Fletcher Madeleine M.、Zhang Xin、Khoshouei Maryam、Deganutti Giuseppe、Koole Cassandra、Furness Sebastian G. B.、Miller Laurence J.、Hay Debbie L.、Christopoulos Arthur、Reynolds Christopher A.、Danev Radostin、Wootten Denise、Sexton Patrick M.
    • Journal Title

      ACS Pharmacology & Translational Science

      Volume: 3 Pages: 263~284

    • DOI

      10.1021/acsptsci.9b00080

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Cryo-Electron Microscopy Methodology: Current Aspects and Future Directions2019

    • Author(s)
      Danev Radostin、Yanagisawa Haruaki、Kikkawa Masahide
    • Journal Title

      Trends in Biochemical Sciences

      Volume: 44 Pages: 837~848

    • DOI

      10.1016/j.tibs.2019.04.008

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Improved applicability and robustness of fast cryo-electron tomography data acquisition2019

    • Author(s)
      Eisenstein Fabian、Danev Radostin、Pilhofer Martin
    • Journal Title

      Journal of Structural Biology

      Volume: 208 Pages: 107~114

    • DOI

      10.1016/j.jsb.2019.08.006

    • Peer Reviewed / Int'l Joint Research
  • [Presentation] Phase plates in cryo-EM2019

    • Author(s)
      Radostin Danev
    • Organizer
      EMBL Cryo-EM in Industry and Academia workshop
    • Int'l Joint Research / Invited
  • [Presentation] Practical Performance of the Volta Phase Plate2019

    • Author(s)
      Radostin Danev
    • Organizer
      Gordon Research Conference on Three Dimensional Electron Microscopy
    • Int'l Joint Research
  • [Presentation] Cryo-EM of Membrane Proteins With and Without Phase Plates2019

    • Author(s)
      Radostin Danev
    • Organizer
      71st joint JSCB and PSSJ meeting
    • Invited
  • [Presentation] Cryo-EM of Membrane Receptors2019

    • Author(s)
      Radostin Danev
    • Organizer
      92nd annual meeting of the Japanese biochemical society
    • Invited
  • [Presentation] Performance Contributions of Energy Filtering and Phase Plates for Single Particle Analysis of Membrane Proteins2019

    • Author(s)
      Radostin Danev
    • Organizer
      NIPS EM Workshop 2019
    • Invited

URL: 

Published: 2021-01-27  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi