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2011 Fiscal Year Final Research Report

Structural Chemistry on Information Transduction through Allosteric Effects in Heme Proteins

Research Project

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Project/Area Number 21350098
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Chemistry related to living body
Research InstitutionUniversity of Hyogo

Principal Investigator

KITAGAWA Teizo  兵庫県立大学, 大学院・生命理学研究科, 教授 (40029955)

Co-Investigator(Kenkyū-buntansha) OGURA Takashi  兵庫県立大学, 大学院・生命理学研究科, 教授 (70183770)
Project Period (FY) 2009 – 2011
Keywords生物無機化学 / 振動分光学 / アロステリック効果 / ガスセンサー蛋白 / ヘモグロビン / 情報伝達
Research Abstract

Structural chemistry involved in allosteric effects of heme proteins was investigated with visible and ultraviolet resonance Raman spectroscopy. About hemoglobin as a fundamental molecule, a quaternary structure of half-ligated state was quantitatively determined on the basis of inter-subunit interactions. As applications, information transduction pathway and its dynamics were elucidated with two oxygen sensor proteins, DOS and HemAT, and structural effects of effector binding was revelaed for an NO sensor protein, sGC. For respiration enzyme, proton pumping mechanism of a mammalian cytochrome c oxidase was examined.

  • Research Products

    (22 results)

All 2012 2011 2010 2009 Other

All Journal Article (12 results) Presentation (7 results) Book (1 results) Remarks (2 results)

  • [Journal Article] Effects of the bHLH domain on axial coordination of heme in the PAS-A domain of neuronal PAS domain protein 2(NPAS2): Conversion from His119/Cys170 coordination to His119/His171 coordination2012

    • Author(s)
      Uchida, T., H. Mizuki, M. Ishida, I. Sagami, T. Shimizu, K. Ishimori, and T. Kitagawa
    • Journal Title

      J. Inorg. Biochem

      Volume: 108 Pages: 188-195

  • [Journal Article] An intermediate conformational state during ligand binding to cytochrome c oxidase detected by time-resolved resonance Raman analyses of heme peripheral groups2012

    • Author(s)
      I. Ishigami, T. Nishigaki, K. Shinzawa-Itoh, S. Yoshikawa, S. Nakashima and T. Ogura
    • Journal Title

      Chem. Lett

      Volume: 2 Pages: 178-180

  • [Journal Article] Structural Dynamics of EcDOS Heme Domain Revealed by Time-Resolved Ultraviolet Resonance Raman Spectroscopy2011

    • Author(s)
      El-Mashtoly, S. F., M. Kubo, S. Nakashima, T. Shimizu, and T. Kitagawa
    • Journal Title

      J. Phys. Chem. Lett

      Volume: 2(17) Pages: 2212-2217

  • [Journal Article] A new way for understanding quaternary structure change of hemoglobin upon ligand binding on the basis of UV-resonance Raman evaluation of inter-subunit interactions2011

    • Author(s)
      Nagatomo, S., M. Nagai, and T. Kitagawa
    • Journal Title

      J. Am. Chem. Soc

      Volume: 133 Pages: 10101-10110

  • [Journal Article] Differences between two active forms of CO-bound soluble guanylate cyclase in the presence of activators and substrate and their populations revealed by resonance Raman spectroscopy2011

    • Author(s)
      Pal, B. and T. Kitagawa
    • Journal Title

      Ind. J. Chem

      Volume: 50A Pages: 395-400

  • [Journal Article] Applications of Vibrational Spectroscopy in the Study of Flavin-based Photoactive Proteins, in Spectroscopy2011

    • Author(s)
      Li, J. and T. Kitagawa
    • Journal Title

      Biomedical Applications

      Volume: 25 Pages: 261-269

  • [Journal Article] Resonance Raman spectroscopic investigation of structural changes of CO-heme in soluble guanylate cyclase generated by effectors and substrate2010

    • Author(s)
      Pal, B., K. Tanaka, S. Takenaka, and T. Kitagawa
    • Journal Title

      J. Raman Spectrosc

      Volume: 41 Pages: 1178-1184

  • [Journal Article] Binding of YC-1/BAY 41-2272 to soluble guanylate cyclase ; A new perspective to the mechanism of activation2010

    • Author(s)
      Pal, B. and T. Kitagawa
    • Journal Title

      Biochem. Biophys. Res. Commun

      Volume: 397 Pages: 375-379

  • [Journal Article] Differences in coordination states of substituted tyrosine residues and quaternary structures among hemoglobins M probed by resonance Raman spectroscopy2010

    • Author(s)
      Aki, Y., M. Nagai, Y. Nagai, K. Imai, M. Aki, A. Sato, M. Kubo, S. Nagatomo, and T. Kitagawa
    • Journal Title

      J. Biol. Inorg. Chem

      Volume: 15 Pages: 147-158

  • [Journal Article] Theβ-sheet structure pH dependence of the core fragments ofβ_2-microglobulin amyloid fibrils2010

    • Author(s)
      Hiramatsu, M., M. Lu, Y. Goto, and T. Kitagawa
    • Journal Title

      Bull. Chem. Soc. Jpn

      Volume: 83 Pages: 495-504

  • [Journal Article] Differences in the molecular structure ofβ_2-microglobulin between two morphologically different amyloid fibrils2010

    • Author(s)
      Hiramatsu, M., M. Lu, K. Matsuo, K. Gekko, Y. Goto, and T. Kitagawa
    • Journal Title

      Biochemistry

      Volume: 49 Pages: 742-751

  • [Journal Article] A Specific Interaction of L-Tryptophan with CO of CO-Bound Indoleamine 2, 3-Dioxygenase Identified by Resonance Raman Spectroscopy2010

    • Author(s)
      S. Yanagisawa, H. Sugimoto, Y. Shiro and T. Ogura
    • Journal Title

      Biochemistry

      Volume: 49 Pages: 10081-10088

  • [Presentation] Picobiological features in functions of heme proteins revealed by resonance Raman spectroscopy2012

    • Author(s)
      Kitagawa, T
    • Organizer
      14^<th> National Symposium in Chemistry
    • Place of Presentation
      National Institute for Interdisciplinary Science and Technology
    • Year and Date
      2012-02-05
  • [Presentation] Microsecond Protein Dynamics of Cytochrome c Oxidase as Studied with Resonance Raman Spectroscopy2011

    • Author(s)
      T. Ogura, I. Ishigami, T. Nishigaki, S. Nakashima, K. Shinzawa-Itoh and Shinya Yoshikawa
    • Organizer
      The 3rd Asian Spectroscopy Conference
    • Place of Presentation
      Xiamen University, China
    • Year and Date
      2011-11-29
  • [Presentation] Ultraviolet time-resolved resonance Raman investigation of structural dynamics of Hem-AT-Bs following CO photodissociation2011

    • Author(s)
      Kitagawa, T
    • Organizer
      15^<th> International Conference on Biological Inorganic Chemistry
    • Place of Presentation
      University of British Columbia, Vancouver, Canada
    • Year and Date
      2011-08-11
  • [Presentation] Resonance Raman study on CO-bound indoleamine 2, 3-dioxygenase2011

    • Author(s)
      T. Ogura, S. Yanagisawa, H. Sugimoto and Y. Shiro
    • Organizer
      The 3rd Georgian Bay International Conference on Bioinorganic Chemistry
    • Place of Presentation
      Stockey Centre, Parry Sound, Ontario, Canada
    • Year and Date
      2011-06-01
  • [Presentation] Evaluation of Inter-subunit Interactions in Half-ligated Human Adult Hemoglobin based on the Single Residue UVRR Spectra2010

    • Author(s)
      T. Kitagawa, S. Nagatomo and M. Nagai
    • Organizer
      12^<th> Intl. Conf. Raman Spectroscopy
    • Place of Presentation
      Boston Park Plaza Hotel(U. S. A.)
    • Year and Date
      20100800
  • [Presentation] Structural Chemisty of Information Communication in Oxyg en Sensor Protein, EcDOS, Revealed with Resonance Raman Spectroscopy2010

    • Author(s)
      T. Kitagawa, S. F. El-Mashtoly, S. Na kajima, H. Takahashi, A. Tanaka, an d T. Shimizu
    • Organizer
      6^<th> Intl. Conf. on Porphyrin and Ph thalocyanine
    • Place of Presentation
      Hyatt Rege nc Tamaya Resort & Spa(U. S. A.)
    • Year and Date
      20100700
  • [Presentation] Protein Dynamics of Cytochrome c Oxidase as Studied by Resonance Raman Spectroscopy2009

    • Author(s)
      T. Ogura, S. Nakashima, I. Ishigami, K. Shinzawa-Itoh and S. Yoshikawa
    • Organizer
      Symposium on Advanced Biological Inorganic Chemistry
    • Place of Presentation
      Tata Institute of Fundamental Research, Mumbai, India
    • Year and Date
      2009-11-06
  • [Book] Resonance Raman investigation of quaternary structure change in hemoglobin upon ligand binding in' Hemoglobin : Recent Development and Topics' ed. M. Nagai)2011

    • Author(s)
      Nagatomo, S. M. Nagai, and T. Kitagawa
    • Total Pages
      37-61
  • [Remarks]

    • URL

      http://www.ims.ac.jp/know/emeritus/kitagawa/index.html

  • [Remarks]

    • URL

      http://www.sci.u-hyogo.ac.jp/index-j.html

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Published: 2013-07-31  

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