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2011 Fiscal Year Final Research Report

Reaction-diffusion modeling for intracellular environment

Research Project

  • PDF
Project/Area Number 20740243
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Biophysics/Chemical physics
Research InstitutionKobe University (2011)
Osaka University (2008-2010)

Principal Investigator

TOGASHI Yuichi  神戸大学, 大学院・システム情報学研究科, 講師 (50456919)

Project Period (FY) 2008 – 2011
Keywords生物物理学 / 分子機械 / 細胞 / 超分子混雑 / 自己組織化 / 反応拡散系 / 位相振動子系 / 時空間パターン
Research Abstract

The activities of biological cells are maintained by chemical reactions. The environment in the cell is however distinct from typical macroscopic reactors ; cells are highly crowded with macromolecules including molecular machines(e. g. enzymes), whose function is coupled with the active molecular motion, and also complex structures such as membranes and cytoskeletons. We investigated how these features of the cell may affect the reaction-diffusion behavior. We found spatiotemporal patterns in which both molecular crowding and machine motion are involved, which suggest significance of molecular "motion" in the cell.

  • Research Products

    (12 results)

All 2012 2011 2010 2009 Other

All Journal Article (1 results) (of which Peer Reviewed: 1 results) Presentation (10 results) Remarks (1 results)

  • [Journal Article] Modeling Bio-Molecular Machinery in the Complex Environment inside the Cell2011

    • Author(s)
      Yuichi Togashi
    • Journal Title

      Proceedings of 2011 IEEE/IPSJ International Symposium on Applications and the Internet

      Volume: 266

    • DOI

      DOI:10.1109/SAINT.2011.50

    • Peer Reviewed
  • [Presentation] Modeling of Molecular Networks in the Cell : Minority and Crowd2012

    • Author(s)
      Yuichi Togashi
    • Organizer
      Brock-Kobe Bilateral Workshop on Scientific Computation
    • Place of Presentation
      神戸大学(兵庫県)
    • Year and Date
      2012-05-22
  • [Presentation] 生体分子機械システムの構造形成~障壁と分子構造変化の効果2012

    • Author(s)
      冨樫祐一
    • Organizer
      日本物理学会第67回年次大会
    • Place of Presentation
      関西学院大学(兵庫県)
    • Year and Date
      2012-03-25
  • [Presentation] Modeling Bio-Molecular Machinery in the Complex Environment inside the Cell2011

    • Author(s)
      Yuichi Togashi
    • Organizer
      The 11th IEEE/IPSJ International Symposium on Applications and the Internet(SAINT2011)
    • Place of Presentation
      Holiday Inn Munich City Centre(ドイツ)
    • Year and Date
      2011-07-19
  • [Presentation] 混雑した細胞内環境における分子機械システム~反応拡散と力学的相互作用が交錯する系のモデリング2010

    • Author(s)
      冨樫祐一
    • Organizer
      定量生物学の会第3回年会
    • Place of Presentation
      東京大学(東京都)
    • Year and Date
      20101127-28
  • [Presentation] 生体分子機械の構造変化と非線形性2010

    • Author(s)
      冨樫祐一, 柳田敏雄, Alexander S. Mikhailov
    • Organizer
      日本機械学会第23回計算力学講演会(CMD2010)
    • Place of Presentation
      北見工業大学(北海道)
    • Year and Date
      2010-09-23
  • [Presentation] Formation of Reaction-Diffusion Pathways by Molecular Machines in the Crowded Intracellular Environment2010

    • Author(s)
      冨樫祐一
    • Organizer
      日本生物物理学会第48回年会
    • Place of Presentation
      東北大学(宮城県)
    • Year and Date
      2010-09-21
  • [Presentation] 混雑した反応拡散系における分子の内部状態と粒子性の効果2010

    • Author(s)
      冨樫祐一
    • Organizer
      日本物理学会第65回年次大会
    • Place of Presentation
      岡山大学(岡山県)
    • Year and Date
      2010-03-21
  • [Presentation] 混雑した細胞内環境における分子機械システムの振舞い2009

    • Author(s)
      冨樫祐一
    • Organizer
      日本生物物理学会第47回年会
    • Place of Presentation
      アスティとくしま(徳島県)
    • Year and Date
      2009-10-30
  • [Presentation] 細胞内分子機械システムの反応拡散系モデリング2009

    • Author(s)
      冨樫祐一
    • Organizer
      理研シンポジウム「細胞システムの動態と論理」
    • Place of Presentation
      理化学研究所基幹研究所(埼玉県)
    • Year and Date
      2009-04-10
  • [Presentation] 混雑した細胞内環境における分子機械システムの反応拡散過程2009

    • Author(s)
      冨樫祐一
    • Organizer
      日本物理学会第64回年次大会
    • Place of Presentation
      立教大学(東京都)
    • Year and Date
      2009-03-30
  • [Remarks]

    • URL

      http://www.togashi.tv/lab/

URL: 

Published: 2013-07-31  

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