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2011 Fiscal Year Final Research Report

Design of the fast computable similarities for tree-structured data and their extension to several discrete structures

Research Project

  • PDF
Project/Area Number 21500145
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Intelligent informatics
Research InstitutionKyushu Institute of Technology

Principal Investigator

HIRATA Kouichi  九州工業大学, 大学院・情報工学研究院, 准教授 (20274558)

Co-Investigator(Kenkyū-buntansha) KUBOYAMA Tetsuji  学習院大学, 計算機センター, 准教授 (80302660)
Project Period (FY) 2009 – 2011
Keywords木構造の類似度 / 木の編集距離 / 順序木 / 無順序木 / 局所頻度距離 / 二分木符号 / 木カーネル
Research Abstract

This research introduced a new hierarchy of the tree edit distance and improved both the MAXSNP-hardness of computing the unordered tree edit distance and the time complexity for the tractable variations of it. Also it introduced both the local frequency distance, which runs in linear time, with constant factor lower bound of the ordered tree edit distance and the string edit distance of binary tree codes, which runs in quadratic time, with both the constant factor lower bound and the upper bound. Furthermore, it designed the tree kernel based on them.

  • Research Products

    (56 results)

All 2012 2011 2010 2009 Other

All Journal Article (28 results) (of which Peer Reviewed: 28 results) Presentation (26 results) Book (1 results) Remarks (1 results)

  • [Journal Article] An A* Algorithm for Computing Edit Distance between Rooted Labeled Unordered Trees2012

    • Author(s)
      S. Higuchi, T. Kan, Y. Yamamoto, K. Hirata
    • Journal Title

      New Frontiers in Artificial Intelligence, Lecture Notes in Artificial Intelligence

      Volume: (to appear)

    • Peer Reviewed
  • [Journal Article] On Computing Tractable Variations of Unordered Tree Edit Distance with Network Algorithms2012

    • Author(s)
      Y. Yamamoto, K. Hirata, T. Kuboyama
    • Journal Title

      New Frontiers in Artificial Intelligence, Lecture Notes in Artificial Intelligence

      Volume: (to appear)

    • Peer Reviewed
  • [Journal Article] Extracting Research Communities from Bibliographic Data2012

    • Author(s)
      Y. Nakamura, T. Horiike, T. Kuboyama, H. Sakamoto
    • Journal Title

      KES Journal

      Volume: 16 Pages: 25-34

    • Peer Reviewed
  • [Journal Article] 部分パスに基づいた木カーネル2011

    • Author(s)
      木村大翼, 久保山哲二, 渋谷哲朗, 鹿島久嗣
    • Journal Title

      人工知能学会論文誌

      Volume: 26 Pages: 473-482

    • Peer Reviewed
  • [Journal Article] Improved MAX SNP-Hard Results for Finding an Edit Distances between Unordered Trees, Proc2011

    • Author(s)
      K. Hirata, Y. Yamamoto, T. Kuboyama
    • Journal Title

      22^<nd> Annual Symposium on Combinatorial Pattern Matching(CPM2011), Lecture Notes in Computer Science

      Volume: 6661 Pages: 402-415

    • Peer Reviewed
  • [Journal Article] A Bottom-Up Edit Distance between Rooted Labeled Trees, Proc2011

    • Author(s)
      Y. Yamamoto, K. Hirata, T. Kuboyama
    • Journal Title

      7^<th> Workshop on Learning with Logics and Logics for Learning(LLLL2011)

      Pages: 26-33

    • Peer Reviewed
  • [Journal Article] On Learning Dyck-Typed Regular Translation Elementary Formal Systems with Tag Operations between XML Documents, Proc2011

    • Author(s)
      N. Sugimoto, K. Hirata
    • Journal Title

      7^<th> Workshop on Learning with Logics and Logics for Learning(LLLL2011)

      Pages: 4-10

    • Peer Reviewed
  • [Journal Article] Broom Distance between Rooted Labeled Trees, Proc2011

    • Author(s)
      T. Kuboyama, K. Hirata
    • Journal Title

      7^<th> Workshop on Learning with Logics and Logics for Learning(LLLL2011)

      Pages: 34-41

    • Peer Reviewed
  • [Journal Article] Discovering Global Propagation for Influenza A Viruses Based on Robinson-Foulds Distance between Phylogenetic Trees, Proc2011

    • Author(s)
      K. Sata, K. Hirata, K. Ito, T. Kuboyama
    • Journal Title

      Annual International Conference on BioInformatics and Computational Biology(BICB2011)

      Pages: B12-B17

    • Peer Reviewed
  • [Journal Article] Predicting Mutations of Influenza Virus HA Genes Using Dimentionality Reduction of Hamming Distance Space, Proc2011

    • Author(s)
      T. Kuboyama, K. Ito, K. Hirata, H. Sakamoto
    • Journal Title

      Annual International Conference on BioInformatics and Computational Biology(BICB2011)

      Pages: B43

    • Peer Reviewed
  • [Journal Article] Scalable Detection of Frequent Substrings by Grammar-Based Compression, Proc2011

    • Author(s)
      M. Nakahara, S. Maruyama, T. Kuboyama, H. Sakamoto
    • Journal Title

      14^<th> International Conference on Discovery Science(DS2011), Lecture Notes in Artificial Intelligence

      Volume: 6926 Pages: 236-246

    • Peer Reviewed
  • [Journal Article] Mapping Kernels for Trees. Proc2011

    • Author(s)
      K. Shin, M. Cuturi, T. Kuboyama
    • Journal Title

      28^<th> International Conference on Machine Learning(ICML 2011)

      Pages: 961-968

    • Peer Reviewed
  • [Journal Article] Approximating Tree Edit Distance through String Edit Distance for Binary Tree Code2010

    • Author(s)
      T. Aratsu, K. Hirata, T. Kuboyam
    • Journal Title

      Fundamenta Informaticae

      Volume: 101 Pages: 1-15

    • Peer Reviewed
  • [Journal Article] A Generalization of Haussler' s Convolution Kernel-Mapping Kernel and Its Application to Tree Kernels2010

    • Author(s)
      K. Shin, T. Kuboyama
    • Journal Title

      J. Comput. Sci. Technol

      Volume: 25 Pages: 1040-1054

    • Peer Reviewed
  • [Journal Article] Mining Frequent k-Partite Episodes from Event Sequences, New Frontiers in Artificial Intelligence2010

    • Author(s)
      T. Katoh, H. Arimura, K. Hirata
    • Journal Title

      Lecture Notes in Artificial Intelligence

      Volume: 6284 Pages: 331-344

    • Peer Reviewed
  • [Journal Article] Temporal Interrelations of Bacteria Based on the Occurrence Time, Proc2010

    • Author(s)
      K. Hirata, K. Motoyama, S. Yokoyama, K. Matsuoka
    • Journal Title

      2010 ICME International Conference on Complex Medical Engineering(CME2010)

      Pages: 188-192

    • Peer Reviewed
  • [Journal Article] Aligned Bipartite Episodes between the Genera of Bacteria, Proc2010

    • Author(s)
      T. Katoh, K. Hirata, H. Arimura, S. Yokoyama, K. Matsuoka
    • Journal Title

      2010 ICME International Conference on Complex Medical Engineering(CME2010)

      Pages: 193-197

    • Peer Reviewed
  • [Journal Article] An Efficient Depth-First Search Algorithm for Extracting Frequent Diamond Episodes from Event Sequences2009

    • Author(s)
      T. Katoh, H. Arimura, K. Hirata
    • Journal Title

      IPSJ Transactions on Databases

      Volume: 2 Pages: 143-151

    • Peer Reviewed
  • [Journal Article] Polynomial Summaries of Positive Semidefinite Kernels2009

    • Author(s)
      K. Shin, T. Kuboyama
    • Journal Title

      Theor. Comput. Sci

      Volume: 410 Pages: 1847-1862

    • Peer Reviewed
  • [Journal Article] Mining Frequent Bipartite Episodes from Event Sequences, Proc2009

    • Author(s)
      T. Katoh, H. Arimura, K. Hirata
    • Journal Title

      12th International Conference on Discovery Science(DS2009), Lecture Notes in Artificial Intelligence

      Volume: 5808 Pages: 136-151

    • Peer Reviewed
  • [Journal Article] Discovering Networks for Global Propagation of Influenza A(H3N2) Viruses by Clustering, Proc2009

    • Author(s)
      K. Sata, K. Hirata, K. Ito, T. Kuboyama
    • Journal Title

      13^<th> International Conference on Knowledge-Based and Intelligent Information & Management Systems(KES2009), Lecture Notes in Artificial Intelligence

      Volume: 5712 Pages: 490-497

    • Peer Reviewed
  • [Journal Article] Extracting Research Communities by Improved Maximum Flow Algorithm. Proc2009

    • Author(s)
      T. Horiike, Y. Takahashi, T. Kuboyama, H. Sakamoto
    • Journal Title

      13^<th> International Conference on Knowledge-Based and Intelligent Information & Management Systems(KES2009), Lecture Notes in Artificial Intelligence

      Volume: 5712 Pages: 472-479

    • Peer Reviewed
  • [Journal Article] Local Frequency Distances for Rooted Ordered Trees, Proc2009

    • Author(s)
      T. Aratsu, K. Hirata, T. Kuboyama
    • Journal Title

      6th Workshop on Learning with logics and Logics for Learning(LLLL2009)

      Pages: 11-18

    • Peer Reviewed
  • [Journal Article] Mining Frequent k-Partite Episodes from Event Sequences, Proc2009

    • Author(s)
      T. Katoh, H. Arimura, K. Hirata
    • Journal Title

      6th Workshop on Learning with logics and Logics for Learning(LLLL2009)

      Pages: 43-50

    • Peer Reviewed
  • [Journal Article] A Polynomial-Delay Polynomial-Space Algorithm for Extracting Frequent Diamond Episodes from Event Sequences, Proc2009

    • Author(s)
      T. Katoh, H. Arimura, K. Hirata
    • Journal Title

      13^<th> Pacific-Asia Conference on Knowledge Discovery and Data Mining(PAKDD2009), Lecture Notes in Artificial Intelligence

      Volume: 5476 Pages: 172-183

    • Peer Reviewed
  • [Journal Article] A Tree Distance Function Based on Multi-sets, Proc2009

    • Author(s)
      A. J. Muller Molina, K. Hirata, T. Shinohara
    • Journal Title

      JSAI PAKDD 2008 Post-Workshop Proceedings, Lecture Notes in Artificial Intelligence

      Volume: 5433 Pages: 87-98

    • Peer Reviewed
  • [Journal Article] Sibling Distance for Rooted Labeled Trees, Proc2009

    • Author(s)
      T. Aratsu, K. Hirata, T. Kuboyama
    • Journal Title

      JSAI PAKDD 2008 Post-Workshop Proceedings, Lecture Notes in Artificial Intelligence

      Volume: 5433 Pages: 99-110

    • Peer Reviewed
  • [Journal Article] Extracting Sequential Episodes Representing Replacements of Bacteria from Bacterial Culture Data, Proc2009

    • Author(s)
      T. Katoh, K. Hirata, H. Arimura, S. Yokoyama, K. Matsuoka
    • Journal Title

      2009 IEEE/ ICME International Conference on Complex Medical Engineering(CME2009)

      Pages: 4

    • Peer Reviewed
  • [Presentation] 木の断片距離:木の編集距離の新たな階層2012

    • Author(s)
      菅智宏, 平田耕一
    • Organizer
      火の国情報シンポジウム2012
    • Place of Presentation
      九州工業大学(飯塚市)
    • Year and Date
      20120315-16
  • [Presentation] 薬剤感受性検査データからの出現間隔付き菌交代規則の抽出2012

    • Author(s)
      余村有佳, 平田耕一
    • Organizer
      第85回人工知能学会基本問題研究会
    • Place of Presentation
      下呂交流会館(下呂市)
    • Year and Date
      20120202-03
  • [Presentation] 無順序木に対する孤立部分木包含問題2012

    • Author(s)
      外園貴洋, 山本恭之, 菅智宏, 平田耕一
    • Organizer
      第85回人工知能学会基本問題研究会
    • Place of Presentation
      下呂交流会館(下呂市)
    • Year and Date
      20120202-03
  • [Presentation] 大規模ネットワークデータ分析のためのデータ圧縮ツール2012

    • Author(s)
      松本美玲, 山抱由依, 中原昌哉, 久保山哲二, 坂本比呂志
    • Organizer
      第85回人工知能学会基本問題研究会
    • Place of Presentation
      下呂交流会館(下呂市)
    • Year and Date
      20120202-03
  • [Presentation] インフルエンザウイルスにおけるパッケージングシグナルの進化系統解析2011

    • Author(s)
      牧野俊亮, 平田耕一
    • Organizer
      第84回人工知能学会基本問題研究会
    • Place of Presentation
      慶応義塾大学(横浜市)
    • Year and Date
      20111215-16
  • [Presentation] 薬剤感受性検査データからの共変薬剤耐性の抽出2011

    • Author(s)
      李候偉, 平田耕一
    • Organizer
      第84回人工知能学会基本問題研究会
    • Place of Presentation
      慶応義塾大学(横浜市)
    • Year and Date
      20111215-16
  • [Presentation] 木の高差兄弟文字列距離と編集距離の関係について2011

    • Author(s)
      菅智宏, 平田耕一
    • Organizer
      第84回人工知能学会基本問題研究会
    • Place of Presentation
      慶応義塾大学(横浜市)
    • Year and Date
      20111215-16
  • [Presentation] A*アルゴリズムによるラベル付き無順序木の編集距離の計算2011

    • Author(s)
      樋口鐘一, 菅智宏, 山本恭之, 平田耕一
    • Organizer
      第82回人工知能学会基本問題研究会
    • Place of Presentation
      釧路工業高等専門学校(釧路市)
    • Year and Date
      20110804-05
  • [Presentation] ネットワークアルゴリズムの違いによる無順序編集距離の変種の計算2011

    • Author(s)
      山本恭之, 平田耕一, 久保山哲二
    • Organizer
      第82回人工知能学会基本問題研究会
    • Place of Presentation
      釧路工業高等専門学校(釧路市)
    • Year and Date
      20110804-05
  • [Presentation] 根付き無順序木の編集距離とその変種の比較2011

    • Author(s)
      山本恭之, 有福洋史, 平田耕一
    • Organizer
      火の国情報シンポジウム2011
    • Place of Presentation
      福岡大学(福岡市)
    • Year and Date
      20110308-09
  • [Presentation] インフルエンザウイルスの塩基配列からの正規圧縮距離に基づく系統樹推定2011

    • Author(s)
      牧野俊亮, 佐田和也, 平田耕一
    • Organizer
      火の国情報シンポジウム2011
    • Place of Presentation
      福岡大学(福岡市)
    • Year and Date
      20110308-09
  • [Presentation] 薬剤感受性検査データにおける薬剤耐性変化の時系列解析2011

    • Author(s)
      李宏偉, 平田耕一
    • Organizer
      火の国情報シンポジウム2011
    • Place of Presentation
      福岡大学(福岡市)
    • Year and Date
      20110308-09
  • [Presentation] 進化系統樹のRobinson-Flouds距離を用いたインフルエンザウイルスの地位間遷移解析2011

    • Author(s)
      佐田和也, 平田耕一, 伊藤公人, 久保山哲二
    • Organizer
      第81回人工知能学会基本問題研究会
    • Place of Presentation
      山梨大学(甲府市)
    • Year and Date
      20110131-0201
  • [Presentation] インフルエンザウイルスのRNA分節に生じる共変異の抽出2011

    • Author(s)
      櫨本竜也, 平田耕一, 伊藤公人
    • Organizer
      第81回人工知能学会基本問題研究会
    • Place of Presentation
      山梨大学(甲府市)
    • Year and Date
      20110131-0201
  • [Presentation] 論文データからの関連情報抽出2011

    • Author(s)
      中村優士, 堀池寿彦, 久保山哲二, 坂本比呂志
    • Organizer
      第81回人工知能学会基本問題研究会
    • Place of Presentation
      山梨大学(甲府市)
    • Year and Date
      20110131-0201
  • [Presentation] 自由度1及び2の分割自由カーネル2010

    • Author(s)
      申吉浩, 久保山哲二
    • Organizer
      第79回人工知能学会基本問題研究会
    • Place of Presentation
      北海道大学(札幌市)
    • Year and Date
      20100924-25
  • [Presentation] 細菌検査データからの頻出二部エピソードの抽出2010

    • Author(s)
      河東孝, 有村博紀, 平田耕一
    • Organizer
      第79回人工知能学会基本問題研究会
    • Place of Presentation
      北海道大学(札幌市)
    • Year and Date
      20100924-25
  • [Presentation] アミノ酸の高次元符号化によるインフルエンザウイルスの抗原変異予測2010

    • Author(s)
      久保山哲二, 申吉浩, 伊藤公人, 平田耕一
    • Organizer
      第78回人工知能学会基本問題研究会
    • Place of Presentation
      兵庫県立大学(神戸市)
    • Year and Date
      20100731-0801
  • [Presentation] ラベル付き根付き順序木のボトムアップ距離2010

    • Author(s)
      山本恭之, 平田耕一, 林田崇佑, 久保山哲二
    • Organizer
      第78回人工知能学会基本問題研究会
    • Place of Presentation
      兵庫県立大学(神戸市)
    • Year and Date
      20100731-0801
  • [Presentation] 進化系統樹を用いたH3N2亜型インフルエンザウイルスの地域間遷移解析2010

    • Author(s)
      佐田和也, 瀧口伸弥, 本田晃悠, 平田耕一
    • Organizer
      第77回人工知能学会基本問題研究会
    • Place of Presentation
      北海道大学(札幌)
    • Year and Date
      20100317-18
  • [Presentation] ハミング距離空間の次元削減によるインフルエンザウイルス遺伝子変異の解析2010

    • Author(s)
      久保山哲二, 伊藤公人
    • Organizer
      第77回人工知能学会基本問題研究会
    • Place of Presentation
      北海道大学(札幌)
    • Year and Date
      20100317-18
  • [Presentation] 時刻と時間幅に基づく菌交代規則の抽出2010

    • Author(s)
      本山健一郎, 平田耕一
    • Organizer
      第76回学会基本問題研究会
    • Place of Presentation
      崇城大学(熊本)
    • Year and Date
      20100127-28
  • [Presentation] 極小出現を用いた頻出多部エピソードの効率のよい発見アルゴリズム2010

    • Author(s)
      河東孝, 有村博紀, 平田耕一
    • Organizer
      第76回学会基本問題研究会
    • Place of Presentation
      崇城大学(熊本)
    • Year and Date
      20100127-28
  • [Presentation] 局所ラベル木の文字列表現と編集距離2010

    • Author(s)
      林田崇佑, 柴田智博, 平田耕一
    • Organizer
      第76回人工知能学会基本問題研究会
    • Place of Presentation
      崇城大学(熊本)
    • Year and Date
      20100127-28
  • [Presentation] 無順序木編集距離のMAX SNP困難性について2010

    • Author(s)
      平田耕一, 山本恭之, 久保山哲二
    • Organizer
      第80回人工知能学会基本問題研究会
    • Place of Presentation
      CIC・キャンパスイノベーションセンター(東京都)
    • Year and Date
      2010-11-17
  • [Presentation] 超グラフの非巡回度と非巡回部分超グラフの発見問題2009

    • Author(s)
      大梧諦真, 平田耕一
    • Organizer
      第74回人工知能学会基本問題研究会
    • Place of Presentation
      広島市立大学(広島)
    • Year and Date
      20090914-15
  • [Book] The Sixth Workshop on Learning with Logics and Logics for Learning(LLLL2009), JSAI-isAI Workshops 2009, New Frontiers in Artificial Intelligence, Lecture Notes in Computer Science 62842009

    • Author(s)
      A. Yamamoto, K. Hirata, S. Minato
    • Total Pages
      315-316
  • [Remarks] 論文リスト

    • URL

      http://www.dumbo.ai.kyutech.ac.jp/hirata/papers/papers.html

URL: 

Published: 2013-07-31  

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