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2011 Fiscal Year Final Research Report

Quantitative analysis of cell-cell interaction responsible for the robustness of development

Research Project

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Project/Area Number 21570226
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Developmental biology
Research InstitutionHiroshima University

Principal Investigator

YAMAMOTO Takashi  広島大学, 大学院・理学研究科, 教授 (90244102)

Co-Investigator(Kenkyū-buntansha) SAKAKMOTO Naoaki  広島大学, 大学院・理学研究科, 准教授 (00332338)
SHIBATA Tatsuo  理化学研究所, 発生再生科学総合研究センター, ユニットリーダー (10359888)
Project Period (FY) 2009 – 2011
Keywords発生・分化 / 遺伝子 / ゲノム / 発生制御 / ゆらぎ
Research Abstract

To quantitate the cell-cell interaction during development, we tried to establish the system for quantification of two reporter genes in sea urchin embryo. However, we could not observe the relation between the levels of two reporter gene expressions. Next we analyzed the expression in mesenchyme cells using knock-in embryos generated by ZFN-mediated gene addition, and found that there was variations in expression levels among primary mesenchyme cells dependent on the changes of cell-cell interaction.

  • Research Products

    (61 results)

All 2012 2011 2010 2009 Other

All Journal Article (16 results) (of which Peer Reviewed: 15 results) Presentation (40 results) Book (3 results) Remarks (1 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Nucleosome exclusion from the interspecies conserved central AT-rich region of the Arsinsulater2012

    • Author(s)
      Takagi H, Inai Watanabe SI, Tatemoto S, Yajima M, Akasaka K, Yamamoto T, SakamotoN
    • Journal Title

      J. Biochem

      Volume: 151(1) Pages: 78-87

    • Peer Reviewed
  • [Journal Article] Activation Kinetics of RAF Protein in theTernary Complex of RAF, RAS-GTP, andKinase on the Plasma Membrane of LivingCells2011

    • Author(s)
      Hibino K, Shibata T, Yanagida T, Sako Y
    • Journal Title

      SINGLE-MOLECULE IMAGINGANALYSIS, Journal of Biological Chemistry

      Volume: 286 Pages: 36460-36468

    • Peer Reviewed
  • [Journal Article] HpSumf1 is involved in the activation of sulafatases responsible for regulation of skeletogenesisduring sea urchin development2011

    • Author(s)
      Sakuma T, Ohnishi K, Fujita K, Ochia H, Sakamoto N, Yamamoto T.
    • Journal Title

      Development Genes and Evolution

      Volume: 221(3) Pages: 157-166

    • Peer Reviewed
  • [Journal Article] Robust network clocks : Design of genetic oscillators as a complex combinatorial optimization problem2011

    • Author(s)
      Kobayashi Y, Shibata T, Kuramoto Y, Mikhailov AS
    • Journal Title

      Phys RevE Stat Nonlin Soft Matter Phys

      Volume: (6Pt1) Pages: 060901

    • Peer Reviewed
  • [Journal Article] Hierarchical organization of noise generates spontaneous signal in Paramecium cell2011

    • Author(s)
      Ooyama S, Shibata T
    • Journal Title

      Journal of Theoretical Biology

      Volume: 283 Pages: 1-9

    • Peer Reviewed
  • [Journal Article] Targeted mutagenesis in the sea urchin embryo usingzinc-finger nucleases2010

    • Author(s)
      Ochiai H, Fujita K, Suzuki K, Nishikawa M, Shibata T, Sakamoto N, Yamamoto T.
    • Journal Title

      Genes to Cells

      Volume: 15 Pages: 875-885

    • Peer Reviewed
  • [Journal Article] Dicer is required for the normalde velopment of sea urchin2010

    • Author(s)
      Okamitsu Y, Yamamoto T, Fujii T, Ochiai H, Sakamoto N
    • Journal Title

      Hemicentrotus pulcherrimus. Zoological Science

      Volume: 27 Pages: 477-486

    • Peer Reviewed
  • [Journal Article] Mammalian arylsulfatase A functions as a novel component of the extracellular matrix2010

    • Author(s)
      Fujita K, Teramura N, Hattori S, Irie S, Mitsunaga-Nakatsubo K, Akimoto Y, SakamotoN, Yamamoto T, Akasaka K.
    • Journal Title

      Connective Tissue Research

      Volume: 51 Pages: 388-396

    • Peer Reviewed
  • [Journal Article] Implication of HpEts in gene regulatory networks responsible for specification of seaurchin sleletogenic primary me senchyme cells2010

    • Author(s)
      Yajima M, Umeda R, Fuchikami T, Kataoka M, Sakamoto N, Yamamoto T, Akasaka K.
    • Journal Title

      Zoological Science

      Volume: 27 Pages: 638-646

    • Peer Reviewed
  • [Journal Article] Self-organization of the phosph atidylinositol lipids ingnaling system for random cell migration2010

    • Author(s)
      Arai Y, Shibata T, Matsuoka S, Sato MJ, Yanagida T, Ueda M.
    • Journal Title

      Proc Natl Acad Sci USA

      Volume: 107 Pages: 12399-12404

    • Peer Reviewed
  • [Journal Article] Nonadaptive fluctuation in an adaptive sensory system : bacterial chemoreceptor2010

    • Author(s)
      Nishikawa M, Shibata T
    • Journal Title

      PLoS One

      Volume: 5 Pages: 11224

    • Peer Reviewed
  • [Journal Article] HpSulf, a heparin sulfate 6-O-endosulfatase, is involved in the regulation of VEGF signaling during seaurchin development2009

    • Author(s)
      Fujita K, Takechi E, Sakamoto N, SumiyoshiN, Izumi S, Miyamoto T, Matsuura S, Tsurugaya T, Akasaka K, Yamamoto T.
    • Journal Title

      Mechanisms of Development

      Volume: 127 Pages: 235-245

    • Peer Reviewed
  • [Journal Article] Ueda M Statistical analysis of lateral diffusion and multistate kinetics in single-molecule imaging2009

    • Author(s)
      Matsuoka S, Shibata T
    • Journal Title

      Biophysical Journal

      Volume: 97 Pages: 1115-1124

    • Peer Reviewed
  • [Journal Article] Role of the nanos homolog during sea urchin development2009

    • Author(s)
      Fujii T, Sakamoto N, Ochiai H, Fujita K, Okamitsu Y, Sumiyoshi N, Minokawa T, Yamamoto T.
    • Journal Title

      Developmental Dynamics

      Volume: 238 Pages: 2511-2521

    • Peer Reviewed
  • [Journal Article] Suppressor of hairless(Su(H)) is required for foregut development in the sea urchin embryo2009

    • Author(s)
      Karasawa K, Sakamoto N, Fujita K, Ochiai H, Fujii T, Akasaka K, Yamamoto T.
    • Journal Title

      Zoological Science

      Volume: 26 Pages: 686-690

    • Peer Reviewed
  • [Journal Article] 理論生物学の可能性をバクテリアの走化性を例に考える2009

    • Author(s)
      柴田達夫
    • Journal Title

      蛋白質核酸酵素

      Volume: 54 Pages: 1890-1898

  • [Presentation] Targeted insertion of reporter gene by zinc-finger nuclease mediated homologous recombination enables quantitative imaging of endogenous gene expression inliving sea urchin embryo2012

    • Author(s)
      Yamamoto Takashi
    • Organizer
      CDB symposium 2012 Quantitative biology
    • Place of Presentation
      神戸
    • Year and Date
      2012-03-27
  • [Presentation] Efficient production of knockout crickets using zinc-finger nucleases2012

    • Author(s)
      Watanabe Takahito
    • Organizer
      The 2^<nd> International Conference on the Cricket
    • Place of Presentation
      徳島
    • Year and Date
      2012-03-22
  • [Presentation] Genome editing usingartificial nucleases2012

    • Author(s)
      Yamamoto Takashi
    • Organizer
      The 2^<nd> International Conference on the Cricket
    • Place of Presentation
      徳島
    • Year and Date
      2012-03-22
  • [Presentation] 走化性シグナル伝達系の自己組織化と応答に実験と理論からアプローチする2011

    • Author(s)
      柴田達夫
    • Organizer
      日本発生生物学会秋季シンポジウム
    • Place of Presentation
      岡崎
    • Year and Date
      2011-12-20
  • [Presentation] 様々な生物での標的遺伝子改変を可能にするゲノム編集技術とその可能性2011

    • Author(s)
      山本卓
    • Organizer
      日本発生生物学会秋季シンポジウム
    • Place of Presentation
      岡崎
    • Year and Date
      2011-12-20
  • [Presentation] バフンウニCTCFホモログ(HpCTCF)のArsインスレーター結合能および機能の解析2011

    • Author(s)
      坂本尚昭
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2011-12-15
  • [Presentation] バフンウニ初期発生におけるコヒ―シンサブユニットScc1の機能解析2011

    • Author(s)
      山口真央
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2011-12-15
  • [Presentation] Arsインスレーター種間保存配列(ArsInsC)のインスレーター活性の解析2011

    • Author(s)
      高木春奈
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2011-12-15
  • [Presentation] Exploring molecular mechanisms of early embry osgenesis in the criket, Gryllus bimaculatus2011

    • Author(s)
      Mito Taro
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2011-12-14
  • [Presentation] Making knockoutcrickets with zinc-finger nucleases2011

    • Author(s)
      Watanabe Takahito
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2011-12-13
  • [Presentation] A simplified method forthe rapid construction and evalutation of TALE nuclease2011

    • Author(s)
      Sakuma Tetsushi
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2011-12-13
  • [Presentation] Targeted gene disruption inmedaka using zinc-finger nucleases. knockout of GFP gene2011

    • Author(s)
      Ansai Satoshi
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2011-12-13
  • [Presentation] カタユウレイボヤ胚におけるZFNを用いたeGFP遺伝子への変異導入2011

    • Author(s)
      河合成道
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2011-12-13
  • [Presentation] Zinc-finger nuclease-mediated targeted trangene integration enables quatitative imaging of endogenous ge neexpression in living sea urchin embryo2011

    • Author(s)
      Ochiai Hiroshi
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2011-12-13
  • [Presentation] Functional analysis of Equarin during eye formation2011

    • Author(s)
      Song Xiaohong
    • Organizer
      第44回日本発生生物学会年会
    • Place of Presentation
      沖縄
    • Year and Date
      2011-05-20
  • [Presentation] HpSumf1, the sea urchin Hemicentrotus pulcherrimus homolog of sulfatase modi fying factor 1, is involved inactivation of sulfatases required for control of skeletogenesis2011

    • Author(s)
      Sakuma Tetsushi
    • Organizer
      第44回日本発生生物学会年会
    • Place of Presentation
      沖縄
    • Year and Date
      2011-05-20
  • [Presentation] Targeted mutagenesis of thyroid hormone receptor beta gene by engineered zinc finger nuclease in am phibianembryo2011

    • Author(s)
      Suzuki Ken-ichi
    • Organizer
      第44回日本発生生物学会年会
    • Place of Presentation
      沖縄
    • Year and Date
      2011-05-20
  • [Presentation] Targeted manipulation of genes with zinc finger nucleases in the cricket, Gryllus bimaculatus2011

    • Author(s)
      Watanabe Takahito
    • Organizer
      第44回日本発生生物学会年会
    • Place of Presentation
      沖縄
    • Year and Date
      2011-05-19
  • [Presentation] 人工酵素ZFNタンパク質の発現と機能解析2011

    • Author(s)
      日高大佑
    • Organizer
      日本動物学会中国四国支部・広島県例会
    • Place of Presentation
      東広島
    • Year and Date
      2011-03-05
  • [Presentation] Targeted genemodification via non-homologous end-joining mediatedand homology-directed repairs ofZFN-induced DNA double-stranded breaks2011

    • Author(s)
      Yamamoto Takashi
    • Organizer
      1st international symposium on Genome damageand Non-cancerous diseased
    • Place of Presentation
      Hiroshima
    • Year and Date
      2011-03-03
  • [Presentation] Targeted manipulation of genes with zinc finger nucleases in the cricket, Gryllus bimaculatus2010

    • Author(s)
      Watanabe Takahito
    • Organizer
      第33回日本分子生物学会
    • Place of Presentation
      神戸
    • Year and Date
      2010-12-07
  • [Presentation] Genetic manipulation in seaurchin embryo using zinc-finger nucleases2010

    • Author(s)
      Ochiai Hiroshi
    • Organizer
      第33回日本分子生物学会
    • Place of Presentation
      神戸
    • Year and Date
      2010-12-07
  • [Presentation] バフンウニ初期発生におけるHpNanos mRNAの翻訳調節機構の解析2010

    • Author(s)
      吉田隆也
    • Organizer
      第81回日本動物学会
    • Place of Presentation
      東京
    • Year and Date
      2010-09-23
  • [Presentation] Targeted mutagenesis in thesea urchin embryo using zinc-finger nucleases2010

    • Author(s)
      Ochiai Hiroshi
    • Organizer
      Society for Develop mental Biologist 69th Annual meeting
    • Place of Presentation
      New Mexico, USA
    • Year and Date
      2010-08-08
  • [Presentation] Targeted mutagenesis in the seaurchin embryo using zinc-finger nucleases2010

    • Author(s)
      落合博
    • Organizer
      第43回日本発生生物学会
    • Place of Presentation
      京都
    • Year and Date
      2010-06-20
  • [Presentation] 適応反応のゆらぎと応答,理研シンポジウム「細胞システムの動態と論理II」2010

    • Author(s)
      西川正俊
    • Place of Presentation
      埼玉
    • Year and Date
      2010-04-08
  • [Presentation] Mammalian arylsulfatase A as anovel component of the extracelluar matrix2009

    • Author(s)
      藤田和将
    • Organizer
      第32回日本分子生物学会
    • Place of Presentation
      横浜
    • Year and Date
      2009-12-10
  • [Presentation] Cloning and analysis of Dnmt3 homolog of sea urchin(Hemicentrotus pulcherrimus)2009

    • Author(s)
      山下香
    • Organizer
      第32回日本分子生物学会
    • Place of Presentation
      横浜
    • Year and Date
      2009-12-10
  • [Presentation] Cloning and analysis of Scc1homolog of sea urchin, Hemicentro tuspulcherrimus(HpScc1)2009

    • Author(s)
      山口真央
    • Organizer
      第32回日本分子生物学会
    • Place of Presentation
      横浜
    • Year and Date
      2009-12-10
  • [Presentation] Bacterial chemotaxis is enhancedby nonadaptive fluctuation in sensory system2009

    • Author(s)
      西川正俊
    • Organizer
      第47回日本生物物理学会年会
    • Place of Presentation
      徳島
    • Year and Date
      2009-10-30
  • [Presentation] What determines the accuracy ofbacterial chemotaxis?2009

    • Author(s)
      難波利典
    • Organizer
      第47回日本生物物理学会年会
    • Place of Presentation
      徳島
    • Year and Date
      2009-10-30
  • [Presentation] Nonadaptive fluctuation in adaptive sensory system ofbacterial chemotaxis2009

    • Author(s)
      Nishikawa Masatoshi
    • Organizer
      International Symposiumon Complex Systems Biology
    • Place of Presentation
      Tokyo
    • Year and Date
      2009-09-29
  • [Presentation] バフンウニ胚におけるNanosの機能2009

    • Author(s)
      藤井孝吉
    • Organizer
      第79回日本動物学会
    • Place of Presentation
      静岡
    • Year and Date
      2009-09-19
  • [Presentation] バフンウニSulfは骨片形成におけるVEGFシグナルの調節に関与する2009

    • Author(s)
      藤田和将
    • Organizer
      第79回日本動物学会
    • Place of Presentation
      静岡
    • Year and Date
      2009-09-19
  • [Presentation] Stochastic signal transduction ofbacterial chemotaxis2009

    • Author(s)
      柴田達夫
    • Organizer
      第19回日本数理生物学会年会・企画シンポジウム
    • Place of Presentation
      東京
    • Year and Date
      2009-09-09
  • [Presentation] 多細胞生物の発生過程における遺伝子発現のゆらぎ2009

    • Author(s)
      山本卓
    • Organizer
      数理生命科学の形成と発展
    • Place of Presentation
      東広島
    • Year and Date
      2009-09-03
  • [Presentation] バクテリアの適応反応で生じるノイズと走化性2009

    • Author(s)
      西川正俊
    • Organizer
      数理生命科学の形成と発展
    • Place of Presentation
      東広島
    • Year and Date
      2009-09-03
  • [Presentation] Nonadaptive fluctuation inadaptive sensory system of bacterial chemotaxis2009

    • Author(s)
      西川正俊
    • Organizer
      数理生命科学の形成と発展
    • Place of Presentation
      東広島
    • Year and Date
      2009-09-03
  • [Presentation] バクテリアの適応反応で生じるノイズと走化性2009

    • Author(s)
      西川正俊
    • Organizer
      理研シンポジウム・細胞システムの動態と論理
    • Place of Presentation
      埼玉
    • Year and Date
      2009-04-09
  • [Presentation] Relationship betweenthe noise in adaptation reaction and thechemotactic performance in bacterium2009

    • Author(s)
      Nishikawa Masatoshi
    • Organizer
      GordonResearch Conference on Gradient Sensing & Directed Cell Migration
    • Place of Presentation
      Galveston, Texas, USA
    • Year and Date
      2009-04-02
  • [Book] 生命科学の新しい潮流理論生物学2011

    • Author(s)
      柴田達夫
    • Total Pages
      290
    • Publisher
      共立出版
  • [Book] Cell Singnaling Reactions2010

    • Author(s)
      Shibata Tatsuo
    • Total Pages
      300
    • Publisher
      Noisy signal transduction incellular systems
  • [Book] Shall We遺伝学2009

    • Author(s)
      坂本尚昭
    • Total Pages
      182
    • Publisher
      講談社サイエンティフィック
  • [Remarks]

    • URL

      http://www.mls.sci.hiroshima-u.ac.jp/smg/index.html

  • [Patent(Industrial Property Rights)] 新規DNA結合ドメインおよびそれを含む新規DNA切断酵素2011

    • Inventor(s)
      山本卓・坂本尚昭・佐久間哲史・野地澄晴
    • Industrial Property Rights Holder
      広島大学
    • Industrial Property Number
      特許、特願2011-242250
    • Filing Date
      2011-11-04

URL: 

Published: 2013-07-31  

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