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2009 Fiscal Year Final Research Report

Prediction of metabolic dynamics in human erythrocytes based on a large-scale mathematical model and its verification by metabolome analysis

Research Project

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Project/Area Number 20790237
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field General medical chemistry
Research InstitutionKeio University

Principal Investigator

YACHIE Ayako  Keio University, 医学部, 助教 (10453549)

Project Period (FY) 2008 – 2009
Keywordsシステム生物学 / シミュレーション / 血液保存 / メタボローム / 代謝解析
Research Abstract

Large-scale mathematical model of metabolism in human red blood cells predicted that high extracellular adenosine resulted in decrease in intracellular ATP levels, and that the reduction of cellular energy would be compensated by glycolytic activation through hypoxia-induced hemoglobin-transition. A simulation model that can reproduce the metabolic behavior in long and cold stored red blood cells in MAP solution was also developed. The MAP-stored model would contribute to high-throughput and low-cost screening of optimized stored condition.

  • Research Products

    (15 results)

All 2010 2009 2008 Other

All Journal Article (6 results) (of which Peer Reviewed: 5 results) Presentation (6 results) Book (1 results) Remarks (2 results)

  • [Journal Article] A Metabolic Model of Human Erythrocytes: Practical Application of the E-Cell Simulation Environment2010

    • Author(s)
      Yachie-Kinoshita, A., Nishino, T., Shimo, H., Suematsu, M., Tomita, M.
    • Journal Title

      J Biomed Biotechnol (in press)

    • Peer Reviewed
  • [Journal Article] Paradoxical ATP elevation in ischemic penumbra revealed by quantitative imaging mass spectrometry Antioxid2010

    • Author(s)
      Hattori, K., Kajimura, M., Hishiki, T., Nakanishi, T., Kubo, A., Nagahata, Y., Ohmura, M., Yachie-Kinoshita, A., Matsuura, T., Morikawa, T., Nakamura, T., Setou, M., Suematsu, M.
    • Journal Title

      Redox Signal (in press)

    • Peer Reviewed
  • [Journal Article] Hypotaurine is an energy-saving hepatoprotective compound against ischemia-reperfusion injury of the rat liver2010

    • Author(s)
      Sakuragawa, T., Hishiki, T., Ueno, Y., Ikeda, S., Soga, T., Yachie-Kinoshita, A., Kajimura, M., Suematsu, M.
    • Journal Title

      J. Clin. Biochem. Nutr. 46(2)

      Pages: 126-134

    • Peer Reviewed
  • [Journal Article] T-state stabilization of hemoglobin by nitric oxide to form a-nitrosyl heme causes constitutive release of ATP from human erythrocytes2010

    • Author(s)
      Akatsu, T., Tsukada, K., Hishiki, T., Suganuma, K., Tanabe, M., Shimazu, M., Kitagawa, Y., Yachie-Kinoshita, A., Suematsu, M.
    • Journal Title

      Advances in Experimental Medicine and Biology 662

      Pages: 109-114

    • Peer Reviewed
  • [Journal Article] In silico modeling and metabolome analysis of long-stored erythrocytes to improve blood storage methods2009

    • Author(s)
      Nishino, T., Yachie-Kinoshita, A. * (* corresponding authour), Hirayama, A., Soga, T., Suematsu, M., Tomita, M.
    • Journal Title

      J Biotechnol 144(3)

      Pages: 212-223

    • Peer Reviewed
  • [Journal Article] E-Cell systemによるヒト赤血球代謝シミュレーションの展開2009

    • Author(s)
      西野泰子谷内江綾子冨田勝
    • Journal Title

      人工血液 17(1)

      Pages: 37-43

  • [Presentation] Development of hepatic lobular model of metabolism based on large-scale biosimulation at individual cellular level2010

    • Author(s)
      Yahcie-Kinoshita A, Kawahara H., Suematsu M.
    • Organizer
      2nd Bio-SuperComputing Symposium 2009
    • Place of Presentation
      東京
    • Year and Date
      20100318-20100319
  • [Presentation] 赤血球代謝モデルの応用と4D細胞シミュレーションへの拡張2008

    • Author(s)
      谷内江綾子川原仁志西野泰子須 永泰弘野田茂穂大日向大地横田秀夫末松誠
    • Organizer
      Bio-SuperComputing Symposium
    • Place of Presentation
      東京
    • Year and Date
      20081225-20081226
  • [Presentation] 網羅的代謝解析により強化された肝細胞代謝モデルの開発と応用2008

    • Author(s)
      谷内江綾子藤木夏子福田亮末松誠
    • Organizer
      Bio-SuperComputing Symposium
    • Place of Presentation
      東京
    • Year and Date
      20081225-20081226
  • [Presentation] 細胞シミュレーションとメタボローム解析による実証2008

    • Author(s)
      谷内江綾子
    • Organizer
      第291回CBI学会研究講演会
    • Place of Presentation
      東京
    • Year and Date
      20080707-20080708
  • [Presentation] 1st Joint Workshop on Computational Science2008

    • Author(s)
      Yachie-Kinoshita, A., Noda, S., Yoshizawa, S., Yokota, H., Suematsu, M.
    • Organizer
      Simulation on Temporospatial Dynamics of Cellular Metabolism
    • Place of Presentation
      Tokyo
    • Year and Date
      20080707-20080708
  • [Presentation] 細胞における代謝の時空間シミュレーション2008

    • Author(s)
      谷内江綾子川原仁志野田茂穂須 永泰弘大日向大地横田秀夫末松誠
    • Organizer
      BMB2008第31回日本分子生物学会年会・第81回日本生化学会大会合同大会
    • Place of Presentation
      神戸
    • Year and Date
      2008-12-11
  • [Book] E-Cell System: Basic Concepts and Applications(Simulation of metabolism in human erythrocytes.)2010

    • Author(s)
      Kinoshita A.
    • Publisher
      Landes Bioscience(in press)
  • [Remarks] Poster Award (Tokyo 2010. 3) 2nd Bio-Supercomputing Symposium 2009

  • [Remarks] Poster Award (Tokyo 2008. 12) Bio-Supercomputing Symposium 2008

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Published: 2011-06-18   Modified: 2016-04-21  

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