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2020 Fiscal Year Annual Research Report

Comprehensive analysis of recombination auxiliary factors

Research Project

Project/Area Number 20K15713
Research InstitutionTokyo Institute of Technology

Principal Investigator

Argunhan Bilge  東京工業大学, 科学技術創成研究院, 特任助教 (30792759)

Project Period (FY) 2020-04-01 – 2021-03-31
Keywords相同組換 / DNA二重鎖切断 / DSB 修復 / Rad51 / タンパク質相互作用 / Swi5-Sfr1 / Rad52 / Rad55-Rad57
Outline of Annual Research Achievements

DNA double-strand breaks (DSBs) are the severest form of DNA damage. Homologous recombination (HR) is a mechanism that utilizes identical genetic information located elsewhere in the genome as a template for accurate DSB repair. Rad51 is the central protein in HR, but multiple auxiliary factors are involved in modulating Rad51, including Rad52, Rad54, Rad55-Rad57, and Swi5-Sfr1. These auxiliary factors all bind to Rad51, and this binding is thought to be critical for their role in Rad51 potentiation. Despite this, little is known about the nature of these interactions, especially with regards to Rad55-Rad57.
We originally tried to biochemically characterize Rad55-Rad57. Although we succeeded in purification, we were unable to characterize the interaction in-depth due to the biochemical intractability of Rad55-Rad57. We therefore employed a different approach. Structural analysis of Rad51 highlighted a solvent-exposed protruding acidic patch (PAP) comprised of three residues: E205, E206, D209. Our genetic analysis demonstrated that the E206A mutation specifically impairs the interaction with Rad55-Rad57. Moreover, mutation of all three residues to Ala (Rad51-EED) abrogated the interaction with Rad52, further impaired the interaction with Rad55-Rad57, and even impaired the interaction with Rad54. These results demonstrate that the PAP, a newly identified motif of Rad51, functions as an interaction hub for multiple auxiliary factors to facilitate the potentiation of Rad51. These results provided critical new insights into the regulation of HR by auxiliary factors.

  • Research Products

    (7 results)

All 2021 2020 Other

All Journal Article (6 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 6 results,  Open Access: 6 results) Remarks (1 results)

  • [Journal Article] A novel motif of Rad51 serves as an interaction hub for recombination auxiliary factors2021

    • Author(s)
      Afshar Negar、Argunhan Bilge、Palihati Maierdan、Taniguchi Goki、Tsubouchi Hideo、Iwasaki Hiroshi
    • Journal Title

      eLife

      Volume: 10 Pages: e64131

    • DOI

      10.7554/eLife.64131

    • Peer Reviewed / Open Access
  • [Journal Article] A conserved Ctp1/CtIP C-terminal peptide stimulates Mre11 endonuclease activity2021

    • Author(s)
      Zdravkovic Aleksandar、Daley James M.、Dutta Arijit、Niwa Tatsuya、Murayama Yasuto、Kanamaru Shuji、Ito Kentaro、Maki Takahisa、Argunhan Bilge、Takahashi Masayuki、Tsubouchi Hideo、Sung Patrick、Iwasaki Hiroshi
    • Journal Title

      Proceedings of the National Academy of Sciences USA

      Volume: 118 Pages: e2016287118

    • DOI

      10.1073/pnas.2016287118

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Two auxiliary factors promote Dmc1-driven DNA strand exchange via stepwise mechanisms2020

    • Author(s)
      Tsubouchi Hideo、Argunhan Bilge、Ito Kentaro、Takahashi Masayuki、Iwasaki Hiroshi
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 117 Pages: 12062~12070

    • DOI

      10.1073/pnas.1917419117

    • Peer Reviewed / Open Access
  • [Journal Article] Real-time tracking reveals catalytic roles for the two DNA binding sites of Rad512020

    • Author(s)
      Ito Kentaro、Murayama Yasuto、Kurokawa Yumiko、Kanamaru Shuji、Kokabu Yuichi、Maki Takahisa、Mikawa Tsutomu、Argunhan Bilge、Tsubouchi Hideo、Ikeguchi Mitsunori、Takahashi Masayuki、Iwasaki Hiroshi
    • Journal Title

      Nature Communications

      Volume: 11 Pages: 2950.

    • DOI

      10.1038/s41467-020-16750-3

    • Peer Reviewed / Open Access
  • [Journal Article] Draft Genome Sequence of Naganishia liquefaciens Strain N6, Isolated from the Japan Trench2020

    • Author(s)
      Han Yong-Woon、Kajitani Rei、Morimoto Hiroya、Palihati Maierdan、Kurokawa Yumiko、Ryusui Rie、Argunhan Bilge、Tsubouchi Hideo、Abe Fumiyoshi、Kajiwara Susumu、Iwasaki Hiroshi、Itoh Takehiko
    • Journal Title

      Microbiology Resource Announcements

      Volume: 9 Pages: e00827-20

    • DOI

      10.1128/MRA.00827-20

    • Peer Reviewed / Open Access
  • [Journal Article] Cooperative interactions facilitate stimulation of Rad51 by the Swi5-Sfr1 auxiliary factor complex2020

    • Author(s)
      Argunhan Bilge、Sakakura Masayoshi、Afshar Negar、Kurihara Misato、Ito Kentaro、Maki Takahisa、Kanamaru Shuji、Murayama Yasuto、Tsubouchi Hideo、Takahashi Masayuki、Takahashi Hideo、Iwasaki Hiroshi
    • Journal Title

      eLife

      Volume: 9 Pages: e52566

    • DOI

      10.7554/eLife.52566

    • Peer Reviewed / Open Access
  • [Remarks] 相同組換えを活性化するメカニズムを解明

    • URL

      https://www.titech.ac.jp/news/2020/047191

URL: 

Published: 2022-12-28  

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