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2011 Fiscal Year Final Research Report

Development of single genome DNA methylation detection device for epigenetics analysis

Research Project

  • PDF
Project/Area Number 20241032
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Microdevices/Nanodevices
Research InstitutionNagoya University

Principal Investigator

BABA Yoshinobu  名古屋大学, 工学研究科, 教授 (30183916)

Co-Investigator(Renkei-kenkyūsha) TOKESHI Manabu  北海道大学, 工学研究院, 教授 (60311437)
KAJI Noritada  名古屋大学, 大学院・工学研究科, 准教授 (90402479)
OKAMOTO Yukihiro  名古屋大学, 革新ナノバイオデバイス研究センター, 特任講師 (50503918)
ZHANG Yong  名古屋大学, 工学研究科, 研究員 (40467329)
WANG Jun  名古屋大学, 工学研究科, 研究員 (30543532)
YASUI Takao  名古屋大学, 工学研究科, 助教 (00630584)
Project Period (FY) 2008 – 2011
Keywordsエピジェネティクス / マイクロ・ナノデバイス / DNA伸長 / 1分子計測
Research Abstract

We successfully developed novel DNA methylation analysis method. Our method elongates single DNA by flow or nanospace in the microfluidic device and detect methylation site with methylation point specific quantum-dots. Therefore, we need no troublesome procedures like PCR and can identify the location of methylation site as well as can detect methylation in single molecule level, which cannot attain by current methylation analysis method. These advantages would permit our method to be applied for medical diagnosis.

  • Research Products

    (16 results)

All 2012 2011 2010 2009 2008 Other

All Journal Article (6 results) (of which Peer Reviewed: 5 results) Presentation (5 results) Book (4 results) Remarks (1 results)

  • [Journal Article] How environmental solution condistion determine the compaction velocity of single DNA moleules2012

    • Author(s)
      Ken Hirano, Masatoshi Ichikawa, Tomomi Ishido, Mitsuru Ishikawa, Yoshinobu Baba, Kenichi Yoshikawa
    • Journal Title

      Nucleic Acids Research

      Volume: 40 Pages: 284-289

    • DOI

      DOI:10.1093/nar/gkr712

    • Peer Reviewed
  • [Journal Article] DNA Separation in Nanowall Array Chips2011

    • Author(s)
      T. Yasui, N. Kaji, R. Ogawa, S. Hashioka, M. Tokeshi, Y. Horiike and Y. Baba
    • Journal Title

      Anal. Chem

      Volume: 83 Pages: 6635-6640

    • DOI

      DOI:10.1021/ac201184t

    • Peer Reviewed
  • [Journal Article] Real-time observation of DNA comformational transitions at a single-molecule level by microfluidic devices2010

    • Author(s)
      Hiroshi Suzuki, Noritada Kaji, Yukihiro Okamoto, Manabu Tokeshi, Yoshinobu Baba
    • Journal Title

      Micro TAS 2010

      Pages: 1880-1882

    • URL

      http://www.rsc.org/binaries/LOC/2010/PDFs/Papers/640_0167.pdf

    • Peer Reviewed
  • [Journal Article] Size-selective growth and stabilization of small CdSe nanoparticles in aqueous solution2010

    • Author(s)
      Park, Yeon-Su ; Dmytruk, Andriy ; Dmitruk, Igor ; Kasuya, Atsuo ; Takeda, Motohiro ; Ohuchi, Noriaki ; Okamoto, Yukihiro ; Kaji, Noritada ; Tokeshi, Manabu ; Baba, Yoshinobu
    • Journal Title

      ACS Nano

      Volume: 4 Pages: 121-128

    • DOI

      DOI:10.1021/nn901570m

    • Peer Reviewed
  • [Journal Article] A single molecule analysis for the conformational transition of DNA using microfluidics2009

    • Author(s)
      Hiroshi Suzuki, Noritada Kaji, Yukihiro Okamoto, Manabu Tokeshi, Yoshinobu Baba
    • Journal Title

      Micro TAS 2009

      Pages: 827-829

    • Peer Reviewed
  • [Journal Article] Nuclease tolerant FRET probe based on DNA-quantum dot conjugation2008

    • Author(s)
      Daisuke Onoshima, Noritada Kaji, Manabu Tokeshi, Yoshinobu Baba
    • Journal Title

      Anal Sci

      Volume: 24 Pages: 181-183

    • URL

      https://www.jstage.jst.go.jp/article/analsci/24/2/24_2_181/_pdf

  • [Presentation] Nanobiodevice for single biomolecular and cellular analysis for cancer diagnosis and in vivo imaging for stem cell therapy2011

    • Author(s)
      Y. Baba
    • Organizer
      37th International Symposium on High-Performance Liquid Phase Separations and Related Techniques(HPLC 2011 Dalian)
    • Place of Presentation
      Dalian, China
    • Year and Date
      2011-10-08
  • [Presentation] Nanobiodevice for single biomolecular and cellular analysis for cancer diagnosis and in vivo imaging for stem cell therapy2011

    • Author(s)
      Y. Baba
    • Organizer
      2011 Gordon Research Conference on the Physics and Chemistry of Microfluidics
    • Place of Presentation
      Waterville Valley, USA
    • Year and Date
      2011-06-28
  • [Presentation] Microfluidic sensor for the detection of DNA or protein by hybridization-based fluorescence enhancement or immunoassay-based fluorescence quenching2010

    • Author(s)
      Jun Wang, Michihiko Aki, Daisuke Onoshima, Kenji Arinaga, Noritada Kaji, Manabu Tokeshi, Shozo Fujita, Naoki Yokoyama, Yoshinobu Baba
    • Organizer
      14th International Conference on Miniaturized Systems for Chemistry and Life Sciences(μTAS2010)
    • Place of Presentation
      Martiniplaza, Groningen, Netherlands
    • Year and Date
      20101003-07
  • [Presentation] マイクロフルイディクスを利用したDNA構造転移の1分子解析2009

    • Author(s)
      鈴木博詞,加地範匡、岡本行広,渡慶次学、馬場嘉信
    • Organizer
      日本化学会第89春季年会
    • Place of Presentation
      日本大学理工学部船橋キャンパス
    • Year and Date
      20090327-30
  • [Presentation] In real-time monitoring of conformational transition of DNA at a single molecule level in microfluidic devices2008

    • Author(s)
      Kentaro Fujiyoshi, Noritada Kaji, Manabu Tokeshi, Yoshinobu Baba
    • Organizer
      The 12th international conference on miniaturized systems for chemistry and life sciences(uTAS2008)
    • Place of Presentation
      San Diego, CA, USA
    • Year and Date
      20081012-16
  • [Book] 量子ドットおよび無機蛍光体,蛍光イメージング・MRIプローブの開発2011

    • Author(s)
      馬場嘉信
    • Total Pages
      8
    • Publisher
      CMC出版
  • [Book] バイオチップ実用化ハンドブック2010

    • Author(s)
      加地範匡、岡本行広、渡慶次学、馬場嘉信
    • Total Pages
      5
    • Publisher
      エヌ・ティー・エス
  • [Book] 医療に貢献するナノバイオ技術,遺伝子医学Mook別「ますます重要になる細胞周辺環境の科学技術」2009

    • Author(s)
      岡本行広、加地範匡、渡慶次学,馬場嘉信
    • Total Pages
      8
    • Publisher
      メディカルドゥ
  • [Book] ナノメディシン(ナノバイオイメージング・計測による予防医療)2008

    • Author(s)
      馬場嘉信
    • Total Pages
      11
    • Publisher
      オーム社
  • [Remarks]

    • URL

      http://www.apchem.nagoya-u.ac.jp/III-2/baba-ken/index.html

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Published: 2013-07-31  

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