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2011 Fiscal Year Final Research Report

Innovative research on molecular systems of immune cells using combination of single molecule imaging and numerical modeling

Research Project

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Project/Area Number 21247019
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionTokyo Institute of Technology

Principal Investigator

TOKUNAGA Makio  東京工業大学, 大学院・生命理工学研究科, 教授 (00192659)

Co-Investigator(Renkei-kenkyūsha) SOGAWA Kumiko (SAKATA Kumiko)  東京工業大学, 大学院・生命理工学研究科, 准教授 (20291073)
Project Period (FY) 2009 – 2011
Keywords1分子イメージング / 分子システム / その場計測 / 3次元イメージング / マルチカラーイメージング / HILO照明法 / 分子定量 / 数値モデル
Research Abstract

Single molecule imaging coupled with the ability to simultaneously visualize several different proteins in cells has enabled the quantification of molecular dynamics, interactions, and kinetics. Based on these three-dimensional and temporal parameters, we examine numerical modeling and computer simulations of cell functions. Using the combination of single molecule quantification and "in silico" modeling, we opened up new frontiers for understanding cells as molecular systems.

  • Research Products

    (51 results)

All 2011 2010 2009 Other

All Journal Article (9 results) (of which Peer Reviewed: 6 results) Presentation (39 results) Book (1 results) Remarks (1 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Dynein-driven transport of T cell receptor microclusters forms the cSMAC and regulates T cell activation2011

    • Author(s)
      Hashimoto-Tane A, Yokosuka T, Sakata-Sogawa K, Sakuma M, Ishihara C, Tokunaga M, Saito T
    • Journal Title

      Immunity

      Volume: Vol.34 Pages: 919-931

    • Peer Reviewed
  • [Journal Article] 免疫細胞表面の1分子イメージング計測2011

    • Author(s)
      十川久美子、徳永万喜洋
    • Journal Title

      現代化学

      Volume: 488巻 Pages: 42-43

  • [Journal Article] Spatiotemporal basis of CTLA-4-mediated negative regulation of T-cell activation2010

    • Author(s)
      Yokosuka T, Kobayashi W, Takamatsu M, Sakata-Sogawa K, Zeng H, Yagita H, Tokunaga M, Saito T
    • Journal Title

      Immunity

      Volume: Vol.33 Pages: 326-339

    • Peer Reviewed
  • [Journal Article] RNG105 Deficiency Impairs the Dendritic Localization of mRNAs for Na+/K+ ATPase Subunit Is forms and Leads to the Degeneration of Neuronal Networks2010

    • Author(s)
      Shiina N, Yamaguchi K, TokunagaM
    • Journal Title

      J. Neuroscience

      Volume: Vol.30 Pages: 12816-12830

    • Peer Reviewed
  • [Journal Article] RNA Granule Protein 140(RNG140): A Para log of RNG105 Localized to Distinct RNA Granules in Neuronal Dendrites in the Adult Vertebrate Brain2010

    • Author(s)
      Shiina N, Tokunaga M
    • Journal Title

      J. Biol. Chem.

      Volume: Vol.285 Pages: 24260-24269

    • Peer Reviewed
  • [Journal Article] Vav links the T cell antigen receptor to the actin cytoskeleton and T cell activation independently of intrinsic Guanine nucleotide exchange activity2009

    • Author(s)
      Miletic AV, Graham DB, Sakata-Sogawa K, Hiroshima M, Hamann MJ, Cemerski S, Kloeppel T, Billadeau DD, Kanagawa O, Tokunaga M, Swat W
    • Journal Title

      PLoS One

      Volume: Vol.4 Pages: e6599

    • Peer Reviewed
  • [Journal Article] Stochastic emergence of multiple intermediates detected by single-molecule quasi-static mechanical unfolding of protein2009

    • Author(s)
      Fukagawa A, Hiroshima M, Sakane I, Tokunaga M
    • Journal Title

      BIOPHYSICS

      Volume: Vol.5 Pages: 25-35

    • Peer Reviewed
  • [Journal Article] 薄層斜光照明法による細胞内での蛍光1分子観察2009

    • Author(s)
      徳永万喜洋, 十川久美子
    • Journal Title

      生物物理

      Volume: Vol.49 Pages: 318321

  • [Journal Article] 1分子イメージング:できないと言われたことにチャレンジ2009

    • Author(s)
      徳永万喜洋
    • Journal Title

      蛋白質核酸酵素

      Volume: Vol.54 Pages: 772-778

  • [Presentation] NF-kB activation mechanism regulated by IkBa2011

    • Author(s)
      Sakata-Sogawa K, Okada A, Ito Y, Tokunaga M.
    • Organizer
      17th international Bophysics Congress
    • Place of Presentation
      China National Convention Centre, Beijing, China
    • Year and Date
      20111030-1103
  • [Presentation] Quantitation of molecular dynamics and interactions in T cell activation by single-molecule microscopy with a lipid bilayersystem2011

    • Author(s)
      Ito Y, Sakata-Sogawa K, Tokunaga M
    • Organizer
      17th international Bophysics Congress
    • Place of Presentation
      China National Convention Centre, Beijing, China
    • Year and Date
      20111030-1103
  • [Presentation] Stochastic and dynamic behavior of quasi-static mechanical unzipping of single-base pair of DNA on 2D maps2011

    • Author(s)
      Fukagawa A, Hiroshima M, Tokunaga M
    • Organizer
      17th international Bophysics Congress
    • Place of Presentation
      China National Convention Centre, Beijing, China
    • Year and Date
      20111030-1103
  • [Presentation] Dynamics of spatial-temporal regulation of NF-kB inactivation2011

    • Author(s)
      Takimoto J., Tanaka T, Kaisho T, Tokunaga M, Sakata-Sogawa K
    • Organizer
      17th international Bophysics Congress
    • Place of Presentation
      China National Convention Centre, Beijing, China
    • Year and Date
      20111030-1103
  • [Presentation] Dynamics of proteins in the nucleus by single molecule analysis2011

    • Author(s)
      Tokunaga M, Sakata-Sogawa K
    • Organizer
      International Symposium on the Physicochemical Field for Genetic Activities
    • Place of Presentation
      Yumebutai, Awaji, Hyogo
    • Year and Date
      20110124-26
  • [Presentation] Dendritic mRNA transport and local translation are responsible for the formation of neuronal networks2011

    • Author(s)
      Shiina N, Tokunaga M
    • Organizer
      日本神経科学界第34回年会
    • Place of Presentation
      パシフィコ横浜,横浜,神奈川
    • Year and Date
      2011-09-16
  • [Presentation] Entropic stabilization of DNA structures by hydrogen bonds found in mechanical unzipping2011

    • Author(s)
      Fukagawa A, Hiroshima M, Tokunaga M
    • Organizer
      日本生物物理学会第49回年会
    • Place of Presentation
      兵庫県立大学,姫路,兵庫
    • Year and Date
      2011-09-16
  • [Presentation] Quantitative spatio-temporal analysis of dynamics of T cell signaling molecules on activation2011

    • Author(s)
      Ichikawa A, Sakata-Sogawa K, TokunagaM
    • Organizer
      日本生物物理学会第49回年会
    • Place of Presentation
      兵庫県立大学,姫路,兵庫
    • Year and Date
      2011-09-16
  • [Presentation] Quantitation of molecular dynamics and interactions in T cell activation by single-molecule microscopy with a lipid bilayer system2011

    • Author(s)
      Ito Y, Sakata-Sogawa K, Tokunaga M
    • Organizer
      日本生物物理学会第49回年会
    • Place of Presentation
      兵庫県立大学,姫路,兵庫
    • Year and Date
      2011-09-16
  • [Presentation] Role of a stochastic cascade reaction in the signal transduction system from the viewpoint of information processing2011

    • Author(s)
      Kajita M, Sakata-Sogawa K, Tokunaga M
    • Organizer
      日本生物物理学会第49回年会
    • Place of Presentation
      兵庫県立大学,姫路,兵庫
    • Year and Date
      2011-09-16
  • [Presentation] Single molecule imaging analysis of NF-кB inactivation by PDLIM22011

    • Author(s)
      Takimoto J, Tanaka T, Kaisho T, Tokunaga M, Sakata-Sogawa K
    • Organizer
      日本生物物理学会第49回年会
    • Place of Presentation
      兵庫県立大学,姫路,兵庫
    • Year and Date
      2011-09-16
  • [Presentation] Spatio-temporal quantitative analysis of molecular dynamics and interactions in cells using multicolor single-molecules imaging2011

    • Author(s)
      Katsuo I, Stasevich T. J, Kimura H, Sakata-Sogawa K, Tokunaga M
    • Organizer
      日本生物物理学会第49回年会
    • Place of Presentation
      兵庫県立大学,姫路,兵庫
    • Year and Date
      2011-09-16
  • [Presentation] Spatial-temporal dynamics of calcium signaling in T cell activation2011

    • Author(s)
      Shimozawa M, Ito Y, Tokunaga M, Sakata-Sogawa K
    • Organizer
      日本生物物理学会第49回年会
    • Place of Presentation
      兵庫県立大学,姫路,兵庫
    • Year and Date
      2011-09-16
  • [Presentation] Multifocal plane microscopy for three-dimensional molecular imaging and quantification in living cells2011

    • Author(s)
      Okada R, Ichinomiya K, Fujimoto Y, Abe K, Ue Y, Sakata-Sogawa K, Tokunaga M
    • Organizer
      日本生物物理学会第49回年会
    • Place of Presentation
      兵庫県立大学,姫路,兵庫
    • Year and Date
      2011-09-16
  • [Presentation] Simplified coarse-grained model of cellular membranes to simulate dynamic features of cells2011

    • Author(s)
      Kato K, Tashiro J, Miyawaki S, Ebe K, Tokunaga M
    • Organizer
      日本生物物理学会第49回年会
    • Place of Presentation
      兵庫県立大学,姫路,兵庫
    • Year and Date
      2011-09-16
  • [Presentation] Stochastic and dynamic behavior of quasi-static mechanical unzipping of single-base pair of DNA on 2D maps2010

    • Author(s)
      Fukagawa A, Hiroshima M, Tokunaga M
    • Organizer
      日本生物物理学会第48回年会
    • Place of Presentation
      東北大学,仙台,宮城
    • Year and Date
      20100920-22
  • [Presentation] single molecule imaging analysis of NFκB activation mechanism regulated by IκBα2010

    • Author(s)
      Okada A, Tokunaga M, Sakata-Sogawa K
    • Organizer
      日本生物物理学会第48回年会
    • Place of Presentation
      東北大学,仙台,宮城
    • Year and Date
      20100920-22
  • [Presentation] Single molecule imaging and quantitative analysis of activation of T cell signaling with stimulatory lipid bilayers2010

    • Author(s)
      Ito Y, Sakata-Sogawa K, Tokunaga M
    • Organizer
      日本生物物理学会第48回年会
    • Place of Presentation
      東北大学,仙台,宮城
    • Year and Date
      20100920-22
  • [Presentation] Clarification of Spatial-temporal regulation of NF-κB inactivation by single molecule fluorescence microscopy2010

    • Author(s)
      Takimoto J, Tanaka T, Kaisho T, Tokunaga M, Sakata-Sogawa K
    • Organizer
      日本生物物理学会第48回年会
    • Place of Presentation
      東北大学,仙台,宮城
    • Year and Date
      20100920-22
  • [Presentation] Single molecule analysis of dynamics of T cell signaling molecules on activation2010

    • Author(s)
      Ichikawa A, Sakata-Sogawa K, Tokunaga M
    • Organizer
      日本生物物理学会第48回年会
    • Place of Presentation
      東北大学,仙台,宮城
    • Year and Date
      20100920-22
  • [Presentation] Simplified coarse-grained model of cellular membranes to simulate dynamic features of cells2010

    • Author(s)
      Kato K, Tashiro J, Miyawaki M, Ebe K, Tokunaga M
    • Organizer
      日本生物物理学会第48回年会
    • Place of Presentation
      東北大学,仙台,宮城
    • Year and Date
      20100920-22
  • [Presentation] Signal amplification and extinction caused by propagation of fluctuation in a signal transduction pathway2010

    • Author(s)
      Kajita M, Tokunaga M
    • Organizer
      日本生物物理学会第48回年会
    • Place of Presentation
      東北大学,仙台,宮城
    • Year and Date
      20100920-22
  • [Presentation] Dynamics of transcription factor proteins in nucleus by single molecule analysis2010

    • Author(s)
      Sakata-Sogawa K, Tokunaga M
    • Organizer
      Gordon Research Conference Single Molecule Approaches To Biology
    • Place of Presentation
      il Ciocco Hotel, Lucca, Italy
    • Year and Date
      20100627-0702
  • [Presentation] Stochastic and dynamic pathways detected by quasi-static mechanical unzipping of single-base pair of DNA and MD simulations2010

    • Author(s)
      Fukagawa A, Hiroshima M, Tokunaga M
    • Organizer
      Gordon Research Conference Single Molecule Approaches To Biology
    • Place of Presentation
      il Ciocco Hotel, Lucca, Italy
    • Year and Date
      20100627-0702
  • [Presentation] NG105 and RNG140 : mRNA transport granule proteins responsible for the maintenance and development of neuronal dendrites2010

    • Author(s)
      Shiina, N, Tokunaga, M
    • Organizer
      第62回日本細胞生物学会大会
    • Place of Presentation
      大阪国際会議場
    • Year and Date
      20100519-21
  • [Presentation] Single molecule imaging in living cells and stochastic feature of molecular interactions2010

    • Author(s)
      Tokunaga M
    • Organizer
      University at Heidelberg-Tokyo Institute of Technology JOINT WORKSHOP "Life Science for Better Life"
    • Place of Presentation
      Univ. Heidelberg, Germany
    • Year and Date
      2010-07-16
  • [Presentation] Detection de molecules uniques sur cellule vivante : presentation d' une nouvelle technique de microscopie a fluorescence2010

    • Author(s)
      Sakata-Sogawa K, Tokunaga M
    • Organizer
      27eme Rencontre Scientifique Francophone de Tokyo
    • Place of Presentation
      la Maison Franco-Japonaise, Tokyo, Japan
    • Year and Date
      2010-04-03
  • [Presentation] TIRF principle and applications with a focus on biological samples2010

    • Author(s)
      Tokunaga M
    • Place of Presentation
      EMBL, Heidelberg, Germany
    • Year and Date
      2010-03-08
  • [Presentation] Single Molecule Microscopy for Immunological Cell Signaling2010

    • Author(s)
      Sakata-Sogawa K, Tokunaga M
    • Organizer
      Sweden-Japan Joint Colloquium "Current Approaches & Future Perspectives on the Human Genome, Transcriptome & Proteome"
    • Place of Presentation
      Karolinka Institute, Stockholm, Sweden
    • Year and Date
      2010-01-19
  • [Presentation] 細胞内蛍光1分子イメージングと定量解析2009

    • Author(s)
      徳永万喜洋,十川久美子
    • Organizer
      第32回日本分子生物学会年会ワークショップ
    • Place of Presentation
      パシフィコ横浜,横浜,神奈川
    • Year and Date
      2009-12-11
  • [Presentation] 薄層斜光照明法による細胞核の蛍光1分子イメージング2009

    • Author(s)
      十川久美子,徳永万喜洋
    • Organizer
      第32回日本分子生物学会年会ワークショップ
    • Place of Presentation
      パシフィコ横浜,横浜,神奈川
    • Year and Date
      2009-12-10
  • [Presentation] 生きた細胞で分子1個を鮮明に観る-1分子計測と定量-2009

    • Author(s)
      徳永万喜洋
    • Organizer
      北海道大学大学院生命科学院セミナー
    • Place of Presentation
      北大,札幌,北海道
    • Year and Date
      2009-11-12
  • [Presentation] シグナル伝達活性化におけるT細胞受容体分子会合の1分子解析2009

    • Author(s)
      徳永万喜洋,十川久美子
    • Organizer
      日本生物物理学会第47回年会
    • Place of Presentation
      アスティとくしま,徳島
    • Year and Date
      2009-10-31
  • [Presentation] 1分子計測とMDシミュレーションによるDNA1塩基対機械的伸張におけるエネルギー地形と確率的経路2009

    • Author(s)
      深川暁宏,廣島通夫,徳永万喜洋
    • Organizer
      日本生物物理学会第47回年会
    • Place of Presentation
      アスティとくしま,徳島
    • Year and Date
      2009-10-30
  • [Presentation] 薄層斜光照明法による細胞核の蛍光1分子イメージング2009

    • Author(s)
      十川久美子,徳永万喜洋
    • Organizer
      日本生化学会大会第82回シンポジウム
    • Place of Presentation
      神戸ポートアイランド,神戸,兵庫
    • Year and Date
      2009-10-21
  • [Presentation] 生きた細胞で分子1個を鮮明に観る-1分子計測と定量-2009

    • Author(s)
      徳永万喜洋
    • Organizer
      第58回高分子討論会シンポジウム
    • Place of Presentation
      熊本大,熊本
    • Year and Date
      2009-09-17
  • [Presentation] RNA granule protein RNG140 is a paralog of RNG105 and localized to distinct RNA granules in the brain of adult vertebrates2009

    • Author(s)
      Shiina N, Tokunaga M
    • Organizer
      第61回日本細胞生物学会大会
    • Place of Presentation
      名古屋,愛知
    • Year and Date
      2009-06-02
  • [Presentation] 生きた細胞で分子1個を鮮明に観る2009

    • Author(s)
      徳永万喜洋
    • Organizer
      エクストリームフォトニクスシンポジウム
    • Place of Presentation
      理研,和光,埼玉
    • Year and Date
      2009-05-20
  • [Presentation] Single Molecule Imaging in Living Cells2009

    • Author(s)
      Tokunaga M
    • Organizer
      4th Global COE International Symposium Program
    • Place of Presentation
      Titech, Meguro-ku, Tokyo
    • Year and Date
      2009-05-12
  • [Book] 第3版現代界面コロイド化学の基礎2009

    • Author(s)
      徳永万喜洋,十川久美子
    • Total Pages
      3(399-401)
    • Publisher
      丸善
  • [Remarks]

    • URL

      http://www.toku.bio.titech.ac.jp/

  • [Patent(Industrial Property Rights)] 顕微鏡システム2010

    • Inventor(s)
      宮脇成礼、徳永万喜洋、十川久美子、江部康平、堀博文
    • Industrial Property Rights Holder
      オリンパスソフトウェアテクノロジー株式会社、国立大学法人東京工業大学、独立行政法人理化学研究所
    • Industrial Property Number
      特許、特願2010-145571
    • Filing Date
      2010-06-25

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Published: 2013-07-31  

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