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2011 Fiscal Year Final Research Report

Development of the Framework to Support Large-scale Numerical Simulation on Multi-platform

Research Project

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Project/Area Number 21300017
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Computer system/Network
Research InstitutionThe Institute of Physical and Chemical Research

Principal Investigator

HIMENO Ryutaro  独立行政法人理化学研究所, 情報基盤センター, センター長 (60342838)

Co-Investigator(Kenkyū-buntansha) FUJINO Seiji  九州大学, 情報基盤研究開発センター, 教授 (40264965)
ABE Kuniyoshi  岐阜聖徳学園大学, 経済情報学部, 准教授 (10311086)
ONO Kenji  東京大学, 生産技術研究所, 特任研究員 (90334333)
ITOH Shoji  東京大学, 情報基盤センター, 特任准教授 (70333482)
OKAMOTO Yoshifumi  宇都宮大学, 大学院・工学研究科, 助教 (40415112)
Co-Investigator(Renkei-kenkyūsha) IMAMURA Toshiyuki  電気通信大学, 電気通信学部, 准教授 (60361838)
KATAGIRI Takahiro  東京大学, 情報基盤センター, 准教授 (40345434)
ITO Rika  宇宙航空研究開発機構, 研究開発本部, 主任開発員 (70442928)
NAKATA Maho  独立行政法人理化学研究所, 技術開発ユニット, 開発研究員 (50469912)
Project Period (FY) 2009 – 2011
Keywords大規模数値シミュレーション / ハイパフォーマンスコンピューティング / 計算科学 / 応用数学 / ミドルウェア / フレームワーク
Research Abstract

New linear solvers, eigenvalue solvers and modified algorithms that realize to compute fast with high accuracy and stability were proposed. These were developed to solve large-scale numerical simulations, such as electromagnetic problems, computational quantum chemistry problems and computational fluid dynamics problems. Further, in order to support large-scale numerical simulations, new technologies and libraries such as auto-tuning technologies to decide data structure depending on application problems' characteristics, job scheduling strategies to assign optimal computational resources and free library for arbitrary/higher precision linear algebra were developed.

  • Research Products

    (55 results)

All 2012 2011 2010 Other

All Journal Article (15 results) (of which Peer Reviewed: 15 results) Presentation (36 results) Book (3 results) Remarks (1 results)

  • [Journal Article] Topological Design for 3-D Optimization Using the Combination of Multistep Genetic Algorithm with Design Space Reduction and Nonconforming Mesh Connection2012

    • Author(s)
      Y. Okamoto, Y. Tominaga, and S. Sato
    • Journal Title

      IEEE Transaction on Magnetics

      Volume: 48(2) Pages: 515-518

    • Peer Reviewed
  • [Journal Article] 遺伝的アルゴリズムの多段階使用と設計空間の縮減を併用した磁気回路の形態最適化手法の提案2011

    • Author(s)
      岡本吉史,富永悠介,里周二
    • Journal Title

      電気論文誌B

      Volume: 131(8) Pages: 677-686

    • Peer Reviewed
  • [Journal Article] An alternative implementtation of the IDRstab method saving vector updates2011

    • Author(s)
      K. Aihara, K. Abe, E. Ishiwata
    • Journal Title

      JSIAM Letters

      Volume: 3 Pages: 69-72

    • Peer Reviewed
  • [Journal Article] Multi-Restarts型Look-Back GMRES(k)法の提案2011

    • Author(s)
      尾上勇介,藤野清次
    • Journal Title

      日本応用数理学会論文誌

      Volume: 21 Pages: 175-195

    • Peer Reviewed
  • [Journal Article] 分離形Multi Restarts Look-Back GMRES(k, m)法の提案2011

    • Author(s)
      尾上勇介,藤野清次
    • Journal Title

      日本シミュレーション学会論文誌

      Volume: 3 Pages: 79-881

    • Peer Reviewed
  • [Journal Article] Strange behaviors of interior-point methods for solving semidefinite programming problems in polynomial optimization2011

    • Author(s)
      H. Waki, M. Nakata, M. Muramatsu
    • Journal Title

      Computational Optimization and Applications

    • Peer Reviewed
  • [Journal Article] MPACK 0.6.7 :高精度線形代数演算ライブラリの開発2011

    • Author(s)
      中田真秀
    • Journal Title

      応用数理

      Volume: 21(2) Pages: 2-14

    • Peer Reviewed
  • [Journal Article] BiCR Variants of Hybrid BiCG Methods for Solving Linear Systems with Nonsymmetric Matrices2010

    • Author(s)
      Kuniyoshi Abe, Gerard Sleijpen
    • Journal Title

      Journal of Computational and Applied Mathematics

      Volume: 234(4) Pages: 985-994

    • Peer Reviewed
  • [Journal Article] Effectiveness of Higher Order Time Integration in Time-Domain Finite-Element Analysis2010

    • Author(s)
      Y. Okamoto, K. Fujiwara, and Y. Ishihara
    • Journal Title

      IEEE Trans. on Magnetics

      Volume: 46(8) Pages: 3321-3324

    • Peer Reviewed
  • [Journal Article] DR(s)-SORの提案2010

    • Author(s)
      藤野清次, P. Sonneveld,尾上勇介, M. van Gijzen
    • Journal Title

      日本応用数理学会論文誌

      Volume: 20(4) Pages: 289-308

    • Peer Reviewed
  • [Journal Article] クリロフ部分空間法に対する前処理方式と収束判定について2010

    • Author(s)
      伊藤祥司,杉原正顯,姫野龍太郎
    • Journal Title

      情報処理学会論文誌コンピューティングシステム(ACS)

      Volume: 3(2) Pages: 9-19

    • Peer Reviewed
  • [Journal Article] Relativistic quantum Monte Carlo method using zeroth-order regular approximation Hamiltonian2010

    • Author(s)
      Y. Nakatsuka, T. Nakajima, M. Nakata, and K. Hirao
    • Journal Title

      Journal of Chemical Physics

      Volume: 132 Pages: 054102

    • Peer Reviewed
  • [Journal Article] 半正定値計画法に対する高精度・安定計算の技術2010

    • Author(s)
      中田真秀
    • Journal Title

      オペレーションズ・リサーチ

      Volume: vol.55.no.7 Pages: 406-411

    • Peer Reviewed
  • [Journal Article] Solving linear equations with a stabilized GPBiCG method

    • Author(s)
      K. Abe, G. Sleijpen
    • Journal Title

      Applied Numerical Mathematics

      Volume: (採録決定)

    • Peer Reviewed
  • [Journal Article] BiCGStab法の前処理付きアルゴリズムに対する改善

    • Author(s)
      伊藤祥司,片桐孝洋, 他5名
    • Journal Title

      情報処理学会論文誌コンピューティングシステム(ACS)

      Volume: (採録決定)

    • Peer Reviewed
  • [Presentation] Grand Challenge in Life Science on K Computer2012

    • Author(s)
      Himeno, R.
    • Organizer
      The 1^<st> HD Physiology International Symposium : Integrative Multi-level Systems Biology for In silico Cardiology and Pharmacokinetics
    • Place of Presentation
      Tokyo, Japan
    • Year and Date
      20120120-21
  • [Presentation] 京で実現するライフサイエンスのグランドチャレンジとバイオエンジニアリング2012

    • Author(s)
      姫野龍太郎
    • Organizer
      第24回バイオエンジニアリング講演会、日本機械学会
    • Place of Presentation
      大阪
    • Year and Date
      20120107-08
  • [Presentation] 局所探索を併用した多段式進化型アルゴリズムによる磁気シールドの三次元位相最適化計算2012

    • Author(s)
      富永悠介,岡本吉史, 他2名
    • Organizer
      平成24年電気学会全国大会
    • Place of Presentation
      広島工業大学
    • Year and Date
      2012-03-21
  • [Presentation] 並列計算を援用した多段式進化型アルゴリズムによる永久磁石型同期電動機の位相最適化計算2012

    • Author(s)
      岡本吉史, 他3名
    • Organizer
      電気学会静止器・回転機合同研究会資料
    • Place of Presentation
      関西大学
    • Year and Date
      2012-01-27
  • [Presentation] BiCGStab法の前処理付きアルゴリズムに対する改善2012

    • Author(s)
      伊藤祥司,片桐孝洋, 他5名
    • Organizer
      2012年ハイパフォーマンスコンピューティングと計算科学シンポジウム論文集
    • Place of Presentation
      名古屋大学
    • Year and Date
      2012-01-26
  • [Presentation] Can hybrid BiCG methods learn from IDR?2011

    • Author(s)
      Abe, K
    • Organizer
      International Workshop on application of Iterative Methods to Engineering and its Mathematical Elements
    • Place of Presentation
      Doshisha Univ
    • Year and Date
      20111023-24
  • [Presentation] International Exascale Software Project2011

    • Author(s)
      Himeno, R.
    • Organizer
      1^<st> Experiences with K, Cologne Meeting
    • Place of Presentation
      Cologne, Germany
    • Year and Date
      20111007-08
  • [Presentation] A proposal of GPBiCGSafe method without reverse recurrence and its estimation2011

    • Author(s)
      Seiji Fujino
    • Organizer
      GAMM workshop applied and Numerical Linear Algebra with special emphasis on model reduction
    • Place of Presentation
      Bremen
    • Year and Date
      20110922-23
  • [Presentation] Development of Petascale Life Science Software Package for K Computer2011

    • Author(s)
      Himeno, R.
    • Organizer
      Plenary meeting in Bordeaux, Japanese French Laboratory for Informatics
    • Place of Presentation
      Bordeaux, France
    • Year and Date
      20110902-03
  • [Presentation] A proposal of Multi-Restarts type of Look-Back GMRES(k) methods2011

    • Author(s)
      S. Fujino
    • Organizer
      Abstract of ILAS 2011 17th Conf. of the Int. Linear Algebra Society
    • Place of Presentation
      Braunschweig, Germany
    • Year and Date
      20110822-26
  • [Presentation] Japan's Grand Challenge Activities in Life Science2011

    • Author(s)
      Himeno, R.
    • Organizer
      International Supercomputing Conference
    • Place of Presentation
      Hamburg, Germany
    • Year and Date
      20110619-23
  • [Presentation] Preconditioned linear solvers for nonsymmetric matrix which stems from earthquake response analysis of dam2011

    • Author(s)
      S. Fujino, 他3名
    • Organizer
      Proc. of ICCCM2011(Computational Contact Mechanics)
    • Place of Presentation
      Hannover, Germany
    • Year and Date
      20110615-17
  • [Presentation] Alternative implementations of the hybrid Bi-CG methods for linear equations2011

    • Author(s)
      Abe, K
    • Organizer
      10^<th> IMACS Int' l Conference on Iterative Methods in Scientific Computing
    • Place of Presentation
      Morocco
    • Year and Date
      20110518-21
  • [Presentation] GPGPUで数値計算ソフトウェアはどこまで加速するか2011

    • Author(s)
      今村俊幸
    • Organizer
      大規模計算コロキウム
    • Place of Presentation
      岐阜市
    • Year and Date
      2011-09-08
  • [Presentation] 実行時にデータ構造変換を行う疎行列ベクトル積の自動チューニング方式2011

    • Author(s)
      片桐孝洋
    • Organizer
      大規模計算コロキウム
    • Place of Presentation
      岐阜市
    • Year and Date
      2011-09-08
  • [Presentation] On the size-consistency and size-extensivity of the reduced density-matrix method2011

    • Author(s)
      Maho Nakata
    • Organizer
      ACS meeting
    • Place of Presentation
      Colorado Convention Center Room, Denver Colorado USA
    • Year and Date
      2011-08-30
  • [Presentation] 導出過程に着目した前処理付きCGS法の適切なアルゴリズム2011

    • Author(s)
      伊藤祥司,杉原正顯
    • Organizer
      2011年並列/分散/協調処理に関する「鹿児島」サマー・ワークショップ(SWoPP鹿児島2011)
    • Place of Presentation
      鹿児島
    • Year and Date
      2011-07-28
  • [Presentation] Analysis of Uniform Magnetic Field Problem by Edge Elements-Effects of Reduced Integration and High Order Elements-2011

    • Author(s)
      Y. Okamoto, 他6名
    • Organizer
      Procs. of IEEE Conf. on Electromagnetic Field Comput.(COMPUMAG 2011)
    • Place of Presentation
      Sydney Australia
    • Year and Date
      2011-07-14
  • [Presentation] Optimal Design Method Based on Magnetic Material Distributions Using Multi Step Genetic Algorithm with Reduced Design Space2011

    • Author(s)
      Yoshifumi Okamoto, Yusuke Tominaga, Shuji Sato
    • Organizer
      Procs of IEEE Conference on Electromagnetic Field Computation(COMPUMAG 2011)
    • Place of Presentation
      Sydney Australia
    • Year and Date
      2011-07-13
  • [Presentation] 前処理付きBiCGStab法の問題点に対する改良2011

    • Author(s)
      伊藤祥司,片桐孝洋, 他6名
    • Organizer
      第16回計算工学講演会
    • Place of Presentation
      東大柏
    • Year and Date
      2011-05-25
  • [Presentation] Efficient Algorithm for hardware resource management using 2-D strip packing problem2011

    • Author(s)
      R. Ito, Kenichi KIKUCHI
    • Organizer
      The forth International Symposium on Intelligent Informatics ISII2011
    • Year and Date
      2011-05-03
  • [Presentation] Solving linear equations with a stabilized GPBiCG method2011

    • Author(s)
      Abe, K
    • Organizer
      湖南商学院情報学科(招待講演)
    • Place of Presentation
      China
    • Year and Date
      2011-04-14
  • [Presentation] An improvement in preconditioned BiCGStab method2011

    • Author(s)
      S. Itoh, T. Katagiri, 他6名
    • Organizer
      2011年ハイパフォーマンスコンピューティングと計算科学シンポジウム論文集
    • Place of Presentation
      産総研(つくば)
    • Year and Date
      2011-01-18
  • [Presentation] A stabilized GPBiCG method with a strategy to remedy accuracy of Bi-CG coefficients for solving linear systems2010

    • Author(s)
      Abe, K
    • Organizer
      Conference In Numerical Analysis 2010
    • Place of Presentation
      Greece
    • Year and Date
      20100915-18
  • [Presentation] A proposal of GS-based preconditioning applicable to restarted GMRES(k) method2010

    • Author(s)
      S. Fujino, Y. Kusakabe and Y. Onoue
    • Organizer
      Proc. of NumAn2010 Conference in Numerical Analysis
    • Place of Presentation
      Chania Crete, Greece
    • Year and Date
      20100915-18
  • [Presentation] Performance evaluation of IDR(s)-based Jacobi method2010

    • Author(s)
      S. Fujino
    • Organizer
      PARA2010
    • Place of Presentation
      Reykjavk, Iceland
    • Year and Date
      20100606-09
  • [Presentation] ペタスケール環境での高並列固有値ソルバの開発2010

    • Author(s)
      今村俊幸
    • Organizer
      計算工学会講演論文集
    • Year and Date
      20100526-28
  • [Presentation] Hybrid BiCG methods vs. BiCR variants of hybrid BiCG methods2010

    • Author(s)
      Abe, K
    • Organizer
      2^<nd> Int l Kyoto-Forum on Krylov Subspace Methods
    • Place of Presentation
      Kyoto Univ., Mar
    • Year and Date
      20100325-26
  • [Presentation] Quality Control Approach for Systematic Performance Evaluations of Numerical Solving Process of Linear Equations2010

    • Author(s)
      S. Itoh, M. Sugihara
    • Organizer
      14th SIAM Conf. on Para. Proc. for Sci. Comput
    • Place of Presentation
      Seattle, WA, USA
    • Year and Date
      20100224-16
  • [Presentation] 高ユーザビリティを目指す大規模並列シミュレータの開発インフラSPHERE2010

    • Author(s)
      小野謙二
    • Organizer
      第2回自動チューニング技術の現状と応用に関するシンポジウム
    • Place of Presentation
      東京大学
    • Year and Date
      2010-11-04
  • [Presentation] アプリケーションミドルウェアSPHEREの開発2010

    • Author(s)
      伊東聰,小野謙二
    • Organizer
      第3回大規模計算ワークショップ
    • Place of Presentation
      理研
    • Year and Date
      2010-10-27
  • [Presentation] サブパラメトリック辺要素による一様磁界計算2010

    • Author(s)
      岡本吉史, 他4名
    • Organizer
      電気学会静止器・回転機合同研究会資料
    • Place of Presentation
      かごしま県民交流センター
    • Year and Date
      2010-09-28
  • [Presentation] Fast Magnetic Field Analysis by Applying Nonconforming Mesh Connection Technique to an outer Region2010

    • Author(s)
      Y. Okamoto, K. Fujiwara, and Y. Ishihara
    • Organizer
      Proceedings of IEEE Conference on Electromagnetic Field Computation(CEFC 2010)
    • Place of Presentation
      Chicago USA
    • Year and Date
      2010-05-10
  • [Presentation] Recent progresses in the variational reduced-density-matrix method2010

    • Author(s)
      Maho Nakata
    • Organizer
      50th Sanibel Symposium
    • Place of Presentation
      Florida Georgia USA
    • Year and Date
      2010-02-24
  • [Presentation] Job Scheduling Parameter Configuration Focusing on Elapsed Time2010

    • Author(s)
      R. Ito
    • Organizer
      Euromicro Int l Conf. on Parallel, Distributed and network-based Processing, PDP2010
    • Place of Presentation
      Pisa
    • Year and Date
      2010-02-19
  • [Presentation] Quality control approach for systematic performance evaluation of linear solvers2010

    • Author(s)
      Shoji Itoh
    • Organizer
      第6回先進スーパーコンピューティング環境(ASE)研究会
    • Place of Presentation
      東京大学
    • Year and Date
      2010-02-12
  • [Book] Latest Developments in SDPA Family for Solving Large-Scale SDPs, Handbook on Semidefinite, Conic and Polynomial Optimization Series : Int l Series in Operations Research & Management Science2012

    • Author(s)
      M. Nakata(6名中6番目)
    • Total Pages
      687-714
  • [Book] A Massively Parallel Dense Symmetric Eigensolver with Communication Splitting Multicasting Algorithm, Lecture Notes in Computer Science2011

    • Author(s)
      Takahiro Katagiri and Shoji Itoh
    • Total Pages
      139-150
  • [Book] Systematic performance evaluation of linear solvers using quality control techniques, Software Automatic Tuning From Concepts to State-of-the-Art Results2010

    • Author(s)
      Shoji Itoh, Masaaki Sugihara
    • Total Pages
      135-152
    • Publisher
      Springer
  • [Remarks]

    • URL

      http://accc.riken.jp/Prj/

URL: 

Published: 2013-07-31  

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