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2010 Fiscal Year Final Research Report

Detection of miRNAs using artificial oligonucleotide probes capable of chain length discrimination

Research Project

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Project/Area Number 20350074
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Chemistry related to living body
Research InstitutionTokyo Institute of Technology

Principal Investigator

SEIO Kohji  Tokyo Institute of Technology, 大学院・生命理工学研究科, 准教授 (20313356)

Project Period (FY) 2008 – 2010
KeywordsmicroRNA / 鎖長識別能 / 短鎖RNA選択的結合 / 人工核酸 / 塩基識別能 / 蛍光核酸
Research Abstract

Artificial oligonucleoptide probes were developed for the detection of mature miRNA in living cells. The new nucleic acids derivatives such as the oligonucleotide probes having short RNA selectivity, the nucleic acid analogs capable of precise base recognition and the fluorescent nucleic acids applicable for the monitoring of the hybridization events were developed. These artificial nucleic acids are useful for the miRNA detection.

  • Research Products

    (30 results)

All 2011 2010 2009 2008

All Journal Article (10 results) (of which Peer Reviewed: 10 results) Presentation (19 results) Patent(Industrial Property Rights) (1 results) (of which Overseas: 1 results)

  • [Journal Article]2011

    • Author(s)
      Tsunoda, H., Kudo, T., Masaki, Y., Ohkubo, A., Seio K., Sekine M.
    • Journal Title

      Nucleic Acids Research 39

      Pages: 2995-3004

    • Peer Reviewed
  • [Journal Article] Synthesis of oligodeoxynucleotides using the oxidatively cleavable 4-methoxytritylthio (MMTrS) group for protection of the 5-hydroxyl group.2010

    • Author(s)
      Seio, K., Shiraishi, M., Utagawa, E., Ohkubo, A., Sekine, M.
    • Journal Title

      New Journal of Chemistry 34

      Pages: 984-992

    • Peer Reviewed
  • [Journal Article] Synthesis of oligodeoxynucleotides usin fully protected deoxynucleoside 3'-phosphoramidite building blocks and base recognition of oligodeoxynucleotides incorporating N3-cyano-ethylthymine2010

    • Author(s)
      Tsunoda, H., Kudo T., Ohkubo, A., Seio, K., Sekine, M.
    • Journal Title

      Molecules 15

      Pages: 7509-7531

    • Peer Reviewed
  • [Journal Article] Linear relationship between deformability and thermal stability of 2'-O-modified RNA hetero duplexes.2010

    • Author(s)
      Masaki, Y., Miyasaka, R., Ohkubo, A., Seio, K., Sekine, M.
    • Journal Title

      Journal of Physical Chemistry B 114

      Pages: 2517-2524

    • Peer Reviewed
  • [Journal Article] Synthesis of oligodeoxynucleotides incorporating 2-N-carbamoylguanine and evaluation of the hybridization properties.2009

    • Author(s)
      Sasami, T., Odawara, Y., Ohkubo, A., Sekine, M., Seio, K.
    • Journal Title

      Bioorganic & Medicinal Chemistry 17

      Pages: 1398-1403

    • Peer Reviewed
  • [Journal Article] Computational evaluation of the stability of 2 '-O-methyl-RNA/RNA duplexes incorporating3-deazaguanine derivatives by ab initio calculations and a molecular dynamics simulation.2009

    • Author(s)
      Sasami, T., Tawarada, R., Ohkubo, A., Sekine, M., Seio, K.
    • Journal Title

      Journal of Molecular Structure-Theochem 899

      Pages: 54-60

    • Peer Reviewed
  • [Journal Article] Synthesis of terminally modified oligonucleotides and their hybridization dependence on the size of the target RNAs.2009

    • Author(s)
      Seio, K., Takaku, Y., Miyazaki, K., Kurohagi, S., Masaki, Y., Ohkubo, A., Sekine, M.
    • Journal Title

      Organic & Biomolecular Chemistry 7

      Pages: 2440-2451

    • Peer Reviewed
  • [Journal Article] Fluorescence properties of pyrimidopyrimidoindole nucleoside dC(PPI) incorporated into oligodeoxynucleotides.2009

    • Author(s)
      Mizuta, M., Seio, K., Ohkubo, A., Sekine, M.
    • Journal Title

      Journal of Physical Chemistry B 113

      Pages: 9562-9569

    • Peer Reviewed
  • [Journal Article] Synthesis and hybridization of 20-O-methyl-RNAs incorporating 2'-O-carbamoyluridine and unique participation of the carbamoyl group in U.G base pair.2009

    • Author(s)
      Seio, K., Tawarada, R., Sasami, T., Serizawa, M., Ise, M., Ohkubo, A., Sekine, M.
    • Journal Title

      Bioorganic & Medicinal Chemistry 17

      Pages: 7275-7280

    • Peer Reviewed
  • [Journal Article] Hybridization-dependent fluorescence of oligodeoxynucleotides incorporating new pyrene-modified adenosine residues.2008

    • Author(s)
      Seio, K., Mizuta, M., Tasaki, K., Tamaki, K., Ohkubo, A., Sekine, M.
    • Journal Title

      Bioorganic & Medicinal Chemistry 16

      Pages: 8287-8293

    • Peer Reviewed
  • [Presentation] 蛍光シチジン誘導体(dC^<PPI>)と2-アミノプリンを有する二重鎖核酸の蛍光特性2011

    • Author(s)
      清尾康志、大関弘貴、徳川宗史、角田浩佑、大窪章寛、関根光雄
    • Organizer
      第91日本化学会春季年会
    • Place of Presentation
      神奈川大学
    • Year and Date
      2011-03-29
  • [Presentation] 2'-O-カルバモイルウリジン誘導体を有する人工核酸の合成と性質2010

    • Author(s)
      清尾康志、徳川宗史、金森功吏、角田浩佑、大窪章寛、関根光雄
    • Organizer
      第20回アンチセンスシンポジウム
    • Place of Presentation
      甲南大学ポートアイランドキャンパス
    • Year and Date
      2010-12-02
  • [Presentation] Development of triplex forming oligonucleotide incorporating cytosine derivative capable of selective recognition of pseudouridine in DNA duplex.2010

    • Author(s)
      Kanamori T., Tsunoda, H., Ohkubo A., Sekine M., Seio, K.
    • Organizer
      第10回国際核酸化学シンポジウム
    • Place of Presentation
      浜銀ホール(横浜)
    • Year and Date
      2010-11-10
  • [Presentation] Synthesis and properties of oligonucleotides incorporating 2'-O-carbamoyl modifications.2010

    • Author(s)
      Tokugawa M., Kanamori T., Tsunoda T., Ohkubo A., Sekine M., Seio, K.
    • Organizer
      第10回国際核酸化学シンポジウム
    • Place of Presentation
      浜銀ホール(横浜)
    • Year and Date
      2010-11-10
  • [Presentation] Synthesis of oligopeptide using phosphoramidite method and transacylation.2010

    • Author(s)
      Satoh Y., Tsunoda H., Ohkubo A., Sekine M., Seio. K.
    • Organizer
      第10回国際核酸化学シンポジウム
    • Place of Presentation
      浜銀ホール(横浜)
    • Year and Date
      2010-11-10
  • [Presentation] 5'末端に修飾アデニンを導入したオリゴヌクレオチドの合成と短鎖RNA選択的結合能2010

    • Author(s)
      清尾康志、兒玉恵里佳、黒萩早耶子、角田浩佑、大窪章寛、関根光雄
    • Organizer
      第12回日本RNA学会年会
    • Place of Presentation
      一橋記念講堂
    • Year and Date
      2010-07-27
  • [Presentation] 2'-O-修飾RNAにおける変形能と二重鎖融解温度の線形関係2010

    • Author(s)
      正木慶昭、宮坂隆太、角田浩佑、大窪章寛、清尾康志、関根光雄
    • Organizer
      第90日本化学会春季年会
    • Place of Presentation
      近畿大学
    • Year and Date
      2010-03-29
  • [Presentation] 短鎖RNAの検出を指向した新規人工核酸の開発2010

    • Author(s)
      清尾康志
    • Organizer
      第90日本化学会春季年会
    • Place of Presentation
      近畿大学
    • Year and Date
      2010-03-27
  • [Presentation] 2'位に4-アミノブチルカルバモイル基を有する人工核酸の合成と性質2010

    • Author(s)
      清尾康志、徳川宗史、伊勢美沙子、角田浩佑、大窪章寛、関根光雄
    • Organizer
      第90日本化学会春季年会
    • Place of Presentation
      近畿大学
    • Year and Date
      2010-03-26
  • [Presentation] Development of new DNA triplex triads by using 5-substituted deoxycytidine.2009

    • Author(s)
      Kanamori T., Tsunoda H., Ohkubo A., Sekine M., Seio, K.
    • Organizer
      第6回国際核酸化学シンポジウム
    • Place of Presentation
      高山市民文化会館
    • Year and Date
      2009-09-28
  • [Presentation] Synthesis and properties of terminally modified oligonucleotides capable of short-RNA selective hybridization.2009

    • Author(s)
      Seio, K., Miyazaki K., Kurohagi S., Masaki Y., Tsunoda H., Ohkubo A., Sekine M.
    • Organizer
      第6回国際核酸化学シンポジウム
    • Place of Presentation
      高山市民文化会館
    • Year and Date
      2009-09-28
  • [Presentation] 末端修飾を施したオリゴヌクレオチドの合成と短鎖RNA選択的結合能2009

    • Author(s)
      清尾康志、黒萩早耶子、宮崎一也、正木慶昭、角田浩佑、大窪章寛、関根光雄
    • Organizer
      第11RNAミーティング
    • Place of Presentation
      朱鷺メッセ新潟コンベンションセンター
    • Year and Date
      2009-07-27
  • [Presentation] フルオレセインとピレンを含むオリゴヌクレオチドの合成と分光学的評価2009

    • Author(s)
      清尾康志, 田崎香, 佐藤由理, 角田浩佑, 大窪章寛, 関根光雄
    • Organizer
      日本化学会第89春季年会
    • Place of Presentation
      日本大学船橋キャンパス
    • Year and Date
      2009-03-29
  • [Presentation] 嵩高い末端修飾を施したオリゴヌクレオチドの合成と短鎖RNA選択的結合能2009

    • Author(s)
      清尾康志, 黒萩早耶子, 宮崎一也, 正木慶昭, 角田浩佑, 大窪章寛, 関根光雄
    • Organizer
      日本化学会第89春季年会
    • Place of Presentation
      日本大学 船橋キャンパス
    • Year and Date
      2009-03-29
  • [Presentation] 末端に修飾グアニン残基を有するオリゴヌクレオチドの合成と鎖長選択的RNA結合能2009

    • Author(s)
      清尾康志, 宮崎一也, 黒萩早耶子, 角田浩佑, 大窪章寛, 関根光雄
    • Organizer
      日本化学会第89春季年会
    • Place of Presentation
      日本大学船橋キャンパス
    • Year and Date
      2009-03-28
  • [Presentation] アデニンN-6位をピレンで修飾した新規DNAの合成と蛍光特性2009

    • Author(s)
      清尾康志, 佐藤由理, 田崎香・大窪章寛・関根光雄
    • Organizer
      日本化学会第89春季年会
    • Place of Presentation
      日本大学船橋キャンパス
    • Year and Date
      2009-03-28
  • [Presentation] 6-N-ピレニルカルバモイルアデニンを含む人工オリゴデオキシヌクレオチドの蛍光特性2008

    • Author(s)
      清尾康志, 田崎香, 佐藤由理, 大窪章寛, 関根光雄
    • Organizer
      第18回アンチセンスシンポジウム
    • Place of Presentation
      岐阜大学
    • Year and Date
      2008-11-17
  • [Presentation] 2-N-カルバモイルグアニンを含むオリゴヌクレオチドの合成における副反応の検討と塩基対形成能の評価2008

    • Author(s)
      佐々見武志, 小田原洋子, 大窪章寛, 関根光雄, 清尾康志
    • Organizer
      第18回アンチセンスシンポジウム
    • Place of Presentation
      岐阜大学
    • Year and Date
      2008-11-17
  • [Presentation] Synthesis of oligonucleotides terminally modified by bulky and negatively charged substituents and their hybridization with RNA targets.2008

    • Author(s)
      Seio, K., Takaku Y., Miyazaki K., Kurohagi S., Ohkubo A., Sekine M.
    • Organizer
      第35回国際核酸化学シンポジウム
    • Place of Presentation
      京都大学
    • Year and Date
      2008-09-08
  • [Patent(Industrial Property Rights)] オリゴヌクレオチド誘導体2011

    • Inventor(s)
      清尾康志, 関根光雄, 宮崎一也, 黒萩早耶子, 兒玉恵理佳
    • Industrial Property Rights Holder
      国立大学法人東京工業大学
    • Industrial Property Number
      PCT出願, PCT/JP2011/053373
    • Filing Date
      2011-02-17
    • Overseas

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Published: 2012-01-26   Modified: 2016-04-21  

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