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2010 Fiscal Year Final Research Report

STRUCTUE ANALYSIS OF BIOMOLECULES BY SYNCHROTRON RADIATION VACUUM-ULTRAVIOLET CIRCULAR DICHROISM SPECTROSCOPY

Research Project

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Project/Area Number 20550153
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Chemistry related to living body
Research InstitutionHiroshima University

Principal Investigator

OHMAE Eiji  Hiroshima University, 大学院・理学研究科, 助教 (30284152)

Research Collaborator MATSUO Koichi  広島大学, 放射光科学研究センター, 特任助教 (40403620)
WOODY Robert W.  米国コロラド州立大学, 教授
Project Period (FY) 2008 – 2010
Keywords放射光 / 真空紫外円二色性 / タンパク質 / 二次構造解析 / ニューラルネットワーク法 / 糖類
Research Abstract

Synchrotron-radiation vacuum-ultraviolet circular dichroism (VUVCD) spectroscopy was applied for the detailed structural analysis of biomolecules which was difficult by a conventional CD spectroscopy as follows : (1) prediction of amino acid sequence of protein secondary structures ; comprehensive secondary-structure analysis of disulfide variants of lysozyme ; (3) experimental and theoretical analyses of VUVCD spectra of mono- and polysaccharides ; (4) secondary structure analysis of acid-glycoprotein ; and (5) structural analysis of amyloid fibrils.

  • Research Products

    (27 results)

All 2011 2010 2009 2008

All Journal Article (10 results) (of which Peer Reviewed: 8 results) Presentation (16 results) Book (1 results)

  • [Journal Article] Synchrotron radiation circular dichroism (SRCD) spectroscopy-An emerging method in structural biology for examining protein conformations and protein interactions.2011

    • Author(s)
      B.A.Wallace, K.Gekko, S.V.Hoffmann, Y.Lin, J.C.Sutherland, Y.Tao, F.Wien, R.W.Janes
    • Journal Title

      Nuclear Instruments and Methods in Physics Research A in press.

    • Peer Reviewed
  • [Journal Article] Spectroscopic characterization of inter-molecular interaction of amyloid beta promoted on GM1 micelles.2011

    • Author(s)
      M.Yagi-Utsumi, K.Matsuo, K.Yanagisawa, K.Gekko, K.Kato
    • Journal Title

      Mt.J.Alzheimer's Disease in press.

    • Peer Reviewed
  • [Journal Article] Experimental and theoretical studies of vacuum-ultraviolet electronis circular dichroism of hydroxyl acids in aqueous solution.2011

    • Author(s)
      T.Fukuyama, K.Matsuo, K.Gekko
    • Journal Title

      Chirality in press.

    • Peer Reviewed
  • [Journal Article] Differences in the molecular structure ofβ_2-microglobulin between two morphologically different amyloid fibrils.2010

    • Author(s)
      H.Hiramatsu, M.Lu, K.Matsuo, K.Gekko, Y.Goto, T.Kitagawa
    • Journal Title

      Biochemistry(Biochemistryのハイライト論文に選定) 49

      Pages: 742-751

    • Peer Reviewed
  • [Journal Article] 放射光円二色性分光法による蛋白質の溶液構造解析と医薬分野への応用2010

    • Author(s)
      松尾光一, 月向邦彦, 生天目博文, 谷口雅樹
    • Journal Title

      バイオインダストリー 27

      Pages: 63-70

  • [Journal Article] Membrane-induced conformational change of α_1-acid glycoprotein characterized by vacuum-ultraviolet circular dichroism spectroscopy.2009

    • Author(s)
      K,Matsuo, H.Namatame, M.Taniguchi, K.Gekko
    • Journal Title

      Biochemistry(広大プレスリリース,3新聞に掲載) 48

      Pages: 9103-9111

    • Peer Reviewed
  • [Journal Article] Comprehensive secondary-structure analysis of disulfide variants of lysozyme by synchrotron-radiation vacuum-ultraviolet circular dichroism.2009

    • Author(s)
      K.Matsuo, H.Watanabe, S.Tate, H.Tachibana, K.Gekk
    • Journal Title

      Proteins 77

      Pages: 191-201

    • Peer Reviewed
  • [Journal Article] Vacuum-ultraviolet circular dichroism analysis of glycosaminoglycans by synchrotron-radiation spectroscopy.2009

    • Author(s)
      K.Matsuo, H.Namatame, M.Taniguchi, K.Gekko
    • Journal Title

      Biosci.Biotechnol.Biochem.(日本農芸化学会論文賞) 73

      Pages: 557-561

    • Peer Reviewed
  • [Journal Article] 真空紫外円二色性による生体分子の高次元構造解析2009

    • Author(s)
      月向邦彦, 松尾光一
    • Journal Title

      化学と生物 47

      Pages: 86-88

  • [Journal Article] Improved sequence-based prediction of protein secondary structures by combining vacuum-ultraviolet circular dichroism spectroscopy with neural network.2008

    • Author(s)
      K.Matsuo, H.Watanabe, K.Gekko
    • Journal Title

      Proteins 73

      Pages: 104-112

    • Peer Reviewed
  • [Presentation] 蛋白質の真空紫外円二色性に及ぼすTrp側鎖のExciton効果2011

    • Author(s)
      大前英司, 松尾光一、月向邦彦
    • Organizer
      日本農芸化学会大会2011
    • Place of Presentation
      京都
    • Year and Date
      2011-03-26
  • [Presentation] Woody : β_2-Microglobulinアミロイド線維フラグメントの真空紫外円二色性スペクトルの理論解析2011

    • Author(s)
      松尾光一, 平松弘嗣, 月向邦彦, 生天目博文, 谷口雅樹, Robert W.
    • Organizer
      第24回日本放射光学会年会・放射光科学合同シンポジウム
    • Place of Presentation
      筑波
    • Year and Date
      2011-01-09
  • [Presentation] Advanced protein-structure analysis by SRCD spectroscopy.2010

    • Author(s)
      K.Gekko
    • Organizer
      International Circular Dichroism and Bioinformatics Conference (and EU/UK Annual CD Meeting).(招待講演)
    • Place of Presentation
      Warwick University, UK
    • Year and Date
      2010-12-03
  • [Presentation] 放射光円二色性分光法による生体分子構造解析の新展開2010

    • Author(s)
      月向邦彦
    • Organizer
      田中豊一記念シンポジウム2010(招待講演)
    • Place of Presentation
      京都
    • Year and Date
      2010-11-19
  • [Presentation] Structural analysis of core fragment of β_2-microglobulin amyloid fibrils by vacuum-ultraviolet CD spectroscopy.2010

    • Author(s)
      K.Matsuo, H.Hiramatsu, K.Gekko, R.W.Woody
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      仙台
    • Year and Date
      2010-09-20
  • [Presentation] Solution-structure analysis of saccharides by synchrotron-radiation vacuum-ultraviolet circular dichroism spectroscopy.2010

    • Author(s)
      K.Matsuo, K.Gekko, H.Namatame, M.Taniguchi
    • Organizer
      The 37th International Conference on Vacuum Ultraviolet and X-Ray Physics.
    • Place of Presentation
      Vancouver, Canada
    • Year and Date
      2010-07-13
  • [Presentation] 放射光真空紫外円二色性分光による水中における糖類の構造解析2010

    • Author(s)
      松尾光一, 生天目博文, 谷口雅樹, 月向邦彦
    • Organizer
      第23回日本放射光学会年会・放射光科学合同シンポジウム
    • Place of Presentation
      姫路
    • Year and Date
      2010-01-08
  • [Presentation] Theoretical analysis of vacuum-ultraviolet CD spectrum of amyloid fibril formed by β_2-microglobulin fragment.2009

    • Author(s)
      K.Matsuo, H.Hiramatsu, K.Gekko, R.W.Woody
    • Organizer
      第47回日本生物物理学会年会
    • Place of Presentation
      徳島
    • Year and Date
      2009-10-08
  • [Presentation] 放射光真空紫外円二色性分光法による糖類の構造解析2009

    • Author(s)
      月向邦彦, 松尾光一
    • Organizer
      第59回日本応用糖質化学会
    • Place of Presentation
      高山
    • Year and Date
      2009-09-09
  • [Presentation] Membrane-induced conformational change of α_1-acid glycoprotein characterized by vacuum-ultraviolet circular dichroism spectroscopy.2009

    • Author(s)
      K.Matsuo, H.Namatame, M.Taniguchi, K.Gekko
    • Organizer
      The 12th International Conference on Circular Dichroism
    • Place of Presentation
      Brescia, Italy
    • Year and Date
      2009-09-03
  • [Presentation] Recent progress of VUVCD spectroscopy at HiSOR.2009

    • Author(s)
      K.Gekko, K.Matsuo
    • Organizer
      The 2nd International Workshop on Synchrotron Radiation Circular Dichroism
    • Place of Presentation
      Beiging, China.
    • Year and Date
      2009-04-04
  • [Presentation] 時間依存密度汎関数法による糖類の真空紫外円二色性の研究2009

    • Author(s)
      松尾光一, 月向邦彦
    • Organizer
      日本化学会第89春季年会
    • Place of Presentation
      船橋
    • Year and Date
      2009-03-27
  • [Presentation] 真空紫外円二色性分光法を用いたアルコール変性タンパク質の二次構造解析2009

    • Author(s)
      松尾光一, 櫻田芳恵, 生天目博文, 谷口雅樹, 月向邦彦
    • Organizer
      第22回日本放射光学会年会・放射光科学合同シンポジウム
    • Place of Presentation
      東京
    • Year and Date
      2009-01-12
  • [Presentation] 真空紫外円二色性とニューラルネソトワーク法によるタンパク質コンフォメーション変化の二次構造部位解析2008

    • Author(s)
      松尾光一, 月向邦彦, 橘秀樹
    • Organizer
      第31回日本分子生物学会年会・第81回日本生化学会合同大会
    • Place of Presentation
      神戸
    • Year and Date
      2008-12-12
  • [Presentation] Secondary-structure analysis of proteins interacting with membrane by a vacuum-ultraviolet circular dichroism spectroscopy.2008

    • Author(s)
      K.Matsuo, H.Namatame, M.Taniguchi, K.Gekko
    • Organizer
      第46回日本生物物理学会年会
    • Place of Presentation
      福岡
    • Year and Date
      2008-12-03
  • [Presentation] Improved sequence-based prediction of protein secondary structures by combining vacuum-ultraviolet circular dichroism spectroscopy with neural network.2008

    • Author(s)
      K.Matsuo, H.Watanabe, K.Gekko
    • Organizer
      The 22th Annual Symposium of The Protein Society
    • Place of Presentation
      SanDiego, USA
    • Year and Date
      2008-07-22
  • [Book] Encyclopedia of Biophysics(Carbohydrate Circular Dichroism..)2011

    • Author(s)
      K.Gekko
    • Publisher
      Springer in press.

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Published: 2012-01-26   Modified: 2016-04-21  

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