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2010 Fiscal Year Final Research Report

Elucidation of protein dynamics as the control of protein function

Research Project

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Project/Area Number 20370062
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionNara Institute of Science and Technology

Principal Investigator

KATAOKA Mikio  Nara Institute of Science and Technology, 物質創成科学研究科, 教授 (30150254)

Co-Investigator(Kenkyū-buntansha) KAMIBKUBO Hironari  奈良先端科学技術大学院大学, 物質創成科学研究科, 准教授 (20311128)
YAMAZAKI Yoichi  奈良先端科学技術大学院大学, 物質創成科学研究科, 助教 (40332770)
Co-Investigator(Renkei-kenkyūsha) NAKAGAWA Hiroshi  日本原子力研究開発機構, 量子ビーム応用研究部門, 研究員 (20379598)
Project Period (FY) 2008 – 2010
Keywords中性子散乱 / 蛋白質動力学 / 誘導折り畳み / 水和 / 動力学転移
Research Abstract

We succeeded to create an functionally active mutant without native structure under physiological condition. Using the mutant and wild type, neutron incoherent scattering experiments were performed under various hydration levels to reveal the protein dynamics required for function. Protein dynamics relevant for function is controlled by hydration water, and the hierarchical structures of protein dynamics are dependent on the conformational states. The essential property of hydration water is revealed to be the formation of hydrogen bond network between hydration water molecules.

  • Research Products

    (17 results)

All 2011 2010 2009 2008

All Journal Article (6 results) (of which Peer Reviewed: 6 results) Presentation (6 results) Book (5 results)

  • [Journal Article] Percolation of hydration water as a control of protein dynamics2010

    • Author(s)
      Hiroshi Nakagawa, Mikio Kataoka
    • Journal Title

      Journal of Physical Society of Japan 79巻

      Pages: 083801

    • Peer Reviewed
  • [Journal Article] Non-local interaction responsible for the tertiarystructural formation of Staphylococcal nuclease.2010

    • Author(s)
      Shingo Kato, Hironari Kamikubo, Satoshi Hirano, Yoichi Yamazaki, Mikio Kataoka
    • Journal Title

      Biophysical Journal 98巻

      Pages: 678-786

    • Peer Reviewed
  • [Journal Article] Effect of conformational stateson protein dynamical transition2010

    • Author(s)
      Hiroshi, Hironari Kamikubo, Mikio Kataoka
    • Journal Title

      Biochimca et Biophysica Acta 1804巻

      Pages: 27-33

    • Peer Reviewed
  • [Journal Article] Low barrier hydrogen bond inphotoactive yellow protein2009

    • Author(s)
      Shigeo Yamaguchi, Hironari Kamikubo, Kazuo Kurihara, Ryota Kuroki, Nobuo Niimura, Nobutaka Shimizu, Yoichi Yamazaki, MikioKataoka
    • Journal Title

      Proceedings of theNational Academy of Science of USA 106巻

      Pages: 440-444

    • Peer Reviewed
  • [Journal Article] Hydration affects bothharmonic and enharmonic nature of proteindynamics2008

    • Author(s)
      Hiroshi Nakagawa, Yasumasa Joti, AkioKitao, Mikio Kataoka
    • Journal Title

      Biophysical Journal 95巻

      Pages: 2916-2923

    • Peer Reviewed
  • [Journal Article] Hydration effects onlow-frequency protein dynamics observed insimulated neutron scattering spectra2008

    • Author(s)
      asumasa Joti, Hiroshi Nakagawa, MikioKataoka, Akio Kitao
    • Journal Title

      BiophysicalJoumal 94巻

      Pages: 4435-4443

    • Peer Reviewed
  • [Presentation] Effect of hydration water on protein dynamics2010

    • Author(s)
      Mikio Kataoka
    • Organizer
      The 4th Shangai International Conference on Biophysics and Molecular Biology
    • Place of Presentation
      Shanghai-Jiashan, China
    • Year and Date
      2010-08-10
  • [Presentation] Effect of hydration on protein dynamics, Leopoldina-Symposium on the2010

    • Author(s)
      Mikio Kataoka
    • Organizer
      Complexity Connecting Biomolecular Structure and Solvation Dynamics
    • Place of Presentation
      Bochum, Germany
    • Year and Date
      2010-05-26
  • [Presentation] Mechanism of lnduced Folding of Staphylococcal Nuclease : Implication to Natively Unfolding Protein2009

    • Author(s)
      Mikio Kataoka
    • Organizer
      The 6th Asian Biophysics Association (ABA) Symposium
    • Place of Presentation
      Hong Kong, China
    • Year and Date
      2009-01-12
  • [Presentation] Effect of hydration on the glass-liketransition of protein2008

    • Author(s)
      Mikio Kataoka
    • Organizer
      JSPS Japan-France Bilateral Joint Seminar 2008"Frontiers of Glassy Physics"
    • Place of Presentation
      京都
    • Year and Date
      2008-11-19
  • [Presentation] Protein Dynamics and Structure Studied by Neutron Scattering2008

    • Author(s)
      Mikio Kataoka
    • Organizer
      Asia Science Seminar on"Frontier Science at High-lntensity Proton Accelerators"
    • Place of Presentation
      Beijing, China
    • Year and Date
      2008-10-21
  • [Presentation] Effect of hydration and conformational state on protein dynamics2008

    • Author(s)
      Mikio Kataoka
    • Organizer
      Workshop on Biomolecular Dynamics and Protein-Water Interactions
    • Place of Presentation
      Munich, German
    • Year and Date
      2008-09-25
  • [Book] in"Neutrons in Soft Matter"(eds.by T.Imae, T.Kanaya, M.Furusaka, N.Torikai)John Wiley2011

    • Author(s)
      Mikio Kataoka, Hiroshi Nakagawa
    • Total Pages
      517-538
    • Publisher
      Protein dynamics studied by neutron incoherent scattering
  • [Book] Water, The Forgotten Biological Molecule(eds.by Denis Le Bihan and Hidenao Fukuyama), Pan Stanfbrd Publishing(Singapore)2011

    • Author(s)
      Mikio Kataoka, H.iroshi Nakagawa
    • Total Pages
      49-62
    • Publisher
      Effect of hydration on protein dynamics in
  • [Book] 鍵と鍵穴か、誘導適合か-天然変性蛋白質における認識・結合分子機構の検討,in揺らぎと生体機能(MedicalBio 10月別冊,寺嶋正秀監修)2010

    • Author(s)
      片岡幹雄
    • Total Pages
      27-31
    • Publisher
      オーム社
  • [Book] Structure of the photointermediate of photoactive yellow protein and the propagataion mechanism of structural change, in"Water and Biomolecules (eds.by K.Kuwaj ima, Y.Goto, F.Hirata, M.Kataoka, M.Terazima)2009

    • Author(s)
      M.Kataoka, H.Kamikubo
    • Total Pages
      137-148
    • Publisher
      Springer-Verleg (Berlin)
  • [Book] イェロープロテインと関連蛋白質,in光科学研究の最前線2(編集委員会編),光科学研究の最前線22009

    • Author(s)
      片岡幹雄
    • Total Pages
      208
    • Publisher
      強光子場科学研究懇談会

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Published: 2012-01-26   Modified: 2016-04-21  

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