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2010 Fiscal Year Final Research Report

Analysis of molecular assemblage in lipid bilayers using bicelles

Research Project

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Project/Area Number 20310132
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Living organism molecular science
Research InstitutionOsaka University

Principal Investigator

MATSUMORI Nobuaki  Osaka University, 大学院・理学研究科, 准教授 (50314357)

Co-Investigator(Kenkyū-buntansha) MURATA Michio  大阪大学, 大学院・理学研究科, 教授 (40183652)
Project Period (FY) 2008 – 2010
Keywordsバイセル / 脂質二重膜 / 脂質ラフト / スフィンゴミエリン / アンフィジノール / 動的光散乱 / 立体配座
Research Abstract

Bicelles are lipid aggregates composed of long-chain phospholipid and short-chain one. Since bicelles have true bilayer portions, they are used as a membrane model. In this study, we developed a methodology to analyze the structure of membrane associated bioactive compounds using bicelles. We first applied the methodology to antifungal compound amphidinol, and successfully determined its structure in membrane and proposed the mechanism of its biological activity. Then we analyzed the structure of sphingomyelin, which draws a lot of attention as a component of lipid rafts, and revealed molecular basis of raft formation.

  • Research Products

    (42 results)

All 2011 2010 2009 2008 Other

All Journal Article (27 results) (of which Peer Reviewed: 27 results) Presentation (12 results) Book (2 results) Remarks (1 results)

  • [Journal Article] Synthesis of 6-F-ergosterol and its influence on membrane-permeabilization of amphotericin B and amphidinol 3.2011

    • Author(s)
      Y. Kasai, N. Matsumori, H. Ueno, K. Nonomura, S. Yano, M. Murata, T. Oishi
    • Journal Title

      Org.Biomol.Chem. 9

      Pages: 1437-1442

    • Peer Reviewed
  • [Journal Article] Conformations of spermine in ATP complex : the structural basis for weak bimolecular interactions of major cellular electrolytes.2011

    • Author(s)
      K. Maruyoshi, T. Yamaguchi, T. Demura, N. Matsumori, T. Oishi, M. Murata
    • Journal Title

      Chem.Eur.J. 17

      Pages: 4788-4795

    • Peer Reviewed
  • [Journal Article] Structural reevaluations of amphidinol 3, a potent antifungal compound from dinoflagellate.2011

    • Author(s)
      R.T. Swasono, M. Kanemoto, N. Matsumori, T. Oishi, M. Murata
    • Journal Title

      Heterocycles 82

      Pages: 1359-1369

    • Peer Reviewed
  • [Journal Article] Channels formed by amphotericin B covalent dimers exhibit rectification.2011

    • Author(s)
      M. Hirano, Y. Takeuchi, N. Matsumori, M. Murata, T. Ide
    • Journal Title

      J.Membr.Biol. 240

      Pages: 159-164

    • Peer Reviewed
  • [Journal Article] Lysine proximity significantly affects glycation of lysine-containing collagen model peptides.2011

    • Author(s)
      A. Kitamura, K. Matsui, K. Konoki, N. Matsumori, M. Murata, T. Kawakami, S. Aimoto.
    • Journal Title

      Bioorg.Med.Chem. 19

      Pages: 2125-2129

    • Peer Reviewed
  • [Journal Article] Sterol effect on interaction between amphidinol 3 and liposomal membrane as evidenced by surface plasmon resonance.2010

    • Author(s)
      R.T. Swasono, R. Mouri, N.A. Morsy, N. Matsumori, T. Oishi, M. Murata
    • Journal Title

      Bioorg.Med.Chem.Lett. 20

      Pages: 2215-2218

    • Peer Reviewed
  • [Journal Article] Identification of Ras Superfamily Proteins as Yessotoxin Binding Target from Blood Cell Membranes.2010

    • Author(s)
      S. Ujihara, T. Oishi, R. Mouri, R. Tamate, K. Konoki, N. Matsumori, M. Murata, Y. Oshima, N. Sugiyama, M. Tomita, Y. Ishihama
    • Journal Title

      Bioorg.Med.Chem.Lett. 20

      Pages: 6643-6646

    • Peer Reviewed
  • [Journal Article] 3D structures of membrane-associated small molecules as determined in isotropic bicelles.2010

    • Author(s)
      N. Matsumori, M. Murata
    • Journal Title

      Nat.Prod.Rep. 27

      Pages: 1480-1492

    • Peer Reviewed
  • [Journal Article] Conformational change of spermidine upon interacting with ATP in aqueous solution.2009

    • Author(s)
      K. Maruyoshi, K. Nonaka, T. Sagane, T. Demura, T. Yamaguchi, N. Matsumori, T. Oishi, M. Murata
    • Journal Title

      Chem.Eur.J. 15

      Pages: 1618-1626

    • Peer Reviewed
  • [Journal Article] Synthesis of 25-13C-amphotericin B methyl ester : a molecular probe for solid-state NMR measurements.2009

    • Author(s)
      N. Matsushita, Y. Matsuo, H. Tsuchikawa, N. Matsumori, M. Murata, T. Oishi
    • Journal Title

      Chem.Lett. 38

      Pages: 114-115

    • Peer Reviewed
  • [Journal Article] Surface plasmon resonance-based detection of ladder-shaped polyethers by competitive binding method.2009

    • Author(s)
      R. Mouri, T. Oishi, K. Torikai, S. Ujihara, N. Matsumori, M. Murata, Y. Oshima
    • Journal Title

      Bioorg.Med.Chem.Lett 19

      Pages: 2824-2828

    • Peer Reviewed
  • [Journal Article] Direct interaction between amphotericin B and ergosterol in lipid bilayers as revealed by 2H NMR.2009

    • Author(s)
      N. Matsumori, K. Tahara, H. Yamamoto, A. Morooka, M. Doi, T. Oishi, M. Murata.
    • Journal Title

      J.Am.Chem.Soc. 131

      Pages: 11855-11860

    • Peer Reviewed
  • [Journal Article] Ion channel complex of antibiotics as viewed by NMR.2009

    • Author(s)
      M. Murata, Y. Kasai, Y. Umegawa, N. Matsushita, H. Tsuchikawa, N. Matsumori, T. Oishi
    • Journal Title

      Pure Appl.Chem. 81

      Pages: 1123-1129

    • Peer Reviewed
  • [Journal Article] Amphotericin B-induced ion flux is markedly attenuated in phosphatidylglycerol membrane as evidenced by a newly devised fluorometric method.2009

    • Author(s)
      T. Takano, K. Konoki, N. Matsumori, M. Murata
    • Journal Title

      Bioorg.Med.Chem. 17

      Pages: 6301-6304

    • Peer Reviewed
  • [Journal Article] Self-assembly of amphotericin B is probably surrounded by ergosterol; bimolecular interactions as evidenced by solid state NMR and CD spectra.2008

    • Author(s)
      Y. Kasai, N. Matsumori, Y. Umegawa, S. Matsuoka, H. Ueno, H. Ikeuchi, T. Oishi, M. Murata
    • Journal Title

      Chem.Eur.J. 14

      Pages: 1178-1185

    • Peer Reviewed
  • [Journal Article] Structural features of dinoflagellate toxins underlying biological activity as viewed by NMR.2008

    • Author(s)
      M. Murata, N. Matsumori, K. Konoki, T. Oishi
    • Journal Title

      Bull.Chem.Soc.Jpn. 81

      Pages: 307-319

    • Peer Reviewed
  • [Journal Article] Orientation of fluorinated cholesterol in lipid bilayers analyzed by ^<19>F tensor calculation and solid-state NMR.2008

    • Author(s)
      N. Matsumori, Y. Kasai, T. Oishi, M. Murata, K. Nomura
    • Journal Title

      J.Am.Chem.Soc. 130

      Pages: 4757-4766

    • Peer Reviewed
  • [Journal Article] Effects of lipid constituents on membrane-permeablizing activating of amphidinols.2008

    • Author(s)
      N. Morsy, T. Houdai, K. Konoki, N. Matsumori, T. Oishi, M. Murata
    • Journal Title

      Bioorg.Med.Chem. 16

      Pages: 3084-3090

    • Peer Reviewed
  • [Journal Article] Roles of integral protein in membrane permeabilization by amphidinols.2008

    • Author(s)
      N. Morsy, K. Konoki, T. Houdai, N. Matsumori, T. Oishi, M. Murata, S, Aimoto
    • Journal Title

      Biochem.Biophys.Acta 1778

      Pages: 1453-1459

    • Peer Reviewed
  • [Journal Article] Complex formation of amphotericin B in sterol-containing membrane as evidenced by surface plasmon resonance.2008

    • Author(s)
      R. Mouri, K. Konoki, N. Matsumori, T. Oishi, M. Murata
    • Journal Title

      Biochemistry 47

      Pages: 7807-7815

    • Peer Reviewed
  • [Journal Article] Design and synthesis of ladder-shaped tetracyclic, heptacyclic, and decacyclic ethers and evaluation of the interaction with transmembrane proteins.2008

    • Author(s)
      K. Torikai, T. Oishi, S. Ujihara, N. Matsumori, K. Konoki, M. Murata, S. Aimoto
    • Journal Title

      J.Am Chem.Soc. 130

      Pages: 10217-10226

    • Peer Reviewed
  • [Journal Article] Convergent synthesis and biological activity of the WXYZA'B'C' ring system of maitotoxin.2008

    • Author(s)
      T. Oishi, F. Hasegawa, K. Torikai, K. Konoki, N. Matsumori, M. Murata
    • Journal Title

      Org.Lett. 10

      Pages: 3599-3602

    • Peer Reviewed
  • [Journal Article] Structure of membrane-bound amphidinol 3 in isotropic small bicelles.2008

    • Author(s)
      T. Houdai, N. Matsumori, M. Murata
    • Journal Title

      Org.Lett. 10

      Pages: 4191-4194

    • Peer Reviewed
  • [Journal Article] Accurate measurement of vicinal carbon-hydrogen coupling constants via ammonium nitrogen based on HMBC experiments.2008

    • Author(s)
      T. Yamaguchi, K. Maruyoshi, N. Matsumori, M. Murata
    • Journal Title

      Chem.Lett. 37

      Pages: 1172-1173

    • Peer Reviewed
  • [Journal Article] Interaction of ladder-shaped polyethers with transmembrane α-helix of glycophorin A as evidenced by saturation transfer difference NMR and surface plasmon resonance.2008

    • Author(s)
      S. Ujihara, T. Oishi, K. Torikai, K. Konoki, N. Matsumori, M. Murata, Y. Oshima, S. Aimoto
    • Journal Title

      Bioorg.Med.Chem.Lett. 18

      Pages: 6115-6118

    • Peer Reviewed
  • [Journal Article] Combinatorial synthesis of the 1,5-polyol system based on cross metathesis: structure revision of amphidinol 3.2008

    • Author(s)
      T. Oishi, M. Kanemoto, R. Swasono, N. Matsumori, M. Murata
    • Journal Title

      Org.Lett. 10

      Pages: 5203-5206

    • Peer Reviewed
  • [Journal Article] Ergosterol increases intermolecular distance of amphotericin B in membrane-bound assembly as evidenced by solid-state NMR.2008

    • Author(s)
      Y. Umegawa, N. Matsumori, T. Oishi, M. Murata
    • Journal Title

      Biochemistry 47

      Pages: 13463-13469

    • Peer Reviewed
  • [Presentation] ケミカルバイオロジー分子基盤としての脂質二重膜2011

    • Author(s)
      松森信明
    • Organizer
      第91回日本化学会年会特別講演(ケミカルバイオロジーの分子基盤)
    • Place of Presentation
      神奈川大学(横浜市)(招待講演)
    • Year and Date
      2011-03-27
  • [Presentation] SSNMR investigations on organic molecules in lipid bilayers : application to amphotericin B and lipid rafts, Pacifichem 20102010

    • Author(s)
      松森信明
    • Organizer
      Advance in Solid-State NMR in Biological Molecules
    • Place of Presentation
      ハワイコンベンションセンター(ホノルル)(招待講演)
    • Year and Date
      2010-12-16
  • [Presentation] 脂質ラフトにおける分子間相互作用のNMR解析2010

    • Author(s)
      松森信明
    • Organizer
      第49回NMR 討論会
    • Place of Presentation
      タワーホール船橋(東京都江戸川区)
    • Year and Date
      2010-11-17
  • [Presentation] Mechanism of membrane-action of amphidinols from marine dinoflagellate2010

    • Author(s)
      松森信明
    • Organizer
      13^<th> International Symposium on Marine Natural Products
    • Place of Presentation
      ヒルトンプーケット(タイプーケット)
    • Year and Date
      2010-10-21
  • [Presentation] 渦鞭毛藻由来アンフィジノール類の脂質膜透過化作用に関する研究2010

    • Author(s)
      松森信明
    • Organizer
      第57回トキシンシンポジウム
    • Place of Presentation
      長浜ロイヤルホテル(滋賀県長浜市)(指名講演)
    • Year and Date
      2010-07-16
  • [Presentation] 脂質二重膜における有機分子の固体NMR 解析-アンフォテリシンBと脂質ラフトを中心に2010

    • Author(s)
      松森信明
    • Organizer
      理研NMR セミナー2010
    • Place of Presentation
      理化学研究所(埼玉県和光市)(招待講演)
    • Year and Date
      2010-06-29
  • [Presentation] アンフォテリシンBチャネル複合体における分子間相互作用の固体NMR解析2009

    • Author(s)
      松森信明
    • Organizer
      第48回NMR討論会
    • Place of Presentation
      九州大学(福岡市)
    • Year and Date
      2009-11-12
  • [Presentation] Direct observation of intermolecular interaction between amphotericin B and ergosterol in lipid bilayers2009

    • Author(s)
      松森信明
    • Organizer
      3^<rd> Asia Pacific NMR Symposium
    • Place of Presentation
      ラマダプラザホテル(韓国済州島)
    • Year and Date
      2009-10-26
  • [Presentation] Direct observation of intermolecular interaction between amphotericin B and ergosterol in lipid bilayers2009

    • Author(s)
      松森信明
    • Organizer
      Naito Conference Chemical Biology II
    • Place of Presentation
      シャトレーゼガトーキングダム(北海道札幌市)
    • Year and Date
      2009-09-10
  • [Presentation] 脂質二重膜における有機分子のNMR解析2009

    • Author(s)
      松森信明
    • Organizer
      サントリー生物有機科学研究所フォーラム
    • Place of Presentation
      サントリー生物有機科学研究所(大阪府島本町)(招待講演)
    • Year and Date
      2009-08-20
  • [Presentation] 化学高分子専攻における固体NMR とその応用-脂質二重膜への応用例-2009

    • Author(s)
      松森信明
    • Organizer
      第二回先端的分析法講習会
    • Place of Presentation
      大阪大学(大阪府豊中市)(招待講演)
    • Year and Date
      2009-02-24
  • [Presentation] アンフォテリシンB-ステロール複合体の固体NMR解析2008

    • Author(s)
      松森信明
    • Organizer
      第47回NMR討論会
    • Place of Presentation
      筑波大学(茨城県つくば市)
    • Year and Date
      2008-11-14
  • [Book] ソレル有機化学 上 13章2009

    • Author(s)
      松森信明
    • Total Pages
      325-365
    • Publisher
      東京化学同人
  • [Book] Stereochemistry Research Trends, Chapter 3(作田庄平准教授と(東京大学)共同執筆)2008

    • Author(s)
      Sakuda Shohei, Matsumori Nobuaki
    • Total Pages
      89-106
    • Publisher
      Nova Publishers
  • [Remarks] ホームページ等

    • URL

      http://www.dma.jim.osaka-u.ac.jp/kg-portal/aspI/RX0011D.asp?UNO=10670&page=&Flg=1&DTLID=2401

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Published: 2012-01-26   Modified: 2016-04-21  

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