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2011 Fiscal Year Final Research Report

Resonance Raman Study on the Proton Pumping Mechanism of Cytochrome c Oxidase

Research Project

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Project/Area Number 21570171
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionUniversity of Hyogo

Principal Investigator

OGURA Takashi  兵庫県立大学, 大学院・生命理学研究科, 教授 (70183770)

Research Collaborator YANAGISAWA Sachiko  兵庫県立大学, 大学院・生命理学研究科, 助教 (60557982)
NAKASHIMA Satoru  兵庫県立大学, 大学院・生命理学研究科, 特任准教授 (80263234)
KUBO Minoru  兵庫県立大学, 大学院・生命理学研究科, 特任助教 (90392878)
Project Period (FY) 2009 – 2011
Keywords好気呼吸 / 生体エネルギー変換 / チトクロムC酸化酵素 / 酸素還元 / プロトンポンプ / 共鳴ラマン / 部位特異的アミノ酸置換
Research Abstract

Cytochrome c oxidase plays an essentially important function in cell respiration to maintain life, and catalyzes dioxygen reduction to water, which is coupled with proton pumping across the membrane. In order to elucidate the mechanism of this enzyme, high resolution structures at a picometer level are to be determined by resonance Raman spectroscopy. In the present study, we have established assignments of some Raman siganals. In addition, an intermediate conformational state and cooperative dynamics of the two hemes have been detected, which are essential for an efficient proton pump.

  • Research Products

    (26 results)

All 2012 2011 Other

All Journal Article (4 results) Presentation (20 results) Remarks (2 results)

  • [Journal Article] An intermediate conformational state during ligand binding to cytochrome c oxidase detected by time-resolved resonance Raman analyses of heme peripheral groups2012

    • Author(s)
      Izumi Ishigami, Takeshi Nishigaki, Kyoko Shinzawa-Itoh, Shinya Yoshikawa, Satoru Nakashima and Takashi Ogura
    • Journal Title

      Chem. Lett.

      Volume: 2 Pages: 178-180

    • DOI

      DOI:10.1246/cl.2012.178.

  • [Journal Article] T-quaternary structure of oxy human adult hemoglobin in the presence of two allosteric effectors, L35 and IHP2011

    • Author(s)
      Kenji Kanaori, Yusuke Tajiri, Antonio Tsuneshige, Izumi Ishigami, Takashi Ogura, Kunihiko Tajima, Saburo Neya and Takashi Yonetani
    • Journal Title

      Biochim. Biophys. Acta-Bioenergetics

      Volume: 1807 Pages: 1253-1261

    • DOI

      DOI:10.1016/j.bbabio.2011.06.004.

  • [Journal Article] Post-translational His-Cys Cross Linkage Formation in Tyrosinase Induced by Copper(II)-Peroxo Species2011

    • Author(s)
      Nobutaka Fujieda, Takuya Ikeda, Michiaki Murata, Sachiko Yanagisawa, Shigetoshi Aono, Kei Okubo, Satoshi Nagao, Takashi Ogura, Shun Hirota, Shunichi Fukuzumi, Yukihiro Nakamura, Yoji Hata, and Shinobu Itoh
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 133 Pages: 1180-1183

    • DOI

      doi:10.1021/ja108280w.

  • [Journal Article] Resonance Raman study on the oxygenated and the ferryl-oxo species of indoleamine 2, 3-dioxygenase during catalytic turnover2011

    • Author(s)
      Sachiko Yanagisawa, Masaki Horitani, Hiroshi Sugimoto, Yoshitsugu Shiro, Norihiro Okada, and Takashi Ogura
    • Journal Title

      Faraday Disc

      Volume: 148 Pages: 239-247

    • DOI

      DOI:10.1039/c004552g.

  • [Presentation] チトクロムc酸化酵素におけるヘムa側鎖ヒドロキシファルネシルエチル基の共鳴ラマン線の帰属2012

    • Author(s)
      坂口美幸, その他
    • Organizer
      日本化学会第92春季年会
    • Place of Presentation
      慶応大学、神奈川県
    • Year and Date
      2012-03-27
  • [Presentation] フェムト秒レーザーを用いた高感度時間分解赤外分光装置の開発と蛋白質水溶液への応用2011

    • Author(s)
      久保稔, その他
    • Organizer
      日本分光学会年次講演会
    • Place of Presentation
      理化学研究所、神奈川県
    • Year and Date
      2011-12-02
  • [Presentation] Protein Dy namics of and Reaction Mechanism of Cytochrome c Oxidaseas Studied with Resonance Raman Spectroscop y2011

    • Author(s)
      Izumi Ishigami, et al.
    • Organizer
      The 3rd Asian Spectroscopy Conference
    • Place of Presentation
      Xiamen University, China
    • Year and Date
      2011-11-30
  • [Presentation] Microsecond Protein Dynamics of Cytochrome c Oxidase as Studied with Resonanc e Raman Spectroscopy2011

    • Author(s)
      Takashi Ogura, et al.
    • Organizer
      The 3rd Asian Spectroscopy Conference
    • Place of Presentation
      Xiamen University, China
    • Year and Date
      2011-11-29
  • [Presentation] 水溶液中のタンパク質の高感度時間分解赤外分光測定2011

    • Author(s)
      久保稔, その他
    • Organizer
      第5回分子科学討論会
    • Place of Presentation
      札幌コンベンションセンター、北海道
    • Year and Date
      2011-09-20
  • [Presentation] ヘム鉄の電子密度がミオグロビンの自動酸化反応に与える影響の解明2011

    • Author(s)
      西村龍, その他
    • Organizer
      錯体化学会第61回討論会
    • Place of Presentation
      岡山理科大学、岡山県
    • Year and Date
      2011-09-18
  • [Presentation] Resonance Raman Study on Cytochrome c Oxida se Reconstituted in Phospholipid Vesicles2011

    • Author(s)
      Takashi Nomura, et al.
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      兵庫県立大学、兵庫県
    • Year and Date
      2011-09-17
  • [Presentation] Protein Dy namics and Reaction Mechanism of Cytochrome c Oxidase : Resonance R aman Spectroscopy2011

    • Author(s)
      Izumi Ishigami, et al.
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      兵庫県立大学、兵庫県
    • Year and Date
      2011-09-17
  • [Presentation] Resonance R aman Study on Ligand-Bound Forms of Indoleamine 2, 3-Dioxygenase2011

    • Author(s)
      Masayuki Hara, et al.
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      兵庫県立大学、兵庫県
    • Year and Date
      2011-09-17
  • [Presentation] Resona nce Raman Study on CO-bound Indol eamine 2, 3-Dioxygenase with Tryp tophan2011

    • Author(s)
      Sachiko Yanagisawa, et al.
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      兵庫県立大学、兵庫県
    • Year and Date
      2011-09-17
  • [Presentation] The chem ical nature of the ligand at the oxygen reduction site of the rest ing oxidized cytochrome c oxidase2011

    • Author(s)
      Miyuki Sakaguchi, et al.
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      兵庫県立大学、兵庫県
    • Year and Date
      2011-09-17
  • [Presentation] Protein Dynamics of Cytochrome c Oxidase upon CN-Photolysis as Studied w ith Resonance Raman Spectroscopy2011

    • Author(s)
      Takeshi Nishigaki, et al.
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      兵庫県立大学、兵庫県
    • Year and Date
      2011-09-17
  • [Presentation] Resonan ce Raman study on the ferryl oxo hemes with imidazole as axilal li gand having a bulky substituent2011

    • Author(s)
      Hirohito Ishimaru, et al.
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      兵庫県立大学、兵庫県
    • Year and Date
      2011-09-17
  • [Presentation] Structura l analysis of FMN and iron-sulfur clusters of bovine heart NADH-ub iquinone oxidoreductase by resona nce Raman spectroscopy2011

    • Author(s)
      Masahide Hikita, et al.
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      兵庫県立大学、兵庫県
    • Year and Date
      2011-09-17
  • [Presentation] 共鳴ラマン分光法によるウシ心筋NADH-ユビキノン酸化還元酵素のFMNとFe-Sクラスターの構造解析2011

    • Author(s)
      引田理英, その他
    • Organizer
      第38回生体分子科学討論会
    • Place of Presentation
      筑波大学、茨城県
    • Year and Date
      2011-06-24
  • [Presentation] 共鳴ラマン分光法によるインドールアミン2, 3ジオキシゲナーゼの光学異性依存的基質相互作用の検出2011

    • Author(s)
      柳澤幸子, その他
    • Organizer
      第38回生体分子科学討論会
    • Place of Presentation
      筑波大学、茨城県
    • Year and Date
      2011-06-24
  • [Presentation] チトクロム酸化酵素のリガンド解離構造ダイナミクス:新規高精度時間分解赤外分光装置を用いた追跡2011

    • Author(s)
      中島聡, その他
    • Organizer
      第38回生体分子科学討論会
    • Place of Presentation
      筑波大学、茨城県
    • Year and Date
      2011-06-24
  • [Presentation] CO光解離をトリガーとしたチトクロムc酸化酵素の構造ダイナミクスの追跡2011

    • Author(s)
      石上泉, その他
    • Organizer
      第38回生体分子科学討論会
    • Place of Presentation
      筑波大学、茨城県
    • Year and Date
      2011-06-24
  • [Presentation] ミオグロビンの機能調節機構の解明2011

    • Author(s)
      西村龍, その他
    • Organizer
      第38回生体分子科学討論会
    • Place of Presentation
      筑波大学、茨城県
    • Year and Date
      2011-06-23
  • [Presentation] Resonance Raman st udy on CO-bound indoleamine 2, 3-dioxygenase2011

    • Author(s)
      Takashi Ogura
    • Organizer
      The 3rd Georgian Bay International Conference on Bioi norganic Chemistry
    • Place of Presentation
      Stockey Centre, Parry Sound, Ont ario, Canada
    • Year and Date
      2011-06-01
  • [Remarks] ホームページ:(研究一覧:

    • URL

      http://lib.laic.u-hyogo.ac.jp/laic/2/annual_list.html

  • [Remarks] 市民講演会開催「ピコバイオロジー:原子レベルの生命科学」「ナノ」よりミクロな「ピコ」、「ピコバイオロジー」ってなんだろう。第49回日本生物物理学会年会実行委員会主催、平成23年9月19日、姫路商工会議所、兵庫県。

    • URL

      http://www.sci.u-hyogo.ac.jp/life/GCOE/index-j.html

URL: 

Published: 2013-07-31  

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