• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to project page

2010 Fiscal Year Final Research Report

The second ATP-binding site of the chaperonin GroEL and its functional role

Research Project

  • PDF
Project/Area Number 20370066
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionNational Institutes of Natural Sciences Okazaki Research Facilities

Principal Investigator

KUWAJIMA Kunihiro  National Institutes of Natural Sciences Okazaki Research Facilities, 岡崎統合バイオサイエンスセンター, 教授 (70091444)

Project Period (FY) 2008 – 2010
Keywords分子シャペロン / シャペロニン / ATP結合 / アロステリック転移
Research Abstract

The Escherichia coli chaperonin GroEL, a molecular chaperone that mediates protein folding in the biological cell, expresses its chaperone function through ATP binding. In the present study, we investigated the ATP binding to GroEL by photo-affinity labeling, amino acid sequence analysis, stopped-flow fluorescence spectroscopy, and isothermal titration calorimetry. We found (1) that the second ATP-binding site is present and located near Tyr360, and (2) that in the absence of potassium ion, only the ATP binding to the primary site was observed, and its binding constant is an order of 10^4M^<-1>.

  • Research Products

    (46 results)

All 2011 2010 2009 2008 Other

All Journal Article (10 results) (of which Peer Reviewed: 8 results) Presentation (34 results) Book (1 results) Remarks (1 results)

  • [Journal Article] Dissecting a bimolecular process of MgATP2. binding to the chaperonin GroEL.2011

    • Author(s)
      Chen, J., Makabe K., Nakamura T., Inobe, T. Kuwajima K.
    • Journal Title

      J.Mol.Biol., in the press.

    • Peer Reviewed
  • [Journal Article] 何が蛋白質のフォールディング経路を決めるのか?2010

    • Author(s)
      中村敬, 真壁幸樹, 桑島邦博
    • Journal Title

      Medical Bio 9月号別冊「揺らぎと生体機能」オーム社東京

      Pages: 52-57

  • [Journal Article] Adaptation of a hyperthermophilic group II chaperonin to relatively moderate temperatures.2010

    • Author(s)
      Kanzaki, T., Ushioku, S., Nakagawa, A., Oka, T., Takahashi, K., Nakamura T., Kuwajima K. Yamagishi, A. Yohda, M.
    • Journal Title

      Protein Eng.Des.Sel. 23

      Pages: 393-402

    • Peer Reviewed
  • [Journal Article] Different folding pathways taken by highly homologous proteins, goat α-lactalbumin and canine milk lysozyme.2010

    • Author(s)
      Nakamura T., Makabe K., Tomoyori, K., Maki, K., Mukaiyama, A. Kuwajima, K.
    • Journal Title

      J.Mol.Biol. 396

      Pages: 1361-1378

    • Peer Reviewed
  • [Journal Article] Flexible recognition of the tRNA G18 methylation target site by TrmH methyltransferase through first binding and induced fit processes.2010

    • Author(s)
      Ochi, A., Makabe K., Kuwajima K., Hori, H.
    • Journal Title

      J.Biol.Chem. 285

      Pages: 9018-9029

    • Peer Reviewed
  • [Journal Article] Non-native-helix formation is not necessary for folding of lipocalin : Comparison of burst-phase folding between tear lipocalin and β-lactoglobulin.2009

    • Author(s)
      Tsukamoto, S., Yamashita, T., Yamada, Y., Fujiwara, K., Maki, K., Kuwajima K., Matsumura, Y., Kihara, H., Tsuge, H. Ikeguchi, M.
    • Journal Title

      Proteins 76

      Pages: 226-236

    • Peer Reviewed
  • [Journal Article] Asymmetry of the GroEL-GroES complex under physiological conditions as revealed by small-angle X-ray scattering.2008

    • Author(s)
      Inobe, T., Takahashi, K., Maki, K., Enoki, S., Kamagata, K., Kadooka, A., Arai, M. Kuwajima K.
    • Journal Title

      Biophys.J. 94

      Pages: 1392-1402

    • Peer Reviewed
  • [Journal Article] Probing force- induced unfolding intermediates of a single staphylococcal nuclease molecule and the effect of ligand binding.2008

    • Author(s)
      Ishii, T., Murayama, Y., Katano, A., Maki, K., Kuwajima K. Sano, M.
    • Journal Title

      Biochem. Biophys. Res.Commun. 375

      Pages: 586-591

    • Peer Reviewed
  • [Journal Article] Sequential action of ATP-dependent subunit conformational change and interaction between helical protrusions in the closure of the built-in lid of group II chaperonins.2008

    • Author(s)
      Kanzaki, T., Iizuka, R., Takahashi, K., Maki, K., Masuda, R., Sahlan, M., Yebenes, H., Valpuesta, J.M., Oka, T., Furutani, M., Ishii, N., Kuwajima K., Yohda, M.
    • Journal Title

      J.Biol.Chem. 283

      Pages: 34773-34784

    • Peer Reviewed
  • [Journal Article] 真性体および組換え体αラクトアルブミンの構造の安定性とダイナミクス2008

    • Author(s)
      桑島邦博
    • Journal Title

      Milk Science 56

      Pages: 119-122

  • [Presentation] Solution-phase H/D exchange coupled with FT-ICR MS to probe conformational dynamics of the ATP-dependent chaperone, GroEL2011

    • Author(s)
      Q.Zhang, H.-M.Zhang, J.Chen, M.R.Emmett, C.L.Hendricksonl, K.Kuwajima A.G.Marshall
    • Organizer
      8th North America FT MS Conference
    • Place of Presentation
      Key West, Florida, USA
    • Year and Date
      20110501-20110505
  • [Presentation] Folding mechanism of β_2-microglobulin and its relationship to dialysis-related amyloidosis2011

    • Author(s)
      A.Mukaiyama, T.Nakamura, K.Makabe, K.Maki, Y.Goto, K.Kuwajima
    • Organizer
      3rd Japan-Korea Seminar on Biomolecular Sciences-Experiments and simulations
    • Place of Presentation
      Lotte Hotel, Jeju, Korea
    • Year and Date
      20110226-20110301
  • [Presentation] Molecular mechanisms of the Escherichia coli chanperonin function2011

    • Author(s)
      邦博桑島
    • Organizer
      3rd APPA Conference
    • Place of Presentation
      Shanghai University, Shanghai, China
    • Year and Date
      2011-05-07
  • [Presentation] Dissecting a bimolecular mechanism of ATP binding to the chaperonin GroEL," 4^th International Symposium of "Molecular Science of Fluctuations toward Biological Functions2010

    • Author(s)
      J.Chen, K.Makabe, K.Kuwajima
    • Organizer
      Piaza Omi, Ohtsu
    • Place of Presentation
      Piaza Omi, Ohtsu
    • Year and Date
      20101130-20111201
  • [Presentation] The molten globule state and its biological function in α-lactalbumin", 4^th International Symposium of "Molecular Science of Fluctuations toward Biological Functions"2010

    • Author(s)
      T.Nakamura, K.Makabe, T.Aizawa, K.Kawano, M.Demura K.Kuwajima
    • Organizer
      Piaza Omi, Ohtsu
    • Year and Date
      20101130-20111201
  • [Presentation] Folding study of outer surface protein A The 4^th International Symposium of Molecular science of fluctuations toward biological functions2010

    • Author(s)
      K.Makabe, T.Nakamura, K.Kuwajima
    • Organizer
      Piaza Omi, Ohtsu
    • Year and Date
      20101130-20111201
  • [Presentation] Molecular Mechanisms of Protein Folding2010

    • Author(s)
      邦博桑島
    • Organizer
      The Overseas Sokendai Lecture in Bangkok FY2010&The Inaugural CU-IMS Joint Symposium
    • Place of Presentation
      Chulalongkorn University, Bangkok, Thailand
    • Year and Date
      20101020-20101021
  • [Presentation] Identification of fatty-acid binding site in the anti-tumor complex of of α-lactalbuin by 920-MHz NMR spectroscopy2010

    • Author(s)
      邦博桑島
    • Organizer
      The 10th KIAS Conference on Protein Structure and Function, Korea Institute for Advanced Study (KIAS), Seoul, Korea
    • Place of Presentation
      Seoul, Korea
    • Year and Date
      20100930-20101002
  • [Presentation] Dissect a bimolecular mechanism of ATP binding to the chaperonin GroEL2010

    • Author(s)
      J.Chen, K.Makabe, K.Kuwajima
    • Organizer
      YSF forum, OzBio2010 conference, 12^th IUBMB conference, 21^st FAOBMB conference
    • Place of Presentation
      Melbourne, Australia
    • Year and Date
      20100923-20100926
  • [Presentation] 蛋白質フォールディング経路の速度論的理解2010

    • Author(s)
      桑島邦博
    • Organizer
      2010年日本物理学会秋季大会シンポジウム「揺らぎが決める生体分子の構造形成と機能発現」
    • Place of Presentation
      大阪府立大学・中百舌鳥キャンパス
    • Year and Date
      20100900
  • [Presentation] Folding study of outer surface protein A2010

    • Author(s)
      K.Makabe, T.Nakamura, K.Kuwajima
    • Organizer
      24^th annual symposium of the protein society
    • Place of Presentation
      San Diego, USA
    • Year and Date
      20100801-20100805
  • [Presentation] Dissect a bimolecular mechanism of ATP binding to the chaperonin GroEL2010

    • Author(s)
      J.Chen, K.Makabe, K.Kuwajima
    • Organizer
      35^th FEBS Congress
    • Place of Presentation
      Gothenburg, Sweden
    • Year and Date
      20100626-20100701
  • [Presentation] "Is the Folding Pathway Conserved in Homologous Proteins?," Bit Life Science's 3rd Annual Protein and Peptide Conference "After a Solution of the Machines of Life,"2010

    • Author(s)
      邦博桑島
    • Organizer
      Beijing International Convention Center
    • Place of Presentation
      Beijing, China
    • Year and Date
      20100321-20100323
  • [Presentation] Molecular mechanisms of protein folding," 2010 Annual Meeting of Asian CORE Program "Frontiers of Materials, Photo-, and Theoretical Molecular Sciences2010

    • Author(s)
      邦博桑島
    • Organizer
      Insitute of Atomic and Molecular Sciences, Academia Sinica
    • Place of Presentation
      Taipei, Taiwan
    • Year and Date
      20100321-20100323
  • [Presentation] "Identification of fatty-acid binding site in the anti-tumor complex of of-lactalbuin by 920-MHz NMR spectroscopy," IPR Seminar "Cooperation in Protein Science between Asian and Pacific Countries"2010

    • Author(s)
      邦博桑島
    • Organizer
      the Institute for Protein Research
    • Place of Presentation
      Osaka University
    • Year and Date
      2010-06-14
  • [Presentation] 蛋白質フォールディング問題とバイオサイエンス2010

    • Author(s)
      桑島邦博
    • Organizer
      蛋白研-統合バイオ共同セミナー
    • Place of Presentation
      大阪大学蛋白質研究所
    • Year and Date
      2010-04-22
  • [Presentation] A Potassium Switch of ATP-Induced GroEL Conformational Changes2009

    • Author(s)
      J.Chen, K.Makabe, K.Kuwajima
    • Organizer
      2nd Japan-Korea Seminar on Biomolecular Sciences .Experiments and Simulations (Asian Core Program by JSPS), Symposion Hall
    • Place of Presentation
      Nagoya University
    • Year and Date
      20091222-20091223
  • [Presentation] The molten globule state and its biological function in-lactalbumin2009

    • Author(s)
      T.Nakamura, K.Makabe, T.Aizawa, K.Kawano, M.Demura, K.Kuwajima
    • Organizer
      2nd Japan-Korea Seminar on Biomolecular Sciences-Experiments and Simulations (Asian Core Program by JSPS), Symposion Hall
    • Place of Presentation
      Nagoya University
    • Year and Date
      20091222-20091223
  • [Presentation] Role of the Main-Chain Hydrogen Bonding in-Sheet Register2009

    • Author(s)
      K.Makabe, S.Koide, K.Kuwajima
    • Organizer
      2nd Japan-Korea Seminar on Biomolecular Sciences.Experiments and Simulations (Asian Core Program by JSPS)
    • Place of Presentation
      Symposion Hall Nagoya University
    • Year and Date
      20091222-20091223
  • [Presentation] Hydrogen-exchange kinetics of the Escherichia coli chaperonin complex2009

    • Author(s)
      A.Mukaiyama, T.Takahashi, K.Makabe, K.Kuwajima
    • Organizer
      2nd Japan-Korea Seminar on Biomolecular Science-Experiments and Simulations (Asian Core Program by JSPS)
    • Place of Presentation
      Symposion Hall, Nagoya University
    • Year and Date
      20091222-20091223
  • [Presentation] A minor component of native β2-microglobulin and its relationship to dialysis-related amyloidosis2009

    • Author(s)
      邦博桑島
    • Organizer
      The 9th KIAS.SNU Conference on Protein Structure and Function
    • Place of Presentation
      Seoul National University, Seoul, Korea
    • Year and Date
      20091000
  • [Presentation] 大腸菌シャペロニンの構造ダイナミクスと機能発現2009

    • Author(s)
      桑島邦博
    • Organizer
      第58高分子討論会シンポジウム「生体に学ぶセンシング,物質輸送,分離」
    • Place of Presentation
      熊本大学工学部
    • Year and Date
      20090900
  • [Presentation] Hydrogen-exchange kinetics of the Escherichia coli chaperonin complex," Japan-Korea Symposium on Molecular Science 2009 "Chemical Dynamics in Materials and Biological Molecular Sciences2009

    • Author(s)
      邦博桑島
    • Organizer
      Asian Core Program by JSPS
    • Place of Presentation
      Awaji Yumebutai International Conference Center
    • Year and Date
      20090700
  • [Presentation] 大腸菌シャペロニンの構造ダイナミクスと機能発現2009

    • Author(s)
      桑島邦博
    • Organizer
      第9回日本蛋白質科学会年会ワークショップ「生体分子の揺らぎと機能
    • Place of Presentation
      熊本全日空ホテル
    • Year and Date
      20090500
  • [Presentation] 相同蛋白質のフォールディング機構:αラクトアルブミンとリゾチームの比較研究2009

    • Author(s)
      桑島邦博
    • Organizer
      次世代スパコンプロジェクト・ナノ分野グランドチャレンジ研究開発・ナノ統合拠点分子科学WG連続研究会「タンパク質制御(フォールディング)
    • Place of Presentation
      東京医科歯科大学
    • Year and Date
      20090300
  • [Presentation] Folding mechanism of homologous proteins : A comparative study betweenα-lactalbumin and lysozyme2009

    • Author(s)
      邦博桑島
    • Organizer
      科研費特定領域研究「水と生体分子」成果取りまとめ公開シンポジウム
    • Place of Presentation
      岡崎コンファレンスセンター
    • Year and Date
      20090300
  • [Presentation] Pathway vs.funnel perspectives of protein folding2009

    • Author(s)
      邦博桑島
    • Organizer
      Korea-Japan Seminars on Biomolecular Sciences.Experiments and Simulations (Asian Core Program by JSPS)Korea Institute for Advanced Study (KIAS)
    • Place of Presentation
      Korea
    • Year and Date
      20090227-20090302
  • [Presentation] シャペロニンの構造揺らぎとフォールディング介助機能2009

    • Author(s)
      桑島邦博
    • Organizer
      科研費新学術領域研究「揺らぎと生体機能」第1回公開シンポジウム
    • Place of Presentation
      京都テレサ
    • Year and Date
      20090100
  • [Presentation] αラクトアルブミンとリゾチームのフォールディング経路はなぜ違うのか?2008

    • Author(s)
      桑島邦博
    • Organizer
      札幌生体高分子シンポジウム
    • Place of Presentation
      北海道大学・学術交流会館
    • Year and Date
      20081200
  • [Presentation] Molecular Mechanisms of the Chaperone Function of GroEL2008

    • Author(s)
      邦博桑島
    • Organizer
      the 8th KIAS-Yonsei Conference on Protein Structure and Function
    • Place of Presentation
      Seoul (Korea)
    • Year and Date
      20081000
  • [Presentation] Folding Mechanisms of Homologous Proteins : A Comparative Study between Lysozyme and alph-Lactalbumin2008

    • Author(s)
      邦博桑島
    • Organizer
      ACS 236^th National Meeting Symposium Protein Folding Dynamics: Experiment and Theory
    • Place of Presentation
      Philadelphia (U.S.A.)
    • Year and Date
      20080800
  • [Presentation] Folding Mechanisms of Homologous Proteins : A Comparative Study between Lysozyme and α-Lactalbumin2008

    • Author(s)
      邦博桑島
    • Organizer
      2nd Pacific Rim International Conference of Protein Science
    • Place of Presentation
      Cairns (Australia)
    • Year and Date
      20080600
  • [Presentation] Folding Mechanism of Homologous Proteins : A Comparative Study ofα-Lactalbumin and Lysozyme2008

    • Author(s)
      邦博桑島
    • Organizer
      膜蛋白質研究国際フロンティア国際シンポジウム
    • Place of Presentation
      千里ライフサイエンスセンター(吹田市)
    • Year and Date
      20080300
  • [Presentation] 相同蛋白質のフォールディング機構イヌ乳リゾチームとヤギαラクトアルブミンの比較研究2008

    • Author(s)
      桑島邦博
    • Organizer
      次世代スーパーコンピュータプロジェクト「ナノ分野グランドチャレンジ研究開発」第2回公開シンポジウム
    • Place of Presentation
      岡崎コンファレンスセンター
    • Year and Date
      20080300
  • [Book] A.Experimental and Simulation Studies of the Folding/Unfolding of Goat α-Lactalbumin In : Water and Biomolecules-Physical Chemistry of Life Phenomena. (Kuwajima.K, Goto.Y, Hirata.F, Kataoka.M.& Terazima. M, Eds.)2009

    • Author(s)
      Kuwajima, K., Oroguchi, T., Nakamura, T., Ikeguchi, M. Kidera
    • Total Pages
      13-35
    • Publisher
      Springer-Verlag.
  • [Remarks] ホームページ

    • URL

      http://gagliano.ims.ac.jp/

URL: 

Published: 2012-01-26   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi