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2011 Fiscal Year Final Research Report

Study of ribosome maturation mechanism by the structural analysis of Rat-U13snoRNA complex

Research Project

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Project/Area Number 20247007
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionHokkaido University

Principal Investigator

TANAKA Isao  北海道大学, 大学院・先端生命科学研究院, 特任教授 (70093052)

Co-Investigator(Kenkyū-buntansha) YAO Min  北海道大学, 大学院・先端生命科学研究院, 教授 (40311518)
Co-Investigator(Renkei-kenkyūsha) SUZUKI Tsutomu  東京大学, 大学院・工学系研究科, 教授 (20292782)
Project Period (FY) 2008 – 2011
KeywordsX線結晶構造解析 / RNA-タンパク質相互作用 / snoRNA / リボソーム生合成 / アセチル化
Research Abstract

Using the proteins from M.musculus (mRAT) and from S.cerevisiae RAT (yRAT), it has been directly proved that a eucaryotic homolog of E. coli tRNA acetyltransferase TmcA (RAT) has the activity of transferring the acetyl group to the specific site of 18S rRNA. It has also been proved that these proteins have the ATPase activity. As a result of crystallization screening, we found that the crystals of RAT from S.cerevisiae of which C-terminal 123 residues are truncated (deltaC123-yRAT) diffract X-rays to 9 A resolution at BL32XU, SPring-8.

  • Research Products

    (42 results)

All 2012 2011 2010 2009 2008 Other

All Journal Article (9 results) (of which Peer Reviewed: 9 results) Presentation (32 results) Remarks (1 results)

  • [Journal Article] Archaeal ribosomal stalk protein interacts with translation factors in a nucleotide-independent manner via its conserved C terminus, Proc.Natl2012

    • Author(s)
      Nomura N, Honda T, Baba K, Naganuma T, Tanzawa T, Arisaka F, Noda M, Uchiyama S, Tanaka I, Yao M, Uchiumi T
    • Journal Title

      Acad. Sci. USA

      Volume: 109 Pages: 3748-3753

    • DOI

      doi:10.1073/pnas.1112934109

    • Peer Reviewed
  • [Journal Article] The binding mechanism of eIF2β with its partner proteins, eIF5 and eIF2Bε, Biochem2012

    • Author(s)
      Gai Z, Kitagawa Y, Tanaka Y, Shimizu N, Komoda K, Tanaka I, Yao M
    • Journal Title

      Biophys. Res. Commun

      Volume: 423 Pages: 515-519

    • DOI

      doi:10.1016/j.bbrc.2012.05.155

    • Peer Reviewed
  • [Journal Article] Crystallization and preliminary X-ray structure analysis of human ribosomal protein L30e2011

    • Author(s)
      Kawaguchi A, Ose T, Yao M, Tanaka I
    • Journal Title

      Acta Cryst

      Volume: F67 Pages: 1516-1518

    • DOI

      doi:10.1107/S1744309111045131

    • Peer Reviewed
  • [Journal Article] Two distinct regions in Staphylococcus aureus GatCAB guarantee accurate tRNA recognition, Nucl2010

    • Author(s)
      Nakamura A, Sheppard K, Yamane J, Yao M, Soll D, Tanaka I
    • Journal Title

      Acid Res

      Volume: 38 Pages: 672-682

    • DOI

      doi:10.1093/nar/gkp955

    • Peer Reviewed
  • [Journal Article] Structural Basis for Translation Factor Recruitment to the Eukaryotic / Archaeal Ribosomes, J2010

    • Author(s)
      Naganuma T, Nomura N, Yao M, Mochizuki M, Uchiumi T, Tanaka I
    • Journal Title

      Biol. Chem

      Volume: 285 Pages: 4747-4756

    • DOI

      doi:10.1074/jbc.M109.068098

    • Peer Reviewed
  • [Journal Article] The structure of alanyl-tRNA synthetase with editing domain, Proc2009

    • Author(s)
      Sokabe M, Ose T, Nakamura A, Tokunaga K, Nureki O, Yao M, Tanaka I
    • Journal Title

      Natl. Acad. Sci. USA

      Volume: 106 Pages: 11028-11033

    • DOI

      doi:10.1073/pnas.0904645106

    • Peer Reviewed
  • [Journal Article] RNA helicase module in an acetyltransferase that modifies a specific tRNA anticodon2009

    • Author(s)
      Chimnaronk S, Suzuki T, Manita T, Ikeuchi Y, Yao M, Suzuki T, Tanaka I
    • Journal Title

      The EMBO J

      Volume: 28 Pages: 1362-1373

    • DOI

      doi:10.1038/emboj.2009.69

    • Peer Reviewed
  • [Journal Article] Deduced RNA binding mechanism of ThiI based on structural and binding analyses of a minimal RNA ligand2009

    • Author(s)
      Tanaka Y, Yamagata S, Kitago Y, Yamada Y, Chimnaronk S, Yao M, Tanaka I
    • Journal Title

      RNA

      Volume: 15 Pages: 1498-1506

    • DOI

      doi:10.1261/rna.1614709

    • Peer Reviewed
  • [Journal Article] Snapshots of Dynamics in Synthesizing N6-Isopentenyladenosine at the tRNA Anticodon2009

    • Author(s)
      Chimnaronk S, Forouhar F, Sakai J, Yao M, Tron C-M, Atta M, Fontecave M, Hunt J-F, Tanaka I
    • Journal Title

      Biochemistry

      Volume: 48 Pages: 5057-5065

    • DOI

      doi:10.1021/bi900337d

    • Peer Reviewed
  • [Presentation] The recognition manner of eIF2β with its partner proteins eIF5 and eIF2Bε, Sapporo Symposium on Advanced Protein Crystallography2012

    • Author(s)
      Gai Z, Kitagawa Y, Tanaka Y, Shimizu N, Komoda K, Yao M, Tanaka I
    • Organizer
      Faculty of Advanced Life Science
    • Place of Presentation
      Hokkaido University (Sapporo, Japan)
    • Year and Date
      2012-03-17
  • [Presentation] Cloning, expression and purification of Eukaryotic ribosome biogenesis factor Rpf2-Rrs1 complex, Sapporo Symposium on Advanced Protein Crystallography2012

    • Author(s)
      Asano N, Nakamura A, Yao M, Tanaka I
    • Organizer
      Faculty of Advanced Life Science
    • Place of Presentation
      Hokkaido University (Sapporo, Japan)
    • Year and Date
      2012-03-17
  • [Presentation] Structural and functional analysis of ribosomal RNA modification enzyme RrcA, Sapporo Symposium on Advanced Protein Crystallography2012

    • Author(s)
      Kawauchi H, Tanaka Y, Ito S, Suzuki T, Suzuki T, Suzuki T, Yao M, Tanaka I
    • Organizer
      Faculty of Advanced Life Science
    • Place of Presentation
      Hokkaido University (Sapporo, Japan)
    • Year and Date
      2012-03-17
  • [Presentation] Mechanistic analysis of the 21st amino acid incorporation system in eukaryotes, Sapporo Symposium on Advanced Protein Crystallography2012

    • Author(s)
      Kawaguchi A, Ose T, Yao M, Tanaka I
    • Organizer
      Faculty of Advanced Life Science
    • Place of Presentation
      Hokkaido University (Sapporo, Japan)
    • Year and Date
      2012-03-17
  • [Presentation] Crystal structure analysis of tRNA acetylation enzyme from Sulfolobus solfataricus, Sapporo Symposium on Advanced Protein Crystallography2012

    • Author(s)
      Kurihashi T, Tanaka Y, Ito S, Suzuki T, Suzuki T, Yao M, Tanaka I
    • Organizer
      Faculty of Advanced Life Science
    • Place of Presentation
      Hokkaido University (Sapporo, Japan)
    • Year and Date
      2012-03-17
  • [Presentation] 古細菌由来tRNAアセチル基転移酵素の結晶構造解析2012

    • Author(s)
      栗橋泰子,田中良和,伊藤理,鈴木建夫,鈴木勉,姚閔,田中勲
    • Organizer
      2011年度日本生物物理学会北海道支部例会
    • Place of Presentation
      旭川市民文化会館(旭川市)
    • Year and Date
      2012-03-06
  • [Presentation] The Recognition Mechanism of eIF2β for its partner proteins eIF5 and eIF2Bε2011

    • Author(s)
      Gai Z,Kitagawa Y,Yao M,Ose T,Tanaka Y,Tanaka I
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      兵庫県立大学姫路書写キャンパス(姫路市)
    • Year and Date
      20110916-18
  • [Presentation] Structure analysis of eukaryotic translation initiation factor complex 5B-1A2011

    • Author(s)
      Yao M, Zheng A, Tanaka I
    • Organizer
      XXII Congress and General Assembly of the International, Union of Crystallography (IUCr2011)
    • Place of Presentation
      Palacio Municipal de Congresos de Madrid (Madrid, Spain)
    • Year and Date
      20110822-23
  • [Presentation] Structure Analysis of Eukaryotic Translation Initiation Factors 5B and 1A Complex2011

    • Author(s)
      Zheng A, Ose T, Tanaka Y, Tanaka I, Yao M
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      ホテル阪急エキスポパーク(吹田市)
    • Year and Date
      20110607-09
  • [Presentation] 5SrRNAの90S前駆体への取り込み機構の解明-Rpf2/Rrs1二者複合体の構造解析に向けた研究-2011

    • Author(s)
      朝野希美,中村彰良,姚閔,田中勲
    • Organizer
      生物物理若手研究者忘年会セミナー
    • Place of Presentation
      北海道大学理学部(札幌市)
    • Year and Date
      2011-12-21
  • [Presentation] 真核生物rRNA修飾酵素RrcAの構造機能解析2011

    • Author(s)
      河内宏樹,伊藤理,鈴木干城,田中良和,鈴木建夫,鈴木勉,姚閔,田中勲
    • Organizer
      生物物理若手研究者忘年会セミナー
    • Place of Presentation
      北海道大学理学部(札幌市)
    • Year and Date
      2011-12-21
  • [Presentation] The Recognition Mechanism of eIF2β-NTD for its partner proteins eIF5 and eIF2Bε-CTD2011

    • Author(s)
      Gai Z, Kitagawa Y, Ose T, Tanaka Y, Yao M, Tanaka I
    • Organizer
      International Fusion- Bioscience Symposium for young researchers
    • Place of Presentation
      Faculty of Science, Hokkaido University (Sapporo, Japan)
    • Year and Date
      2011-03-04
  • [Presentation] Structure Analysis of Eukaryotic Translation Initiation Factors 5B and 1A Complex2011

    • Author(s)
      Zheng A, Yao M, Ose T, Tanaka I
    • Organizer
      International Fusion-Bioscience Symposium for young researchers
    • Place of Presentation
      Faculty of Science, Hokkaido University (Sapporo, Japan)
    • Year and Date
      2011-03-04
  • [Presentation] 部分RNAの結晶構造解析から推察されたtRNAチオ化修飾酵素ThiIのtRNA認識機構2010

    • Author(s)
      田中良和,姚閔,田中勲
    • Organizer
      第34回蛋白質と酵素の構造と機能に関する九州シンポジウム
    • Place of Presentation
      玄海ロイヤルホテル(宗像市)
    • Year and Date
      20100909-11
  • [Presentation] リボソームの翻訳因子作用中心に位置する動的タンパク質複合体2010

    • Author(s)
      内海利男,長沼孝雄,野村直子,望月正弘,馬場健太朗,姚閔,田中勲
    • Organizer
      第10回日本蛋白質科学会年会ノーベル賞特別シンポジウム蛋白質合成装置リボソームの最新像
    • Place of Presentation
      札幌コンベンションセンター(札幌市)
    • Year and Date
      20100616-18
  • [Presentation] 60Sリボソーム成熟に関わるRia1-Sdo1複合体の相互作用解析2010

    • Author(s)
      中村彰良,渥海春佳,田中良和,姚閔,田中勲
    • Organizer
      第10回日本蛋白質科学会年会
    • Place of Presentation
      札幌コンベンションセンター(札幌市)
    • Year and Date
      20100616-18
  • [Presentation] 古細菌型GatCABと真正細菌型GatCABの比較2010

    • Author(s)
      周倩,中村彰良,朝野希美,姚閔,田中勲
    • Organizer
      第10回日本蛋白質科学会年会
    • Place of Presentation
      札幌コンベンションセンター(札幌市)
    • Year and Date
      20100616-18
  • [Presentation] 古細菌リボソームGTPaseセンターの機能・構造解析2010

    • Author(s)
      三輪達明,野村直子,長沼孝雄,内海利男,姚閔,田中勲
    • Organizer
      第10回日本蛋白質科学会年会
    • Place of Presentation
      札幌コンベンションセンター(札幌市)
    • Year and Date
      20100616-18
  • [Presentation] Structure analysis of ribosomal protein L30 to understand the interaction to SECIS2010

    • Author(s)
      Kawaguchi A, Ose T, Nakamura A, Kita S, Yao M, Tanaka I
    • Organizer
      The 9th International Symposium on Selenium in Biology and Medicine (Selenium 2010)
    • Place of Presentation
      Kyoto University (Kyoto, Japan)
    • Year and Date
      20100531-0604
  • [Presentation] リボソームGTPaseセンターを構成するストークと翻訳因子の相互作用解析2009

    • Author(s)
      野村直子,長沼孝雄,姚閔,内海利男,田中勲
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Year and Date
      20091209-12
  • [Presentation] Structural basis for translation factor recruitment to the eukaryotic/archaeal ribosomes, Taiwan-Japan Joint Seminar on Crystallography and IPR Seminar2009

    • Author(s)
      Min Yao
    • Organizer
      Institute for Protein Research
    • Place of Presentation
      Osaka University (Suita, Japan)
    • Year and Date
      20091207-09
  • [Presentation] Structural basis for translation factor recruitment to the eukaryotic/archaeal ribosomes2009

    • Author(s)
      Yao M, Naganuma T, Nomura N, Mochizuki M, Uchiumi T, Tanaka I
    • Organizer
      The 1st Hokkaido University - Academia Sinica Joint Symposium and The 7th Symposium for Future Drug Discovery and Medical Care
    • URL

      7-8October (2009), Conference Hall

    • Place of Presentation
      Conference Hall,Hokkaido University (Sapporo, Japan)
    • Year and Date
      20091007-08
  • [Presentation] The structure of the archaeal ribosomal stalk complex2009

    • Author(s)
      Yao M, Naganuma T, Nomura N, Mochizuki M, Uchiumi T, Tanaka I
    • Organizer
      insights into the function of translation factor recruitment in eukarya/archaea mode, Ribosome Synthesis Meeting
    • Place of Presentation
      Kolpinghaus Regensburg (Regensburg, Germany)
    • Year and Date
      20090826-30
  • [Presentation] tRNAチオ化修飾酵素ThiIのRNA認識機構の解析2009

    • Organizer
      第11回日本RNA学会年会
    • Place of Presentation
      朱鷺メッセ・新潟コンベンションセンター(新潟市)
    • Year and Date
      20090727-29
  • [Presentation] リボソームGTPaseセンターにおけるストーク複合体の機能解析2009

    • Author(s)
      野村直子,長沼孝雄,望月正弘,姚閔,内海利男,田中勲
    • Organizer
      第11回日本RNA学会年会
    • Place of Presentation
      朱鷺メッセ・新潟コンベンションセンター(新潟市)
    • Year and Date
      20090727-29
  • [Presentation] The structure of archaeal ribosomal stalk complex2009

    • Author(s)
      Tanaka I, Naganuma T, Nomura N,Mochizuki M, Yao M, Uchiumi T
    • Organizer
      insights into the function of GTPase center,VIII European Symposium of The Protein Society
    • Place of Presentation
      Kongresshaus Zurich (Zurich, Switzerland)
    • Year and Date
      20090614-18
  • [Presentation] アラニルtRNA合成酵素の結晶構造より提唱されたtRNA再結合モデル2009

    • Author(s)
      徳永啓太,曽我部正彰,尾瀬農之,中村彰良,濡木理,姚閔,田中勲
    • Organizer
      第9回日本蛋白質科学会年会
    • Place of Presentation
      熊本全日空ホテルニュースカイ(熊本市)
    • Year and Date
      20090520-22
  • [Presentation] 翻訳駆動エネルギー生産部位「ストーク」の構造機能解析2009

    • Author(s)
      田中勲,長沼孝雄,野村直子,望月正弘,姚閔,内海利男
    • Organizer
      日本農芸化学会2009年度大会
    • Place of Presentation
      福岡国際会議場(福岡市)
    • Year and Date
      20090327-29
  • [Presentation] Pyrococcus horikoshii由来アラニルtRNA合成酵素の結晶構造2009

    • Author(s)
      徳永啓太,曽我部正彰,尾瀬農之,中村彰良,濡木理,姚閔,田中勲
    • Organizer
      第26回PFシンポジウム
    • Place of Presentation
      つくば国際会議場(つくば市)
    • Year and Date
      20090324-25
  • [Presentation] アラニルtRNA合成酵素の結晶構造より提唱された基質認識機構2009

    • Author(s)
      徳永啓太,曽我部正彰,尾瀬農之,中村彰良,濡木理,姚閔,田中勲
    • Organizer
      北海道大学第2回若手研究者交流会
    • Place of Presentation
      北海道大学学術交流会館(札幌市)
    • Year and Date
      2009-07-17
  • [Presentation] リボソームGTPaseセンターを構成するストークタンパク質複合体,BMB20082008

    • Author(s)
      内海利男,長沼孝雄,野村直子,三好智博,姚閔,田中勲
    • Organizer
      第31回日本分子生物学会年会・第81回日本生化学会大会合同大会
    • Place of Presentation
      神戸ポートアイランド(神戸市)
    • Year and Date
      20081209-12
  • [Presentation] The structure of archaeal ribosomal stalk complex2008

    • Author(s)
      Tanaka I, Naganuma T, Yao M, Uchiumi T
    • Organizer
      XXI Congress of the International Union of Crystallography (IUCr2008)
    • Place of Presentation
      Osaka InternationalConvention Center (Osaka, Japan)
    • Year and Date
      20080823-31
  • [Remarks]

    • URL

      http://altair.sci.hokudai.ac.jp/g6/

URL: 

Published: 2014-08-29  

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