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2010 Fiscal Year Final Research Report

Comparative evolutionary analysis on the olfactory and other chemosensory receptor gene families using whole genome sequences

Research Project

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Project/Area Number 20770192
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Evolutionary biology
Research InstitutionTokyo Medical and Dental University

Principal Investigator

NIIMURA Yoshihito  Tokyo Medical and Dental University, 難治疾患研究所, 准教授 (90396979)

Project Period (FY) 2008 – 2010
Keywords嗅覚受容体 / 化学受容 / 遺伝子ファミリー / 比較ゲノム / 分子進化 / 脊椎動物 / 霊長類 / バイオインフォマティクス
Research Abstract

Odor molecules in the environment are detected by olfactory receptors (ORs). Reflecting the diversity of odorants, vertebrate genomes harbor numerous OR genes. In this study, I have examined the relationships between degeneration of olfactory ability (decrease in the number of OR genes) and development of color vision (acquisition of trichromatic vision). As a result, contrary to the previous view, I showed that there are no direct links between them. Moreover, I investigated genome sequences from diverse organisms including amphioxus, which is a basal chordate species (relatives of vertebrates). I then revealed the origin and the early evolution of OR gene families.

  • Research Products

    (24 results)

All 2011 2010 2009 2008 Other

All Journal Article (9 results) (of which Peer Reviewed: 8 results) Presentation (14 results) Remarks (1 results)

  • [Journal Article] hzAnalyzer : detection, quantification, and visualization of contiguous homozygosity in high-density genotyping datasets.2011

    • Author(s)
      Todd A Johnson, Yoshihito Niimura, Hiroshi Tanaka, Yusuke Nakamura, Tatsuhiko Tsunoda
    • Journal Title

      Genome Biol. 12

      Pages: R21

    • Peer Reviewed
  • [Journal Article] Difference in gene duplicability may explain the difference in overall structure of protein-protein interaction networks among eukaryotes.2010

    • Author(s)
      Takeshi Hase, Yoshihito Niimura, Hiroshi Tanaka
    • Journal Title

      BMC Evol.Biol. 10

      Pages: 358

    • Peer Reviewed
  • [Journal Article] Dynamic evolution of translation initiation mechanisms in prokaryotes.2010

    • Author(s)
      So Nakagawa, Yoshihito Niimura, Kin-ichiro Miura, Takashi Gojobori
    • Journal Title

      Proc.Natl.Acad.Sci.USA 107

      Pages: 6382-6387

    • Peer Reviewed
  • [Journal Article] Degeneration of olfactory receptor gene repertories in primates: No direct link to full trichromatic vision.2010

    • Author(s)
      Atsushi Matsui, Yasuhiro Go, Yoshihito Niimura
    • Journal Title

      Mol.Biol.Evol. 27

      Pages: 1192-1200

    • Peer Reviewed
  • [Journal Article] Evolutionary dynamics of olfactory receptor genes in chordates : Interaction between environments and genomic contents.2009

    • Author(s)
      Yoshihito Niimura
    • Journal Title

      Human Genomics 4

      Pages: 107-118

    • Peer Reviewed
  • [Journal Article] On the origin and evolution of vertebrate olfactory receptor genes : Comparative genome analysis among 23 chordate species.2009

    • Author(s)
      Yoshihito Niimura
    • Journal Title

      Genome Biol.Evol. 1

      Pages: 34-44

    • Peer Reviewed
  • [Journal Article] 嗅覚受容体遺伝子ファミリーの進化ダイナミクス-ゲノムと環境の相互作用-2009

    • Author(s)
      Yoshihito Niimura
    • Journal Title

      実験医学 (12月号)27

      Pages: 3093-3102

  • [Journal Article] The evolution of animal chemosensory receptor gene repertoires : roles of chance and necessity.2008

    • Author(s)
      Masatoshi Nei, Yoshihito Niimura, Masafumi Nozawa
    • Journal Title

      Nat.Rev.Genet. 9

      Pages: 951-963

    • Peer Reviewed
  • [Journal Article] Similar numbers but different repertoires of olfactory receptor genes in humans and chimpanzees.2008

    • Author(s)
      Yasuhiro Go, Yoshihito Niimura
    • Journal Title

      Mol.Biol.Evol. 25

      Pages: 1897-1907

    • Peer Reviewed
  • [Presentation] Diversity of olfactory receptor gene repertoires among 38 mammals2011

    • Author(s)
      Yoshihito Niimura
    • Organizer
      Penn State SMBE Symposium on Molecular and Genomic Evolution
    • Place of Presentation
      State College, USA
    • Year and Date
      2011-03-19
  • [Presentation] Diversity of olfactory receptor gene repertoires among 38 mammals2011

    • Author(s)
      Yoshihito Niimura
    • Organizer
      The 20the CDB Meeting : Molecular Bases for Evolution of Complex Traits
    • Place of Presentation
      神戸
    • Year and Date
      2011-02-23
  • [Presentation] 脊椎動物嗅覚受容体遺伝子ファミリーの進化-環境に応じて変化するゲノム-2010

    • Author(s)
      新村芳人
    • Organizer
      日本遺伝学会第82回大会
    • Place of Presentation
      札幌
    • Year and Date
      2010-09-22
  • [Presentation] 脊椎動物嗅覚受容体遺伝子ファミリーの進化-環境に応じて変化するゲノム-2010

    • Author(s)
      新村芳人
    • Organizer
      第12回日本進化学会大会
    • Place of Presentation
      東京
    • Year and Date
      2010-08-04
  • [Presentation] Evolutionary dynamics of olfactory receptor genes in vertebrates : Interaction between environments and genomic contents2010

    • Author(s)
      Yoshihito Niimura
    • Organizer
      Asian Young Researchers Conference on Computational and Omics Biology
    • Place of Presentation
      台南、台湾
    • Year and Date
      2010-03-11
  • [Presentation] Evolution of olfactory receptor genes in vertebrates : From the viewpoint of comparative genomics2009

    • Author(s)
      Yoshihito Niimura
    • Organizer
      8th Surugadai International Symposium
    • Place of Presentation
      東京
    • Year and Date
      2009-09-09
  • [Presentation] 霊長類ゲノム配列を用いた嗅覚受容体遺伝子の比較解析:ヒトの嗅覚は他の霊長類よりも劣っているのだろうか?2009

    • Author(s)
      松井淳、郷康広、新村芳人
    • Organizer
      第11回日本進化学会大会
    • Place of Presentation
      札幌
    • Year and Date
      2009-09-03
  • [Presentation] On the origin and evolution of vertebrate olfactory receptor genes : Comparative genome analysis among 23 chordate species2009

    • Author(s)
      Yoshihito Niimura
    • Organizer
      12th Congress European Society for Evolutionary Biology
    • Place of Presentation
      Turin, Italy
    • Year and Date
      2009-08-25
  • [Presentation] On the origin and evolution of vertebrate olfactory receptor genes : Comparative genome analysis among 23 chordate species2009

    • Author(s)
      Yoshihito Niimura
    • Organizer
      Annual Meeting of the Society for Molecular Biology and Evolution
    • Place of Presentation
      Iowa City, USA
    • Year and Date
      2009-06-04
  • [Presentation] Evolution of vertebrate olfactory receptor gene families : From the viewpoint of comparative genomics2009

    • Author(s)
      Yoshihito Niimura
    • Organizer
      The Joint Symposium of Institutes Network and Osaka University Global COE Symposium
    • Place of Presentation
      大阪
    • Year and Date
      2009-01-31
  • [Presentation] On the origin and evolution of olfactory receptor gene families in vertebrates2008

    • Author(s)
      Yoshihito Niimura
    • Organizer
      The 6th International Symposium on Molecular and Neural Mechanisms of Taste and Olfactory Perception
    • Place of Presentation
      福岡
    • Year and Date
      2008-12-07
  • [Presentation] 脊椎動物嗅覚受容体遺伝子ファミリーの起源と進化2008

    • Author(s)
      新村芳人
    • Organizer
      日本進化学会第10回大会
    • Place of Presentation
      東京
    • Year and Date
      2008-08-22
  • [Presentation] Extensive gains and losses of olfactory receptor genes in mammalian evolution2008

    • Author(s)
      Yoshihito Niimura, Yasuhiro Go, Masatoshi Nei
    • Organizer
      XX International Congress of Genetics
    • Place of Presentation
      Berlin, Germany
    • Year and Date
      2008-07-16
  • [Presentation] Similar numbers but different repertoires of olfactory receptor genes in humans and chimpanzees2008

    • Author(s)
      Yoshihito Niimura, Yasuhiro Go
    • Organizer
      Annual Meeting of the Society for Molecular Biology and Evolution
    • Place of Presentation
      Barcelona, Spain
    • Year and Date
      2008-06-06
  • [Remarks] ホームページ

    • URL

      http://bioinfo.tmd.ac.jp/~niimura/

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Published: 2012-02-13   Modified: 2016-04-21  

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