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2010 Fiscal Year Final Research Report

Screening of thermophilic aldolases and application for the synthesis of sugar related materials

Research Project

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Project/Area Number 20560730
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Biofunction/Bioprocess
Research InstitutionKagawa University

Principal Investigator

SAKURABA Haruhiko  Kagawa University, 農学部, 教授 (90205823)

Co-Investigator(Renkei-kenkyūsha) TOSHIHISA Ohshima  九州大学, 大学院・農学研究院, 教授 (10093345)
Project Period (FY) 2008 – 2010
Keywords結晶構造解析 / 超好熱菌 / アーキア
Research Abstract

The hyperthermophilic 2-deoxy-D-ribose-5-phosphate aldolase (DERA) gene was amplified from environmental DNA by PCR. These fragments were swapped with corresponding sequence of the known hyperthermophilic DERA gene and the expression vector for the chimera enzyme was constructed. The specific activity of the recombinant chimera DERA produced in Escherichia coli was two times higher than that of the wild type enzyme. In addition, we succeeded in determination of the crystal structure of hyperthermophilic 2-keto-3-deoxygluconate aldolases.

  • Research Products

    (12 results)

All 2010 2009 2008 Other

All Journal Article (9 results) (of which Peer Reviewed: 9 results) Presentation (2 results) Remarks (1 results)

  • [Journal Article] Characteri-zation of a novel dye-linked L-proline dehydrogenase from anaerobic hyperthermophilic archaeon, Pyrobaculum calidifontis2010

    • Author(s)
      T.Satomura, X.Zhang, Y.Hara, K.Doi, H.Sakuraba, T.Ohshima
    • Journal Title

      Appl.Microbiol.Biotech. Vol.89

      Pages: 1075-1082

    • Peer Reviewed
  • [Journal Article] Crystal structure of UDP-galactose 4-epimerase-like Lthreonine dehydrogenase belonging to the intermediate short-chain dehydrogenasereductase superfamily2010

    • Author(s)
      K.Yoneda, H.Sakuraba, I.Muraoka, T.Oikawa, T.Ohshima
    • Journal Title

      FEBS J. Vol.277

      Pages: 5124-5132

    • Peer Reviewed
  • [Journal Article] Crystallization and preliminary X-ray analysis of a novel dye-linked L-proline dehydrogenase from the aerobic hyperthermophilic archaeon Aeropyrum pernix2010

    • Author(s)
      T.Satomura, H.Sakuraba, Y.Hara, T.Ohshima
    • Journal Title

      Acta.Cryst.F Vol.66

      Pages: 1508-1510

    • Peer Reviewed
  • [Journal Article] Catalytic properties and crystal structure of quinoprotein aldose sugar dehydrogenase from hyperthermophilic archaeon Pyrobaculum aerophilum2010

    • Author(s)
      H.Sakuraba, K.Yokono, K.Yoneda, A.Watanabe, Y.Asada, T.Satomura, T.Yabutani, J.Motonaka, T.Ohshima
    • Journal Title

      Arch.Biochem.Biophys. Vol.502

      Pages: 81-88

    • Peer Reviewed
  • [Journal Article] The first crystal structure of L-lysine 6-dehydrogenase as an NAD-dependent amine dehydrogenase2010

    • Author(s)
      K.Yoneda, J.Fukuda, H.Sakuraba, T.Ohshima
    • Journal Title

      J.Biol.Chem. Vol.285

      Pages: 8444-8453

    • Peer Reviewed
  • [Journal Article] Structure of a D-tagatose 3-epimerase-related protein from the hyperthermophilic bacterium Thermotoga maritima2009

    • Author(s)
      H.Sakuraba, K.Yoneda, T.Satomura, R.Kawakami, T.Ohshima
    • Journal Title

      Acta.Cryst.F Vol.65

      Pages: 199-203

    • Peer Reviewed
  • [Journal Article] Refolding, characterization and crystal structure of (S)-malatede-hydrogenase from the hyperthermophilic archaeon Aeropyrum pernix2009

    • Author(s)
      R.Kawakami, H.Sakuraba, S.Goda, H.Tsuge, T.Ohshima
    • Journal Title

      Biochim.Biophys.Acta Vol.1794

      Pages: 1496-1504

    • Peer Reviewed
  • [Journal Article] 超好熱菌アルドラーゼが触媒するアルドール縮合反応2008

    • Author(s)
      櫻庭春彦、大島敏久
    • Journal Title

      日本生物工学会誌 Vol.86

      Pages: 165-167

    • Peer Reviewed
  • [Journal Article] Structure of L-aspartate oxidase from the hyperthermophilic archaeon Sulfolobus tokodaii2008

    • Author(s)
      H.Sakuraba, K.Yoneda, I.Asai, H.Tsuge, N.Katunuma, T.Ohshima
    • Journal Title

      Biochim.Biophys.Acta Vol.1784

      Pages: 563-571

    • Peer Reviewed
  • [Presentation] 超好熱菌酵素の機能・構造解析と応用2010

    • Author(s)
      櫻庭春彦
    • Organizer
      日本農芸化学会中部支部第158回例会(シンポジウム)
    • Place of Presentation
      石川県女性センター
    • Year and Date
      2010-06-26
  • [Presentation] 環境試料由来新規アルドラーゼ遺伝子の探索2008

    • Author(s)
      佐藤杏子、櫻庭春彦、大島敏久
    • Organizer
      日本農芸化学会中四国支部2008年度支部大会
    • Place of Presentation
      鳥取大学・農学部
    • Year and Date
      2008-09-13
  • [Remarks] ホームページ等

    • URL

      http://www.ag.kagawa-u.ac.jp/sakuraba/index.html

URL: 

Published: 2012-01-26   Modified: 2016-04-21  

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