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2010 Fiscal Year Final Research Report

Molecular basis for the formation of translational repression complex that regulates stem cell differentiation

Research Project

  • PDF
Project/Area Number 20570111
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionYokohama City University

Principal Investigator

NAGATA Takashi  Yokohama City University, 生命ナノシステム科学研究科, 助教 (10415250)

Co-Investigator(Kenkyū-buntansha) KATAHIRA Masato  京都大学, エネルギー理工学研究所, 教授 (70211844)
Project Period (FY) 2008 – 2010
KeywordsMusashi / 翻訳抑制 / 幹細胞 / 分化制御 / RNA結合タンパク質 / NMR / RBD / 溶液構造
Research Abstract

Musashi1 (Msi1) is a neural protein that suppresses translation of target mRNAs and contributes in maintenance of cell stemness and tumorigenesis. We have determined the RNA recognition mechanism by Msi1. Minimal RNA sequence for Msi1, and the binding mechanism of Msi1 that we have elucidated would provide important clues to discover new target genes for Msi1. Meanwhile, we have determined the structure of PABP and identified its Msi1 binding sites. Finally, we have prepared a protocol for building protein and nucleic acid complex models that would support the structural analysis of translational repression complex.

  • Research Products

    (23 results)

All 2011 2010 2009 2008

All Journal Article (10 results) (of which Peer Reviewed: 10 results) Presentation (12 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Structures of the first and second double-stranded RNA-binding domains of human TAR RNA-binding protein2011

    • Author(s)
      Nagata, T., Yokohama, S., 他(12人中2番目、永田は1番目の著者と同じ貢献)
    • Journal Title

      Protein Sci 20

      Pages: 118-130

    • Peer Reviewed
  • [Journal Article] Solution structures of the trihelix DNA-binding domains of the wild-type and a phosphomimetic mutant of Arabidopsis GT-1: mechanism for an increase in DNA-binding affinity through phosphorylation.2010

    • Author(s)
      Nagata, T., Katahira, M., 他(9人中1番目)
    • Journal Title

      Proteins 78

      Pages: 3033-3047

    • Peer Reviewed
  • [Journal Article] Structure, interaction, and real-time monitoring of the enzymatic reaction of wild-type APOBEC3G2009

    • Author(s)
      Nagata, T., Katahira, M., 他(10人中2番目)
    • Journal Title

      EMBO J. 28

      Pages: 440-451

    • Peer Reviewed
  • [Journal Article] Unusual thermal disassembly of the SPFH domain oligomer from Pyrococcus horikoshii2009

    • Author(s)
      Nagata, T., Hiroaki, H., 他(9人中3番目)
    • Journal Title

      Bionhys.J 97

      Pages: 2034-2043

    • Peer Reviewed
  • [Journal Article] Structure and real-time monitoring of the enzymatic reaction of APOBEC3G which is involved in anti-HIV activity2009

    • Author(s)
      Nagata, T., Katahira, M., 他(10人中2番目)
    • Journal Title

      Nucleic Acids Symp Ser 53

      Pages: 87-88

    • Peer Reviewed
  • [Journal Article] The RRM domain of poly(A)-specific ribonuclease has a noncanonical binding site for mRNA cap analog recognition2008

    • Author(s)
      Nagata, T., Yokohama, S., 他(13人中1番目)
    • Journal Title

      Nucleic Acids Res 36

      Pages: 4754-4767

    • Peer Reviewed
  • [Journal Article] Elucidation of the mode of interaction in the UP1-telomerase RNA-telomeric DNA ternary complex which serves to recruit telomerase to telomeric DNA and to enhance the telomerase activity2008

    • Author(s)
      Nagata, T., Katahira, M., 他(13人中1番目)
    • Journal Title

      Nucleic Acids Res 36

      Pages: 6816-6824

    • Peer Reviewed
  • [Journal Article] N- and C-terminal Fragments of a Globular Protein Constructed by Elongation of Modules as a Units Associated for Functional Complementation2008

    • Author(s)
      Tsuji, T., Nagata, T., Yanagawa, H.
    • Journal Title

      J. Biochem 144

      Pages: 513-521

    • Peer Reviewed
  • [Journal Article] Structural analysis of Musashi-RNA complex on the basis of long-range structural information2008

    • Author(s)
      Nagata, T., Katahira, M., 他(10人中9番目)
    • Journal Title

      Nucleic Acids Symp. Ser 52

      Pages: 193-194

    • Peer Reviewed
  • [Journal Article] NMR assignments and the identification of the secondary structure of the anti-retroviral cytidine deaminase2008

    • Author(s)
      Nagata, T., Katahira, M., 他(8人中2番目)
    • Journal Title

      Nucleic Acids Symp. Ser 52

      Pages: 183-184

    • Peer Reviewed
  • [Presentation] The real-time monitoring of the enzymatic reaction of an anti-HIV factor APOBEC3G2010

    • Author(s)
      Furukawa, A.
    • Organizer
      Korea-Japan Bilateral NMR Symposium
    • Place of Presentation
      韓国、ソウル
    • Year and Date
      2010-11-25
  • [Presentation] A mechanism for an increase in DNA-binding affinity of the trihelix DNA-binding domain via its phosphorylation2010

    • Author(s)
      Nagata, T.
    • Organizer
      The 37th International Symposium on Nucleic Acids Chemistry 2010
    • Place of Presentation
      横浜
    • Year and Date
      2010-11-10
  • [Presentation] Real-time monitoring of the enzymatic reaction of APOBEC3G possessing anti-HIV activity, and the structure and interaction of the RNA aptamer against prion protein2010

    • Author(s)
      Furukawa, A.
    • Organizer
      The 10th KIAS Conference on Protein Structure and Function
    • Place of Presentation
      韓国、ソウル
    • Year and Date
      2010-09-30
  • [Presentation] The real-time monitoringof the enzymatic reaction of an anti-HIV factor APOBEC3G2010

    • Author(s)
      Furukawa, A.
    • Organizer
      XXIV International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      オーストラリア、ケアンズ
    • Year and Date
      2010-08-25
  • [Presentation] Real-time monitoring of the enzymatic reaction of APOBEC3G possessing anti-HIV activity, and the structure of the RNA aptamer against prion protein2010

    • Author(s)
      Furukawa, A.
    • Organizer
      International Symposium of Korean Society of Biochemistry and Molecular Biology -Structural Biology and Drug Discovery-
    • Place of Presentation
      韓国、チェジュ島
    • Year and Date
      2010-08-25
  • [Presentation] Real-time monitoring of the enzymatic reaction of APOBEC3G possessing anti-HIV activity, and the structure and interaction of the RNA aptamer against prion protein2010

    • Author(s)
      Katahira, M.
    • Organizer
      XXIV International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      オーストラリア、ケアンズ
    • Year and Date
      2010-08-23
  • [Presentation] Real-time monitoring of the enzymatic reaction of APOPBEC3G possessing anti-HIV activity, and the structure of the RNA aptamer against prion2009

    • Author(s)
      Katahira, M.
    • Organizer
      The 3rd Asia-Pacific NMR Symposium
    • Place of Presentation
      韓国、済州島
    • Year and Date
      2009-10-25
  • [Presentation] Structure and real-time monitoring of the enzymatic reaction of APOBEC3G which is involved in anti-HIV activity2009

    • Author(s)
      Furukawa, A.
    • Organizer
      The 3rd Asia-Pacific NMR Symposium
    • Place of Presentation
      韓国、済州島
    • Year and Date
      2009-10-25
  • [Presentation] Structural Studies of the RRM:mRNA 5' cap complex2008

    • Author(s)
      Nagata, T.
    • Organizer
      XXIII International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      米国、サンディエゴ
    • Year and Date
      2008-08-28
  • [Presentation] Structures and interactions of 4'-thioDNA and RNA/DNA-binding proteins2008

    • Author(s)
      Katahira, M.
    • Organizer
      XXIII International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      米国、サンディエゴ
    • Year and Date
      2008-08-26
  • [Presentation] Structural analyis of Musashi-RNA complex with paramagnetic effects2008

    • Author(s)
      Ohyama, T.
    • Organizer
      XXIII International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      米国、サンディエゴ
    • Year and Date
      2008-08-26
  • [Presentation] Structure determination of a multi-domain protein by the use of PRE and RDC, and the unexpected A-form structure of 4'-thioDNA exhibiting nuclease-resistance2008

    • Author(s)
      Katahira, M.
    • Organizer
      Korea-Japan Symposium on Biological NMR
    • Place of Presentation
      韓国、ソウル
    • Year and Date
      2008-04-25
  • [Patent(Industrial Property Rights)] Hsp70を有効成分として含有するHIV-1感染症治療剤2010

    • Inventor(s)
      高久洋、杉山隆一、片平正人、永田崇、古川亜矢子
    • Industrial Property Rights Holder
      千葉工業大学
    • Industrial Property Number
      国際特許,特許2009-072932、特願2010-067254、特開2010-248179
    • Filing Date
      2010-03-24

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Published: 2012-01-26   Modified: 2016-04-21  

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