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2009 Fiscal Year Final Research Report

Systems evolutionary analysis on Hox transcription networks in the early embryonic development

Research Project

  • PDF
Project/Area Number 20700266
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Bioinformatics/Life informatics
Research InstitutionTokyo Medical and Dental University

Principal Investigator

OGISHIMA Soichi  Tokyo Medical and Dental University, 難治疾患研究所, 助教 (40447496)

Project Period (FY) 2008 – 2009
Research Abstract

We identified Hox transcriptional networks which have key roles in regulating the patterning of the antero-posterior axis at phylotypic stage in a metazoan embryo. We conducted bioinformatics methods including promoter analysis on Hox regulating genes in each evolutionary stage and anatomical structure which were retrieved from public gene expression database. We then compared Hox transcriptional networks among mouse, sea squirt, and fruit fly.

  • Research Products

    (9 results)

All 2009 2008

All Journal Article (2 results) (of which Peer Reviewed: 1 results) Presentation (5 results) Book (2 results)

  • [Journal Article] Combined in silico and in vivo analyses reveal role of Hes1 in taste cell differentiation.2009

    • Author(s)
      Ota MS, Kaneko Y, Kondo K, Ogishima S, Tanaka H, Eto K, Kondo T
    • Journal Title

      PLoS Genetics 5(4)

      Pages: e1000443

    • Peer Reviewed
  • [Journal Article] BioCichlid: central dogma-based 3D visualization system of time-course microarray data on a hierarchical biological network.2009

    • Author(s)
      Ishiwata RR, Morioka MS, Ogishima S†, Tanaka H
    • Journal Title

      Bioinformatics 25(4)

      Pages: 543-4

  • [Presentation] Systems evolutionary analysis on the putative Hox transcriptional networks.2009

    • Author(s)
      Ogishima S, Tanaka H
    • Organizer
      European Society for Evolutionary Biology 2009
    • Place of Presentation
      Politecnico di Torino, Italy
    • Year and Date
      2009-08-25
  • [Presentation] Preliminary analysis on systems evolution of the putative Hox transcriptional network.2009

    • Author(s)
      Ogishima S, Tanaka H
    • Organizer
      OWECS 2009
    • Place of Presentation
      OIST, Okinawa
    • Year and Date
      2009-08-08
  • [Presentation] Preliminary analysis on systems constraints in the putative Hox transcriptional network.2008

    • Author(s)
      Ogishima S, Tanaka H
    • Organizer
      2nd meeting of Euro EvoDevo
    • Place of Presentation
      Ghent University, Belgium
    • Year and Date
      2008-07-31
  • [Presentation] Systems biology and evolution: toward understanding of the grand design of biological systems.2008

    • Author(s)
      Ogishima S, Tanaka H
    • Organizer
      Bioinformatik-Kolloquium
    • Place of Presentation
      Goettingen University, Germany
    • Year and Date
      2008-07-14
  • [Presentation] Systems biology and evolution: toward understanding of the grand design of biological systems.2008

    • Author(s)
      Ogishima S, Tanaka H
    • Organizer
      BIOQUANT iBioS Meeting
    • Place of Presentation
      Heidelberg University, Germany
    • Year and Date
      2008-05-27
  • [Book] オープンソースで学ぶバイオインフォマティクス2008

    • Author(s)
      オープンバイオ研究会(編), 片山俊明, 荒川和晴, 二階堂愛, 荻島創一, 田中伸也, 中尾光輝
    • Publisher
      東京電機大学出版局
  • [Book] マイクロアレイデータ統計解析プロトコール2008

    • Author(s)
      藤渕航(編), 堀本勝久(編), 荻島創一, ほか
    • Publisher
      羊土社

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Published: 2011-06-18   Modified: 2016-04-21  

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