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2009 Fiscal Year Annual Research Report

時間分解赤外分光法で捉えるバクテリオロドプシン内部の水分子の動態

Research Project

Project/Area Number 20657030
Research InstitutionNagoya Institute of Technology

Principal Investigator

神取 秀樹  Nagoya Institute of Technology, 工学研究科, 教授 (70202033)

Keywords生体分子 / 光スイッチ / レチナール / 生物物理 / 水素結合
Research Abstract

蛋白質の内部結合水の中には単に空間を充填するだけでなく、機能に重要な役割を演ずる水分子の存在が考えられている。我々は、光駆動プロトンポンプ蛋白質であるバクテリオロドプシンに対する精緻な低温赤外分光により、内部結合水の重要なはたらきを明らかにしてきた。本研究では、我々が低温で捉えた実験結果が、蛋白質が実際に機能する室温でも同様に起こるのかどうかを確かめるため、時間分解赤外分光を用いた解析により明らかにすることを目指している。水分子の振動バンドを室温で捉えることはきわめてチャレンジングな実験テーマであるが、ステップスキャン法を用いた時間分解赤外分光計測を最適化することによって、水分子の信号の実時間計測に挑んでいる。
初年度において水分子を捉えるための測定系を最適化することを計画していたが、幸い予想以上の進展があり、Biochemistry誌に論文発表することができた。この実験結果によれば、マイクロ秒の領域で過渡的な温度上昇による見かけのスペクトル変化を正確に補正した結果、興味深いことに、L中間体の水は室温と低温で大きく異なっていた一方、M中間体の水は室温と低温でほぼ同じ水素結合構造をしていることがわかった。平成21年度はこの計測をさらに発展させ、過去、最高精度の計測を行った結果、M1,M2という2つのM中間体の構造は、プロトン放出基である水クラスター以外には構造変化は起こらないことを見出した。
時間分解赤外分光法以外の計測の結果も含め、11編の原著論文を世に出すことができた。また、8件の招待講演を含む43件の学会発表を行った。

  • Research Products

    (54 results)

All 2009

All Journal Article (11 results) (of which Peer Reviewed: 11 results) Presentation (43 results)

  • [Journal Article] Interaction between Na+ Ion and Carboxylates of the PomA-PomB Stator Unit Studied by ATR-FTIR Spectroscopy2009

    • Author(s)
      Y.Sudo, Y.Kitade, Y.Furutani, M.Kojima, S.Kojima, M.Homma, H.Kandori
    • Journal Title

      Biochemistry 48

      Pages: 11699-11705

    • Peer Reviewed
  • [Journal Article] Characterization of a Signaling Complex Composed of Sensory Rhodopsin I and Its Cognate Transducer Protein from the Eubacterium Salinibacter ruber2009

    • Author(s)
      Y.Sudo, A.Okada, D.Suzuki, K.Inoue, H.Irieda, M.Sakai, M.Fujii, Y.Furutani, H.Kandori, M.Homma
    • Journal Title

      Biochemistry 48

      Pages: 10136-10145

    • Peer Reviewed
  • [Journal Article] Engineering an inward proton transport from a bacterial sensor rhodopsin2009

    • Author(s)
      A.Kawanabe, Y.Furutani, K.-H.Jung, H.Kandori
    • Journal Title

      J.Am.Chem.Soc. 131

      Pages: 16439-16444

    • Peer Reviewed
  • [Journal Article] Picosecond time-resolved ultrafast resonance Raman spectroscopy of bacteriorhodopsin : Primary protein response to the photoisomerization of retinal2009

    • Author(s)
      M.Mizuno, M.Shibata, J.Yamada, H.Kandori, Y.Mizutani
    • Journal Title

      J.Phys.Chem.B 113

      Pages: 12121-12128

    • Peer Reviewed
  • [Journal Article] Different Role of the Jα Helix in the Light-Induced Activation of the LOV2 Domains in Various Phototropins2009

    • Author(s)
      T.Koyama, T.Iwata, A.Yamamoto, Y.Sato, D.Matsuoka, S.Tokutomi, H.Kandori
    • Journal Title

      Biochemistry 48

      Pages: 7621-7628

    • Peer Reviewed
  • [Journal Article] Effect of Chloride Ion Binding on the Photochemical Properties of Salinibacter Sensory Rhodopsin 12009

    • Author(s)
      D.Suzuki, Y.Furutani, K.Inoue, T.Kikukawa, M.Sakai, M.Fujii, H.Kandori, M.Homma, Y.Sudo
    • Journal Title

      J.Mol.Biol. 392

      Pages: 48-62

    • Peer Reviewed
  • [Journal Article] Manipulation of Protein-Complex Function by Using an Engineered Heterotrimeric Coiled-Coil Switch2009

    • Author(s)
      T.Mizuno, K.Suzuki, T.Imai, Y.Kitade, Y.Furutani, M.Kudou, M.Oda, H.Kandori, K.Tsumoto, T.Tanaka
    • Journal Title

      Org.Biomol.Chem. 7

      Pages: 3102-3111

    • Peer Reviewed
  • [Journal Article] Property of Anion Binding Site of pharaonis Halorhodopsin Studied by Ultrafast Pump-Probe Spectroscopy and Low-Temperature FTIR Spectroscopy2009

    • Author(s)
      K.Nakashima, T.Nakamura, S.Takeuchi, M.Shibata, M.Demura, T.Tahara, H.Kandori
    • Journal Title

      J.Phys.Chem.B 113

      Pages: 8429-8434

    • Peer Reviewed
  • [Journal Article] Color-Changing Mutation in the E-F Loop of Propeorhodopsin2009

    • Author(s)
      M.Yoshitsugu, J.Yamada, H.Kandori
    • Journal Title

      Biochemistry 48

      Pages: 4324-4330

    • Peer Reviewed
  • [Journal Article] Spectroscopic and Kinetic Evidence on How Bacteriorhodopsin Accomplishes Vectorial Proton Transport under Functional Conditions2009

    • Author(s)
      V.A.Lorenz-Fonfria, H.Kandori
    • Journal Title

      J.Am.Chem.Soc. 131

      Pages: 5891-5901

    • Peer Reviewed
  • [Journal Article] Photoreactions and Structural Changes of Anabaena Sensory Rhodopsin2009

    • Author(s)
      A.Kawanabe, H.Kandori
    • Journal Title

      Sensors 9

      Pages: 9544-9607

    • Peer Reviewed
  • [Presentation] Bio-π-space in photoreceptive proteins : Spectroscopic investigation and creation of new functions2009

    • Author(s)
      神取秀樹
    • Organizer
      International Symposium on Highly Elaborated -Space and Its Function
    • Place of Presentation
      Osaka
    • Year and Date
      2009-12-18
  • [Presentation] FTIR study of metal-replaced bacterial photosynthetic reaction center2009

    • Author(s)
      A.Watanabe, 岩田達也, MY.Okamura, ML.Paddock, 神取秀樹
    • Organizer
      International Symposium on Highly Elaborated -Space and Its Function
    • Place of Presentation
      Osaka
    • Year and Date
      2009-12-18
  • [Presentation] Study on chimeric archeal-rhodopsin containing cytoplasmic loop of bovine rhodopsin2009

    • Author(s)
      A.Nakatsuma, T.Yamashita, 川鍋陽, 古谷祐詞, Y.Shichida, 神取秀樹
    • Organizer
      International Symposium on Highly Elaborated -Space and Its Function
    • Place of Presentation
      Osaka
    • Year and Date
      2009-12-18
  • [Presentation] Mechanism of color-tuning mutation in the E-F loop of proteorhodopsin2009

    • Author(s)
      山田啓介, 川鍋陽, 吉次麻衣子, 神取秀樹
    • Organizer
      International Symposium on Highly Elaborated -Space and Its Function
    • Place of Presentation
      Osaka
    • Year and Date
      2009-12-18
  • [Presentation] 低温および時間分解赤外分光法によるロドプシンの構造変化の研究2009

    • Author(s)
      神取秀樹
    • Organizer
      特定領域研究「高次系分子科学」第4回公開シンポジウム
    • Place of Presentation
      別府
    • Year and Date
      2009-11-26
  • [Presentation] フラビンを発色団とする光センサータンパク質の反応制御機構の解明2009

    • Author(s)
      岩田達也, 神取秀樹
    • Organizer
      高次π空間の創発と機能開発 第1回若手研究会
    • Place of Presentation
      仙台
    • Year and Date
      2009-11-19
  • [Presentation] Bio-π-space in photoreceptive proteins2009

    • Author(s)
      神取秀樹
    • Organizer
      The 47th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      Tokushima
    • Year and Date
      2009-10-31
  • [Presentation] FTIR study of two BLUF domains, AppA and PAC2009

    • Author(s)
      岩田達也, A.Watanabe, M.Iseki.M.Watanabe, 神取秀樹
    • Organizer
      The 47th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      Tokushima
    • Year and Date
      2009-10-31
  • [Presentation] The mutation study to create proton pumps from a bacterial sensor rhodopsin2009

    • Author(s)
      川鍋陽, K.H.Jung, 神取秀樹
    • Organizer
      The 47th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      Tokushima
    • Year and Date
      2009-10-31
  • [Presentation] FTIR Spectroscopy Directly Monitors Photoactivation and Photorepairing Processes of the (6-4) Photolyase2009

    • Author(s)
      張宇, 岩田達也, 人見研一, 山元淳平, 岩井成憲, 藤堂剛, E.D.Getzoff, 神取秀樹
    • Organizer
      The 47th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      Tokushima
    • Year and Date
      2009-10-31
  • [Presentation] Photoreaction of iLOV, an FMN-binding fluorescence protein2009

    • Author(s)
      穂積直樹, 張宇, 岩田達也, 人見研一, E.D.Getzoff, J.M.Christie, 神取秀樹
    • Organizer
      The 47th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      Tokushima
    • Year and Date
      2009-10-31
  • [Presentation] Encapsulation of ion-pumping rhodopsins into multi-wall carbon nanotubes2009

    • Author(s)
      T.Kawashima, 柳和宏, 劉崢, 古谷祐詞, 末永和知, 片浦弘道, 神取秀樹
    • Organizer
      The 47th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      Tokushima
    • Year and Date
      2009-10-31
  • [Presentation] Study on chimeric archeal-rhodopsin containing cytoplasmic loop of bovine rhodopsin2009

    • Author(s)
      A.Nakatsuma, T.Yamashita, 川鍋陽, 古谷祐詞, Y.Shichida, 神取秀樹
    • Organizer
      The 47th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      Tokushima
    • Year and Date
      2009-10-31
  • [Presentation] Spectroscopic study of proton release group of archaerhodopsins2009

    • Author(s)
      山田啓介, K.Ihara, 神取秀樹
    • Organizer
      The 47th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      Tokushima
    • Year and Date
      2009-10-31
  • [Presentation] FTIR study of metal-replaced bacterial photosynthetic reaction center2009

    • Author(s)
      A.Watanabe, 岩田達也, M.L.Paddock, M.Y.Okamura, 神取秀樹
    • Organizer
      The 47th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      Tokushima
    • Year and Date
      2009-10-31
  • [Presentation] ATR-FTIR study of KcsA channel2009

    • Author(s)
      Y.Asai, 古谷祐詞, H.Shimizu, S.Oiki, 神取秀樹
    • Organizer
      The 47th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      Tokushima
    • Year and Date
      2009-10-31
  • [Presentation] An FTIR Study of Monkey Green- and Red-Sensitive Visual Pigments2009

    • Author(s)
      片山耕大, 古谷祐詞, 今井啓雄, 神取秀樹
    • Organizer
      The 47th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      Tokushima
    • Year and Date
      2009-10-31
  • [Presentation] Color-Tuning Position in the E-F loop of Proteorhodopsin2009

    • Author(s)
      山田啓介, 川鍋陽, 吉次麻衣子, 神取秀樹
    • Organizer
      The 47th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      Tokushima
    • Year and Date
      2009-10-31
  • [Presentation] Strongly Hydrogen-Bonded Water Molecule as the Determinant of Proton-Pump Function of Rhodopsins2009

    • Author(s)
      神取秀樹
    • Organizer
      Horiba-ISSP International Symposium (ISSP-11) on "Hydrogen and Water in Condensed Matter Physics"
    • Place of Presentation
      Chiba
    • Year and Date
      2009-10-13
  • [Presentation] Identification of FTIR Bands Due to Internal Water Molecules around the Quinone Binding Sites in the Bacterial Reaction Center2009

    • Author(s)
      岩田達也, M.L.Paddock, M.Y.Okamura, 神取秀樹
    • Organizer
      Horiba-ISSP International Symposium (ISSP-11) on "Hydrogen and Water in Condensed Matter Physics"
    • Place of Presentation
      Chiba
    • Year and Date
      2009-10-13
  • [Presentation] Spectroscopic Study of Proton Release Grpup of Archaerhodopsins2009

    • Author(s)
      J.Yamada, K.Ihara, 神取秀樹
    • Organizer
      Horiba-ISSP International Symposium (ISSP-11) on "Hydrogen and Water in Condensed Matter Physics"
    • Place of Presentation
      Chiba
    • Year and Date
      2009-10-13
  • [Presentation] An FTIR Study of Monkey Green- and Red-Sensitive Visual Pigments2009

    • Author(s)
      片山耕大, 古谷祐詞, 今井啓雄, 神取秀樹
    • Organizer
      Horiba-ISSP International Symposium (ISSP-11) on "Hydrogen and Water in Condensed Matter Physics"
    • Place of Presentation
      Chiba
    • Year and Date
      2009-10-13
  • [Presentation] (6-4) 光回酵素によるDNA修復の赤外分光計測2009

    • Author(s)
      張宇, 岩田達也, 山元淳平, 人見研一, 岩井成憲, 藤堂剛, E.D.Getzoff, 神取秀樹
    • Organizer
      第3回分子科学討論会
    • Place of Presentation
      名古屋
    • Year and Date
      2009-09-24
  • [Presentation] FMN結合型蛍光タンパク質iLOVの光反応2009

    • Author(s)
      穂積直樹, 岩田達也, 張宇, 人見研一, E.D.Getzoff, J.M.Christie, 神取秀樹
    • Organizer
      第3回分子科学討論会
    • Place of Presentation
      名古屋
    • Year and Date
      2009-09-24
  • [Presentation] 古細菌型ロドプシンのカーボンナノチューブへの内包2009

    • Author(s)
      川島崇睦, 柳和宏, 劉崢, 古谷祐詞, 末永和知, 片浦弘道, 神取秀樹
    • Organizer
      第3回分子科学討論会
    • Place of Presentation
      名古屋
    • Year and Date
      2009-09-24
  • [Presentation] 霊長類色覚視物質の赤外分光解析2009

    • Author(s)
      片山耕大, 古谷祐詞, 今井啓雄, 神取秀樹
    • Organizer
      第3回分子科学討論会
    • Place of Presentation
      名古屋
    • Year and Date
      2009-09-24
  • [Presentation] Structural Analysis of Sodium Ion Binding Sites of V-ATPase from Enterococcus hirae by use of ATR-FTIR Spectroscopy2009

    • Author(s)
      古谷祐詞, T.Murata, 神取秀樹
    • Organizer
      Internal Symposium : Innovative Nanoscience of Supermolecular Motor Proteins Working in Biomembranes
    • Place of Presentation
      Kyoto
    • Year and Date
      2009-09-19
  • [Presentation] Light & Life, Light Sensor Protein2009

    • Author(s)
      神取秀樹
    • Organizer
      An International Conference on "Biotechnology for a Sustainable Future"
    • Place of Presentation
      Bali, Indonesia
    • Year and Date
      2009-09-16
  • [Presentation] 1個の水分子が光駆動プロトンポンプ機能を決める?2009

    • Author(s)
      神取秀樹
    • Organizer
      水和ナノ構造研究会
    • Place of Presentation
      北茨城
    • Year and Date
      2009-09-07
  • [Presentation] 光に応答しない膜機能分子の赤外分光測定2009

    • Author(s)
      神取秀樹, 古谷祐詞
    • Organizer
      生理学研究所研究会「作動中の膜機能分子の姿を捉える : 静止画から動画へ」
    • Place of Presentation
      岡崎
    • Year and Date
      2009-09-03
  • [Presentation] "KcsAチャネルに対する赤外分光の狙い" は達成されたのか?2009

    • Author(s)
      古谷祐詞, 神取秀樹
    • Organizer
      特定領域研究「高次系分子科学」第7回ミニ公開シンポジウム
    • Place of Presentation
      越前
    • Year and Date
      2009-08-31
  • [Presentation] 分光学的手法による生体π空間の制御機構解明と新機能の開拓2009

    • Author(s)
      神取秀樹
    • Organizer
      新学術領域研究「高次π空間」第2回公開シンポジウム
    • Place of Presentation
      京都
    • Year and Date
      2009-08-28
  • [Presentation] ロドプシンのカーボンナノチューブへの内包2009

    • Author(s)
      川島崇睦, 柳和宏, 劉崢, 古谷祐詞, 末永和知, 片浦弘道, 神取秀樹
    • Organizer
      新学術領域研究「高次π空間」第2回公開シンポジウム
    • Place of Presentation
      京都
    • Year and Date
      2009-08-28
  • [Presentation] (6-4) 光回復酵素によるDNA修復の赤外分光法を用いた解析2009

    • Author(s)
      張宇, 岩田達也, 人見研一, 山元淳平, 岩井成憲, 藤堂剛, Elizabeth D.Getzoff, 神取秀樹
    • Organizer
      第15回日本光生物学協会年会
    • Place of Presentation
      岡崎
    • Year and Date
      2009-08-19
  • [Presentation] ロドプシンのカーボンナノチューブへの内包2009

    • Author(s)
      川島崇睦, 柳和宏, 劉崢, 古谷祐詞, 末永和知, 片浦弘道, 神取秀樹
    • Organizer
      生物物理若手の会第49回夏の学校
    • Place of Presentation
      支笏湖
    • Year and Date
      2009-08-01
  • [Presentation] 霊長類色覚視物質の赤外分光解析2009

    • Author(s)
      片山耕大, 古谷祐詞, 今井啓雄, 神取秀樹
    • Organizer
      生物物理若手の会第49回夏の学校
    • Place of Presentation
      支笏湖
    • Year and Date
      2009-08-01
  • [Presentation] Proteorhodopsin の色を変えるE-Fループの変異体2009

    • Author(s)
      山田啓介, 川鍋陽, 吉次麻衣子, 神取秀樹
    • Organizer
      生物物理若手の会第49回夏の学校
    • Place of Presentation
      支笏湖
    • Year and Date
      2009-08-01
  • [Presentation] Structural changes accompanying retinal photoisomerization in rhodopsins2009

    • Author(s)
      神取秀樹
    • Organizer
      ICP2009, XXIV International Conference on Photochemistry
    • Place of Presentation
      Toledo, Spain
    • Year and Date
      2009-07-21
  • [Presentation] FTIR study of rhodopsins in action2009

    • Author(s)
      神取秀樹
    • Organizer
      15th International Congress on Photobiology : Symposium 11C "Light-Driven Proton Pumns"
    • Place of Presentation
      Dusseldorf, Germany
    • Year and Date
      2009-06-22
  • [Presentation] 全反射赤外分光法によるファラオニスフォボロドプシンの塩化物イオン結合・解離に伴う構造変化解析2009

    • Author(s)
      古谷祐詞, 北出祐也, 加茂直樹, 神取秀樹
    • Organizer
      第36回生体分子科学討論会
    • Place of Presentation
      札幌
    • Year and Date
      2009-06-19
  • [Presentation] 古細菌型ロドプシンで実現した内向きのプロトンポンプ2009

    • Author(s)
      川鍋陽, 古谷祐詞, Kwang-Hwan Jung, 神取秀樹
    • Organizer
      第36回生体分子科学討論会
    • Place of Presentation
      札幌
    • Year and Date
      2009-06-19
  • [Presentation] ATR-FTIR Spectroscopy for Investigating Interaction Changes upon Binding of Ions to Transmembrane Proteins2009

    • Author(s)
      古谷祐詞, 神取秀樹
    • Organizer
      First World Congress of International Academy of Nanomedicine (IANM)
    • Place of Presentation
      Sanya, China
    • Year and Date
      2009-06-15
  • [Presentation] Picosecond time-resolved UV resonance Raman spectroscopy of bacteriorhodopsin : Primary protein response to the photoreaction of retinalchromophore2009

    • Author(s)
      M.Mizuno, M.Shibata, J.Yamada, 神取秀樹, Y.Mizutani
    • Organizer
      14th International Conference on Time-Resolved Vibrational Spectroscopy
    • Place of Presentation
      Meredith, USA
    • Year and Date
      2009-05-10

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Published: 2011-06-16   Modified: 2016-04-21  

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